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Author SHA1 Message Date
Oliver Perks
cddef35ef8 cmake: changed the regex to search for externals (#31688) 2023-02-21 17:29:14 +01:00
Rocco Meli
1636c89aba Add pyedr and panedr (#35576) 
* add pyedr

* black

* add panedr

* Update var/spack/repos/builtin/packages/py-pyedr/package.py

* Update var/spack/repos/builtin/packages/py-panedr/package.py

* Update var/spack/repos/builtin/packages/py-pyedr/package.py

* Update var/spack/repos/builtin/packages/py-pyedr/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pyedr/package.py

* Update var/spack/repos/builtin/packages/py-panedr/package.py

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-02-21 09:55:19 -06:00
Alec Scott
9110f5dfb6 ant: add v1.10.13 and deprecate previous versions due to CVE (#35572) 2023-02-21 15:18:07 +01:00
Harmen Stoppels
bc24a8f290 Spec.satisfies should be commutative when strict=False (#35598) 
The call:
```
x.satisfies(y[, strict=False])
```
is commutative, and tests non-empty intersection, whereas:
```
x.satsifies(y, strict=True)
```
is not commutative, and tests set-inclusion.

There are 2 fast paths. When strict=False both self and other need to 
be concrete, when strict=True we can optimize when other is concrete.
 2023-02-21 14:30:47 +01:00
simon-Leary42
33bf1fd033 nonexistent module concise error message (#35502) 2023-02-21 04:50:56 -08:00
Harmen Stoppels
5b8917188a Disable module generation by default (#35564) 
a) It's used by site administrators, so it's niche
b) If it's used by site administrators, they likely need to modify the config anyhow, so the default config only serves as an example to get started
c) it's too arbitrary to enable tcl, but disable lmod
 2023-02-21 10:00:37 +01:00
luker
fbd5c5c2cd superlu-dist: extend when to apply a patch (#32985) 2023-02-21 07:41:59 +01:00
Massimiliano Culpo
55e3026152 ccls: add v0.20220729 (#35593) 2023-02-21 07:13:58 +01:00
Massimiliano Culpo
874f76e45e mvapich2: update checksum (#35587) 
See #29340

Co-authored-by: Nat Shineman <shineman.5@buckeyemail.osu.edu>
 2023-02-21 06:55:11 +01:00
Thomas Madlener
ebc24b7063 dd4hep: extend conflict on CMake (#27125) 2023-02-20 21:33:11 -08:00
Adam J. Stewart
ce9f8143cc Fix view support for optional Python extensions (#35489) 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2023-02-20 11:58:28 -08:00
Harmen Stoppels
c1ff7bbf04 environment views: better, earlier error on clash (#35541) 
Spack generally ignores file-file projection clashes in environment
views, but would eventually error when linking the `.spack` directory
for two specs of the same package.

This leads to obscure errors where users have no clue what the issue is
and how to fix it. On top of that, the error comes very late, since it
happens when the .spack dir contents are linked (which happens after
everything else)

This PR improves that by doing a quick check ahead of time if clashes
are going to be anticipated (by simply checking for clashes in the
projection of each spec's .spack metadir). If there are clashes, a
human-readable error is thrown which shows two of the conflicting specs,
and tells users to user unify:true, view:false, or set up custom
projections.
 2023-02-20 19:14:27 +01:00
Rocco Meli
aa708c8981 Add pytng (#35575) 
* add pytng

* black

* add setuptools

* fix

* Update var/spack/repos/builtin/packages/py-pytng/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pytng/package.py

* Update var/spack/repos/builtin/packages/py-pytng/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-02-20 11:15:19 -06:00
simonleary-umass-edu
712d358f7e apptainer use the --with-suid configure option (#35513) 2023-02-20 17:39:28 +01:00
Ben Wibking
e8238fe330 Patchel shutil.copystat to avoid PermissionError on Lustre (#27247) 2023-02-20 17:28:03 +01:00
Alec Scott
e8a19aa089 Add Alluxio v2.9.1 and deprecate previous versions due to CVE (#35574) 2023-02-20 07:54:45 -08:00
Alec Scott
4a844a971a httpd: add v2.4.55 and deprecate previous versions due to CVE-2022-31813 (#35571) 2023-02-20 07:35:16 -08:00
Harmen Stoppels
5e337d907b spack ci: remove 120s db timeout since 60s is the default now (#35566) 2023-02-20 14:41:26 +01:00
Harmen Stoppels
208c9585b8 Revert "lib/spack/spack/store.py: Fix #28170 for padding relocation (#33122)" (#35077) 
This reverts commit c721aab006.
 2023-02-20 13:56:11 +01:00
Alec Scott
1ae4ca611e Add restic v0.15.1 (#35563) 2023-02-20 12:53:10 +01:00
Alec Scott
54eddb2301 Add py-python-lsp-server v1.7.1 (#35561) 2023-02-20 12:52:55 +01:00
Alec Scott
01dafb8047 Add activemq v5.17.3 and deprecate previous version due to CVE (#35573) 2023-02-20 12:49:54 +01:00
Greg Becker
6ef2c33b0e scale mpi dependency is incorrect (#35385) 2023-02-20 02:49:38 -08:00
Paul Kuberry
beddf4dcc4 xyce: add patch for pymi parameter merge and add maintainer (#35421) 
* xyce: add maintainer

