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04c2a1caf46b5b3b96b76c68a96a621072c40f2b
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3048 Commits

Author SHA1 Message Date
Adam J. Stewart
2a04fdca52 Convert LLVM to CMakePackage, update cmake dependency version (#3940) 
* Convert LLVM to CMakePackage, update cmake dependency version

* Remove unused import
 2017-04-21 18:38:07 -05:00
George Hartzell
a90e34f4ca Add info for nextflow@0.17.3 (#3947) 2017-04-21 18:28:13 -05:00
Todd Gamblin
c0356182b6 Remove all test variants (#3923) 2017-04-21 15:18:56 -07:00
Denis Davydov
6017a6a6fe netcdf: fix missing CC = mpicc ; this makes it work with Intel MPI (#3942) 2017-04-21 14:43:27 -07:00
Jeffrey Salmond
a2135dff49 add cppcheck new version (#3935) 2017-04-21 12:54:27 -05:00
Adam J. Stewart
46d0ca9d01 Ensure that tests are optional (#3922) 2017-04-21 12:15:39 -05:00
Adam J. Stewart
5250e8ee89 Fix HPL build, convert to MakefilePackage (#3777) 
* Fix HPL build, convert to MakefilePackage

* Flake8 fix

* Fix: spec -> self.spec

* Properly query for system libraries

* Update Intel-MKL as well

* Recurse in system libs, fix MKL path, fixes lapack_libs
 2017-04-21 12:11:29 -05:00
Javier
41efada340 Adding new python package: py-python-gitlab (#3936) 2017-04-21 11:47:52 -05:00
Jimmy Tang
f86ed1e34d Fix for llvm 4.0.0 on centos (#3904) 
* Fix for llvm 4.0.0 on centos

This addresses https://github.com/LLNL/spack/issues/3791

* Only enable this option if on linux

* Change condition to satisfy standard
 2017-04-21 11:29:41 -05:00
Bruno Turcksin
a017c5e2ef Add boost 1.64.0 (#3934) 2017-04-21 10:06:31 -05:00
Brian Van Essen
011442fd37 Keras 2.0.3 (#3927) 
* Added a package for the MDAnalysis toolkit.

* Added has for Keras version 2.0.3
 2017-04-20 17:48:30 -05:00
Michael Kuhn
f520c0dd8d Add vampirtrace (#3911) 
Since scorep does not support all use cases yet, vampirtrace is still
useful in some circumstances.
 2017-04-20 15:01:06 -05:00
Adam J. Stewart
e2e6dea9b3 Gettext test suite fails when run in parallel (#3921) 2017-04-20 13:06:11 -05:00
Adam J. Stewart
f0a6ead19c Flake8 2017-04-20 12:48:02 -05:00
Adam J. Stewart
9ca0d1f5f0 Remove all test variants 2017-04-20 12:13:11 -05:00
Adam J. Stewart
9bd6d21322 Add variant to mvapich2 to set size of rank bits (#3886) 2017-04-19 21:31:21 -07:00
Adam J. Stewart
3c0c0f3457 binutils should link to Spack zlib installation (#3914) 2017-04-19 21:29:27 -07:00
Adam J. Stewart
f51af42bc6 Add latest version of HOOMD-blue (#3889) 2017-04-19 21:24:32 -07:00
Adam J. Stewart
f4858cb7a7 Rework Spack's Mercurial support (#3834) 
* Add tests to mercurial package

* Add support for --insecure with mercurial fetching

* Install man pages and tab-completion scripts

* Add tests and latest version for all deps

* Flake8 fix

* Use certifi module to find CA certificate

* Flake8 fix

* Unset PYTHONPATH when running hg

* svn_fetch should use to svn-test, not hg-test

* Drop Python 3 support in Mercurial

Python 3 support is a work in progress and isn't currently
recommended:

https://www.mercurial-scm.org/wiki/SupportedPythonVersions

* Test both secure and insecure hg fetching

* Test both secure and insecure git and svn fetching
 2017-04-19 18:59:04 -07:00
Jimmy Tang
53763f7698 Sox (#3908) 
* Initial add of flac

* Initial add of id3lib

* Initial add of the opus codec

* Initial add of sox audio processing tools

* Cleanup spec files to be inline with current standard

* Fix pep8 compliance

* Remove un-needed configuration
 2017-04-19 16:21:13 -05:00
George Hartzell
a3dff31b07 Add info for sqlite@3.18.0 (#3913) 2017-04-19 16:15:21 -05:00
Mark Olesen
22a966d010 add lines missed in rebase (adios +bzip2) (#3907) 2017-04-19 09:36:46 -05:00
Milton Woods
9b6b91b0b9 ncl: capture more dependencies (#3902) 
* ncl: add depends_on statements for bison, flex and libiconv

* ncl: depends on flex for building and linking

* ncl: links with -ll, so requires flex with variant '+lex'

