Commit Graph

598 Commits

Author SHA1 Message Date
Michael Kuhn
84ae7872d3 Update copyright notices for 2017 (#5295) 2017-09-06 17:44:16 -10:00
Mark C. Miller
a0f39397c1 Add contributors link to Sphinx docs (#5213) 2017-08-25 02:57:44 -07:00
Matthew Scott Krafczyk
48bf1e276b Add environment variables to path substitution
Update documentation on config file variable substitutions and
add expansion of environment variables in config files.
2017-08-21 18:35:00 -07:00
Axel Huebl
6472c39c2e Docs: Travis-CI Workflow (#5133)
* Docs: Travis-CI Workflow

Add a workflow how to use spack on Travis-CI.

Future Work:

depending if and how we can simplify 5101:
add a multi-compiler, multi-C++-standard, multi-software
build matrix example

* Fix Typos
2017-08-17 11:25:40 -05:00
Adam J. Stewart
af02774b3e Add tab completion & update docs for buildcache
This adds tab completion and fixes some formatting issues in the
documentation for the "spack buildcache" command.
2017-08-16 13:58:09 -07:00
Adam J. Stewart
db657d938d Refactor IntelInstaller into IntelPackage base class (#4300)
* Refactor IntelInstaller into IntelPackage base class

* Move license attributes from __init__ to class-level

* Flake8 fixes: remove unused imports

* Fix logic that writes the silent.cfg file

* More specific version numbers for Intel MPI

* Rework logic that selects components to install

* Final changes necessary to get intel package working

* Various updates to intel-parallel-studio

* Add latest version of every Intel package

* Add environment variables for Intel packages

* Update env vars for intel package

* Finalize components for intel-parallel-studio package

Adds a +tbb variant to intel-parallel-studio.
The tbb package was renamed to intel-tbb.
Now both intel-tbb and intel-parallel-studio+tbb
provide tbb.

* Overhaul environment variables set by intel-parallel-studio

* Point dependent packages to the correct MPI wrappers

* Never default to intel-parallel-studio

* Gather env vars by sourcing setup scripts

* Use mpiicc instead of mpicc when using Intel compiler

* Undo change to ARCH

* Add changes from intel-mpi to intel-parallel-studio

* Add comment explaining mpicc vs mpiicc

* Prepend env vars containing 'PATH' or separators

* Flake8 fix

* Fix bugs in from_sourcing_file

* Indentation fix

* Prepend, not set if contains separator

* Fix license symlinking broken by changes to intel-parallel-studio

* Use comments instead of docstrings to document attributes

* Flake8 fixes

* Use a set instead of a list to prevent duplicate components

* Fix MKL and MPI library linking directories

* Remove +all variant from intel-parallel-studio

* It is not possible to build with MKL, GCC, and OpenMP at this time

* Found a workaround for locating GCC libraries

* Typos and variable names

* Fix initialization of empty LibraryList
2017-08-16 12:21:07 -05:00
Patrick Gartung
ab56c742ca Create, install and relocate tarballs of installed packages
Adds the "buildcache" command to spack. The buildcache command is
used to create gpg signatures for archives of installed spack
packages; the signatures and archives are placed together in a
directory that can be added to a spack mirror. A user can retrieve
the archives from a mirror and verify their integrity using the
buildcache command. It is often the case that the user's Spack
instance is located in a different path compared to the Spack
instance used to generate the package archive and signature, so
this includes logic to relocate the RPATHs generated by Spack.
2017-08-14 14:32:27 -07:00
Massimiliano Culpo
faeb1b77b2 Merged 'purge' command with 'clean' and deleted 'purge' (#4970)
* Merged 'purge' command with 'clean'. Deleted 'purge'. fixes #2942

'spack purge' has been merged with 'spack clean'. Documentation has been
updated accordingly. The 'clean' and 'purge' behavior are not mutually
exclusive, and they log brief information to tty while they go.