* xyce: add patch for pymi parameter merge
 2023-02-20 11:37:17 +01:00
Alec Scott
e143065448 Add go v1.20.1, 1.19.6 and un-deprecate previous versions without CVEs (#35560) 2023-02-20 11:33:07 +01:00
Patrick Bridges
9d9ea07424 Fix kokkos package.py to filter spack wrappers in launch compiler and cmake configs (#35494) 
Kokkos when compiled by spack without +wrapper could potentially capture the spack compiler wrappers, resulting in cmake configs and kokkos_launch_compiler trying to run the spack compiler wrapper after installation.
 2023-02-20 01:23:37 -08:00
elenimath
c769582709 Pass tests argument to solver method when concretizing together (#35290) 
to make the workaround for #29447 work with `concretizer:unify:true` option
 2023-02-20 10:21:24 +01:00
Sebastian Ehlert
1958c2f986 Update xtb 6.6.0 (#35436) 2023-02-20 10:17:32 +01:00
Rocco Meli
3016da79fe Add GNINA and related packages (#35439) 2023-02-20 10:14:00 +01:00
Adam J. Stewart
0500a3cec0 py-torchbenchmark: add new package (#35443) 2023-02-20 10:12:20 +01:00
Emil Briggs
313797e3d4 Update for v5.0.4 release. (#35511) 2023-02-20 09:52:38 +01:00
Wouter Deconinck
ae189cfab8 geant4: new version 11.1.1 (#35528) 
Bugfix release only. No changes in build system.
 2023-02-20 09:47:13 +01:00
Wouter Deconinck
7c09ab174b acts: new versions 23.1.0, 23.2.0, 23.2.1 (#35540) 
* acts: new versions 23.1.0, 23.2.0, 23.2.1

- https://github.com/acts-project/acts/compare/v23.0.0...v23.1.0: no changes needed to package.py
- https://github.com/acts-project/acts/compare/v23.1.0...v23.2.0: no changes needed to package.py
- https://github.com/acts-project/acts/compare/v23.2.0...v23.2.1: no changes needed to package.py

* actsvg: new versions 0.4.27, 0.4.28 (and updated list_url)

* acts: depends_on actsvg@0.4.28: when acts@23.2: +svg

* autodiff: new version 0.6.5-0.6.12 (and list_url fix)

* vecmem: new versions 0.13.0-0.22.0 (and list_url fix)
 2023-02-20 09:42:58 +01:00
Wouter Deconinck
c14b6b80cc clhep: new versions 2.4.6.2, 2.4.6.3, 2.4.6.4 (#35542) 
Mostly minor changes in random and support for c++20. No build system changes needed.

Ref: https://gitlab.cern.ch/CLHEP/CLHEP/-/compare/CLHEP_2_4_6_2...CLHEP_2_4_6_4
 2023-02-20 09:41:43 +01:00
Wouter Deconinck
899d2708a3 lhapdf: new versions 6.5.2, 6.5.3 (#35543) 
https://gitlab.com/hepcedar/lhapdf/-/compare/lhapdf-6.5.3...lhapdf-6.5.1: bugfixes only
 2023-02-20 09:41:26 +01:00
Wouter Deconinck
5ccc2e1a8e whizard: new version 3.1.0 (#35550) 
https://gitlab.tp.nt.uni-siegen.de/whizard/public/-/compare/v3.0.3...v3.1.0, no changes to package.py needed.
 2023-02-20 09:40:23 +01:00
Adam J. Stewart
7c01d3ba35 Fix broken links in docs (#35582) 2023-02-20 09:21:18 +01:00
Thomas Bouvier
81f11d5562 py-pyarrow: fix build environment (#35567) 
* `py-pyarrow`: fix build environment

* Use `satisfies()` for specs
 2023-02-19 12:48:14 -08:00
Adam J. Stewart
747f032ec2 pandoc: disable texlive variant by default (#35569) 2023-02-19 13:22:51 +01:00
Alec Scott
97ea182ee0 hugo: add v0.110.0, v0.108.0, v0.107.0 (#35562) 2023-02-19 00:19:11 +01:00
Harmen Stoppels
011c28a538 openblas: fix prereqs / make race (#35395) 
Fix a race in the makefile where the shared lib was built before the
object files were available.

See https://github.com/xianyi/OpenBLAS/issues/3899
 2023-02-18 12:27:34 -08:00
Harmen Stoppels
86320eb569 Improve error handling in buildcache downloads (#35568) 
The checksum exception was not detailed enough and not reraised when using cache only, resulting in useless error messages.

Now it dumps the file path, expected
hash, computed hash, and the downloaded file summary.
 2023-02-18 19:22:48 +01:00
Adam J. Stewart
c42a4ec1ec Ignore black reformat in git blame (#35544) 2023-02-18 01:03:50 -08:00
Harmen Stoppels
fb644de086 clang/apple-clang correct c/c++ standard flags (#35062) 2023-02-17 23:18:01 +01:00
Sinan
352d56d6b0 package_qgis_add_v328 (#35500) 
* package_qgis_add_v328

* restore long term release

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2023-02-17 14:58:47 -06:00
G-Ragghianti
b711d5a6a4 Moving official repo and download locations for slate, blaspp, and lapackpp (#35521) 2023-02-17 09:58:48 -08:00
Adam J. Stewart
983c68cc30 py-pyinstrument: add v4.4.0 (#35525) 2023-02-17 04:35:34 -08:00
Wouter Deconinck
7d8d538a71 gaudi: add v36.10 (#35527) 
Bugfixes only, https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v36r9...v36r10
 2023-02-17 04:27:24 -08:00
Jim Edwards
fa3ced5242 add PIC flag in mpi-serial build (#35524) 2023-02-17 04:27:11 -08:00
Annop Wongwathanarat
73fcda19d2 armcomputelibrary: new package (#35515) 2023-02-17 04:14:23 -08:00