* ncl: depends on szip; external hdf5 may not provide it
 2017-04-19 06:55:22 -05:00
Milton Woods
b00a12565c pango: depends on libxft when +X, disable libxft support when ~X (#3899) 2017-04-19 06:54:06 -05:00
George Hartzell
13fef18244 Ensure sbin is prepended to PATH in modulefiles (#3843) 2017-04-19 06:51:04 -05:00
Denis Davydov
eaefaaba5b espresso: add 6.1.0 (#3881) 
* espresso: fix missing dependency on elpa, add 6.1.0

* override default libs of elpa to get shared always
 2017-04-19 12:34:42 +02:00
Milton Woods
13911f1b46 gdbm: GNU dbm package for manipulating hashed databases (#3895) 2017-04-19 09:32:00 +02:00
George Hartzell
a0b19d50c5 Disable parallel builds for vim (#3893) 
* Disable parallel builds

The install step creates a bunch of links to the vim binary, e.g.
`view`.  When run with -j greater than 1 there are silent failures.

Running w/out parallelism seems to fix it.

* Only constrain the install phase to be -j 1

Thanks @adamjstewart!
 2017-04-18 20:46:09 -05:00
Javier
687f5e78ae Adding new python package: py-simplejson (#3883) 
* Adding new python package: py-simplejson

* Adding setuptools dependency

* Fixing typo
 2017-04-18 12:02:55 -05:00
Christoph Junghans
2a3fc6c404 charm: set sane default (#3865) 
see https://github.com/LLNL/spack/pull/3852#pullrequestreview-32996651
for details
 2017-04-18 12:02:41 -05:00
Denis Davydov
ce714b5641 ocotpus and arpack-ng: fix arpack bug and add libs to arpack-ng (#3875) 
* ocotpus and arpack-ng: fix arpack bug and add libs to arpack-ng

also rename the variant to be consistent with other packages

* fix a bug

* flake8
 2017-04-18 11:50:10 -05:00
George Hartzell
afbe81b455 Add version info for git-lfs v2.0.2 (#3885) 2017-04-18 11:48:53 -05:00
Kelly (KT) Thompson
fad4ce21cc Provide version 3.8.0 of CMake. (#3882) 2017-04-18 10:59:59 -05:00
Javier
7ed99a4c86 Adding new package: sas (#3877) 2017-04-18 07:07:07 -05:00
Denis Davydov
5558bec14e ape: constrain libxc version (#3876) 2017-04-18 07:03:48 -05:00
Mark Olesen
c65d0775cf ADIOS - add bzip2 transport, python patch not applicable to adios 1.9.0 (#3874) 2017-04-18 07:00:39 -05:00
sknigh
d17b5eb2b9 Added expat dependency to apr-util (#3871) 2017-04-18 06:57:49 -05:00
健美猫
4e95525280 Add patched openfst-1.4.1 and kaldi@c024e8 required by CNTK. (#3806) 2017-04-18 06:56:18 -05:00
Denis Davydov
fc938962fa octave: add 4.2.1 (#3872) 
Also switch to arpack-ng, which is maintained and has bugfixes,
whereas the original arpack code is abandoned.
 2017-04-18 06:55:11 -05:00
Denis Davydov
89f531c18a gmsh: add 3.0.1 (#3873) 2017-04-18 11:30:17 +02:00
Adam J. Stewart
6d7b386199 Add a py-fiscalyear package (#3864) 
* Add a py-fiscalyear package

* Declare supported Python versions
 2017-04-17 16:46:52 -05:00
Adam J. Stewart
ebf30d95cd Add latest numpy release (#3869) 2017-04-17 15:45:52 -05:00
Denis Davydov
0ed18de836 opneblas: fix compilation with clang (#3862) 
* opneblas: fix compilation with clang

* indentation
 2017-04-17 09:16:18 -05:00
Michael Kuhn
3331c042af Fix udunits2 (#3809) 2017-04-17 09:15:02 -05:00
Adam J. Stewart
cc747d6b6f Remove redundant cmake dependencies (#3860) 2017-04-16 12:23:26 -05:00
Christoph Junghans
675a67e2ca random123: put uniform.hpp in right subfolder (#3858) 2017-04-16 08:47:46 -05:00
Christoph Junghans
a3378ccd3d charm: add support for shared linking (#3859) 2017-04-16 08:47:00 -05:00
Christoph Junghans
fdc8f71a5c trilinos: allow to compile exodus (#3857) 2017-04-15 21:57:44 -05:00
Christoph Junghans
1d514f48bc random123: install uniform.hpp as well (#3856) 2017-04-15 21:57:19 -05:00
Erik Schnetter
62fb1ad990 hpx5: Add patch to select Spack compiler on Cray (#3798) 2017-04-14 22:38:22 -05:00