* Fixed a wrong reference to spack clean in the docs

* Added tests for 'spack clean'. Updated bash completion.
2017-08-09 10:02:38 -07:00
Adam J. Stewart
7eb263effe Add a SConsPackage base class (#4936)
* Add a SConsPackage base class

* Make Matlab extendable

* Most dependencies are actually required

* Cantera requires older version of fmt
2017-08-04 16:52:10 -05:00
Adam J. Stewart
452f382293 Add a QMakePackage base class (#4925)
* Add a QMakePackage base class

* Fix sqlite linking bug in qt-creator

* Add latest version of qt-creator

* Add latest version of qwt

* Use raw strings for regular expressions

* Increase minimum required version of qt

* Add comment about specific version of sqlite required

* Fixes for latest version of qwt and qt-creator

* Older versions of Qwt only work with older versions of Qt
2017-08-04 08:46:07 -07:00
Adam J. Stewart
82735deafd Clarify docs on using a hash in a spec (#4908) 2017-07-31 13:13:39 -07:00
Adam J. Stewart
250ee413e9 Change Version formatting properties and functions to return Version objects (#4834)
* Change version.up_to() to return Version() object
* Add unit tests for Version.up_to()
* Fix packages that expected up_to() to return a string
* Ensure that up_to() preserves separator characters
* Use version indexing instead of up_to
* Make all Version formatting properties return Version objects
* Update docs
* Tests need to test string representation
2017-07-24 13:02:13 -07:00
becker33
f962aba6ce Allow packages to control handling of compiler flags (#4421)
* Initial work on flag trapping using functions called <flag>_handler and default_flag_handler

* Update packages so they do not obliterate flags

* Added append to EnvironmentModifications class

* changed EnvironmentModifications to have append_flags method

* changed flag_val to be a tuple

* Increased test coverage

* added documentation of flag handling
2017-07-19 20:12:00 -07:00
George Hartzell
ff906faf9a Typo: submdoules -> submodules (#4716) 2017-07-12 07:48:31 +02:00
Adam J. Stewart
9933d759ac Update hdfgroup packages to new URL structure (#4643)
* Update hdfgroup packages to new URL structure

* Update docs now that HDF5 URL isn't that complicated
2017-06-29 21:38:47 -05:00
EmreAtes
898c7f8838 add mpi to providers to remove virtual package error (#4608) 2017-06-28 12:24:29 -05:00
Adam J. Stewart
e5ce7b1639 Allow arbitrary Prefix attributes (#4591)
* Allow arbitrary Prefix attributes
* Test attribute type as well

* Flake8 fixes

* Remove __new__ method

* Fewer uses of join_path in the docs
2017-06-24 22:39:31 -07:00
Todd Gamblin
cac4362f64 Make LICENSE recognizable by GitHub. (#4598) 2017-06-24 22:22:55 -07:00
becker33
541496dfe1 System config (#4518)
* Code changes to enable system config scope in /etc

Files will go in either /etc/spack or /etc/spack/<platform>
Required minor changes to conftest.

* Updated documentation to match new config scope
2017-06-16 12:31:56 -07:00
Adam J. Stewart
218992862c Move gpg section of docs to Getting Started (#4446) 2017-06-09 12:27:29 -05:00
Stas Sergienko
8018f6cdf6 Fixed duplicated spec: nag@6.1 line in getting started guide (#4445) 2017-06-07 11:50:56 -05:00
Adam J. Stewart
f9ac965fb9 Document known issue with R concretization (#4313) 2017-05-27 12:51:03 -05:00
Ben Boeckel
f38d250e50 gpg: add 'spack gpg subcommand (#3845)
- Add a `spack gpg` subcommand in anticipation of signed binaries.
- GPG keys are stored in var/spack/gpg, and the spack gpg command manages them.
- Docs are included on the command.
2017-05-26 10:31:04 -07:00
Todd Gamblin
32c570913d Move doc dependencies to requirements.txt for readthedocs (#4280)
* Move doc dependencies to requirements.txt for readthedocs

* Move sphinx to doc requirements.
2017-05-17 20:45:03 -05:00
Adam J. Stewart
cafc3cc3ca Sphinx no longer supports Python 2.6 (#4266)
* Sphinx no longer supports Python 2.6

* Update vendored sphinxcontrib.programoutput from 0.9.0 to 0.10.0

* Documentation cannot be built in parallel

* Let Travis install programoutput for us

* Remove vendored sphinxcontrib-programoutput

Recent updates to the sphinx package prevent the vendored version
from being found in sys.path. We don't vendor sphinx, so it doesn't
make sense to vendor sphinxcontrib-programoutput either.
2017-05-17 11:36:02 -05:00
Adam J. Stewart
b630c06773 Sphinx no longer ignores first argument (#4243)
* Sphinx no longer ignores first argument
* Duplicate first argument for maximum compatibility
2017-05-16 14:24:35 -07:00
Adam J. Stewart
73896e9481 Remind developers to update tab completion script (#4148) 2017-05-05 18:52:28 -05:00
Adam J. Stewart
9b49dfdc2a Fix typos in Basic Installation Tutorial (#4127) 2017-05-05 13:05:56 -05:00
Adam J. Stewart
1336630f17 Add link to spack view docs in command index (#4082) 2017-05-02 11:20:45 -05:00
Adam J. Stewart
2511520b32 Add a WafPackage base class (#3975)
* Add a WafPackage base class

* Correct comment in docstring

* Be more specific about the Python versions supported
2017-05-01 08:00:09 -07:00
Adam J. Stewart
eaa50d3b7c Add API Docs for lib/spack/llnl (#3982)
* Add API Docs for lib/spack/llnl
* Clean up after previous builds
* Better fix for purging API docs
2017-04-25 22:24:02 -07:00
Todd Gamblin
99a8297add Rename tutorial_sc16.rst to tutorial.rst (#3974)
- make the name more generic for posterity.
2017-04-24 15:25:41 -07:00
Christoph Junghans
0b002c2911 fetch git submodules recursively (#3779)
* fetch git submodules recursively

This is useful if the submodules have submodules themselves. On
the other hand doing a recursive update doesn't hurt if there
is only one level.

* fetch submodules with depth=1 as well (fix #2190)

* use git submodule with depth only for git>=1.8.4
2017-04-21 21:59:30 -07:00
Adam J. Stewart
21e4a81de0 Add Napoleon extension to support Google docstrings (#3920) 2017-04-20 08:32:21 -07:00
Adam J. Stewart
bd1beedaf5 Allow users to set parallel jobs in config.yaml (#3812)
* Allow users to set parallel jobs in config.yaml

* Undo change from endash to emdash

* Remove parallel config, rename jobs to build_jobs
2017-04-15 08:31:00 -07:00
Adam J. Stewart
e12e9996e4 Document commands that no longer work (#3781) 2017-04-12 10:46:00 -05:00
Denis Davydov
c9da92dc97 doc: start with known issues section (#3722) 2017-04-10 08:20:57 -05:00
Adam J. Stewart
8e4ada5e99 Make it more clear that version ranges are inclusive (#3759) 2017-04-10 07:25:48 -05:00
Max Katz
a526bcaf11 Correct uninstall -d to uninstall -R in tutorial (#3740)
-d was changed to -R as of PR #1917
2017-04-06 15:44:43 -05:00
Todd Gamblin
715ac8b7e6 Update copyright on the docs. (#3718) 2017-04-05 18:34:17 -07:00
scheibelp
9e50d16f13 Merge pull request #2789 from paulhopkins/features/allow_package_installation_directory_to_be_configured
Allow installation directory layout to be configured
2017-04-05 10:45:11 -07:00
Paul Hopkins
95c3cff6be Allow installation directory layout to be configured using either hash
length parameter or spec formatting.
2017-04-05 12:08:56 +01:00
Justin Cook
508c96d046 Update getting_started.rst (#3685)
Fixed typo referring to .bashrc file
2017-04-04 06:50:44 -05:00
Adam J. Stewart
50df071ad9 Overhaul Spack's URL parsing (#2972)
* Remove fake URLs from Spack

* Ignore long lines for URLs that start with ftp:

* Preliminary changes to version regexes

* New redesign of version regexes

* Allow letters in version-only

* Fix detection of versions that end in Final

* Rearrange a few regexes and add examples

* Add tests for common download repositories

* Add test cases for common tarball naming schemes

* Finalize version regexes

* spack url test -> spack url summary

* Clean up comments

* Rearrange suffix checks

* Use query strings for name detection

* Remove no longer necessary url_for_version functions

* Strip off extraneous information after package name

* Add one more test

* Dot in square brackets does not need to be escaped

* Move renaming outside of parse_name_offset

* Fix versions for a couple more packages

* Fix flake8 and doc tests

* Correctly parse Python, Lua, and Bio++ package names

* Use effective URLs for mfem

* Add checksummed version to mitos

* Remove url_for_version from STAR-CCM+ package

* Revert changes to version numbers with underscores and dashes

* Fix name detection for tbb

* Correctly parse Ruby gems

* Reverted mfem back to shortened URLs.

* Updated instructions for better security

* Remove preferred=True from newest version

* Add tests for new `spack url list` flags

* Add tests for strip_name_suffixes

* Add unit tests for version separators

* Fix bugs related to parseable name but in parseable version

* Remove dead code, update docstring

* Ignore 'binary' at end of version string

* Remove platform from version

* Flip libedit version numbers

* Re-support weird NCO alpha/beta versions

* Rebase and remove one new fake URL

* Add / to beginning of regex to avoid picking up similarly named packages

* Ignore weird tar versions

* Fix bug in url parse --spider when no versions found

* Less strict version matching for spack versions

* Don't rename Python packages

* Be a little more selective, version must begin with a digit

* Re-add fake URLs

* Fix up several other packages

* Ignore more file endings

* Add parsing support for Miniconda

* Update tab completion

* XFAILS are now PASSES for 2 web tests
2017-04-03 15:34:16 -07:00
Massimiliano Culpo
ffef681377 new directive: conflicts() (#3125)
* Add conflicts(<spec>) directive
* openblas: added conflicts for intel@16 refs #3119
* added brief docs and unit tests
2017-04-02 11:40:09 -07:00
Todd Gamblin
0e785e0500 Add epigraph in docs. 2017-04-01 15:32:06 -07:00
Todd Gamblin
a8bcc23fe7 Spack works with Python 3
- Update version guard in spack script to allow python 3
- Update min required version in the docs
2017-03-31 13:40:41 -07:00
Todd Gamblin
0331b08c64 Update externals to work with Python 3
- Update YAML version to support Python 3
- Python 3 support for ordereddict backport
- Exclude Python3 YAML from version tests.
- Vendor six into Spack.
- Make Python version-check tests work with Python 3
- Add ability to add version check exceptions with '# nopyqver' line
  comments.
2017-03-31 13:40:41 -07:00
Milton Woods
9e43ff821c Extendable Perl (#3614)
* perl: make extendable and add Module::Build package
* perl: allow 'spack create' to identify perl packages from their contents
* perl-module-build: fix indenting of package docstring
* perl: split install() method for extensions into phases
* perl: auto-detect build method (Makefile.PL vs Build.PL) and define a 'check' method
* PerlPackage: use import statements similar to those in AutotoolsPackage
* PerlModule: fix detection of Build.PL
* PerlPackageTemplate: remove extraneous lines to avoid flake8 warnings
* PerlPackageTemplate: split into separate templates for Makefile.PL and Build.PL
* PerlPackage: add cross-references to docstrings
* AutotoolsPackage: fix ambiguous cross-references to avoid errors in doc tests
* PerlbuildPackageTemplate: depend on perl-module-build if Build.PL exists
2017-03-30 16:38:58 -07:00
Adam J. Stewart
10b767b93f Don't use @system in packages.yaml (#3472) 2017-03-17 07:55:55 -07:00