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Author SHA1 Message Date
Sam Grayson
49cda811fc Add new version of snakemake (#34041) 
* Add new version of snakemake

* Add myself as a maintainer

* py-retry -> py-reretry

* Added snakemake variants for storage systems

* Updated comments

* Responded to Adam's comments

* Fixed spack style

* Add build/run dependency types
 2022-11-28 15:10:10 -07:00
Benjamin Meyers
a97312535a New package: py-statmorph (#34158) 
* New package py-statmorph w/ dependecies. Add py-astropy@5.1

* [@spackbot] updating style on behalf of meyersbs

* [py-statmorph,py-astropy,py-pyerfa] minor fixes
 2022-11-28 15:46:10 -06:00
Benjamin Meyers
a0180ef741 New package: py-stui (#34156) 
* New package py-stui

* [py-stui] add maintainer

* [@spackbot] updating style on behalf of meyersbs

* [py-stui] fix deps
 2022-11-28 15:45:40 -06:00
iarspider
d640a573a8 Add checksum for py-rsa 4.9 (#34115) 
* Add checksum for py-rsa 4.9

* Update package.py

* Update var/spack/repos/builtin/packages/py-rsa/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-11-28 14:10:21 -07:00
Cameron Smith
b3679406d0 omegah: new scorec version, fix cuda flags (#34169) 2022-11-28 13:03:27 -08:00
eugeneswalker
587488882a e4s ci: add hdf5-vol-async; remove expired comments (#34110) 2022-11-28 19:35:42 +00:00
Satish Balay
a17844a367 petsc, py-petsc4py: add 3.18.2 (#34161) 2022-11-28 10:51:48 -08:00
Manuela Kuhn
093a37750c py-bidskit: new package and dcm2niix: add 1.0.20220720 (#34162) 
* py-bidskit: new package and dcm2niix: add 1.0.20220720

* Remove list_url
 2022-11-28 11:05:49 -07:00
iarspider
173cc7e973 Add checksum for py-traitlets 5.3.0 (#34127) 2022-11-28 11:05:35 -07:00
Greg Becker
451e3ff50b warn about removal of deprecated format strings (#34101) 
* warn about removal of deprecated format strings

Co-authored-by: becker33 <becker33@users.noreply.github.com>
 2022-11-28 10:03:49 -08:00
Manuela Kuhn
523c4c2b63 py-dcm2bids: add new package (#34163) 2022-11-28 10:46:04 -07:00
Thomas-Ulrich
35e5a916bc easi: update package, rework impalajit (#34032) 2022-11-28 15:54:21 +01:00
Annop Wongwathanarat
1374577659 acfl: provides blas, lapack, and fftw-api@3 (#34154) 2022-11-28 14:25:32 +01:00
Hector Martinez-Seara
4c017403db texinfo: add v7.0 (#34150) 2022-11-28 06:22:13 -07:00
Massimiliano Culpo
fdfda72371 Use a module-like object to propagate changes in the MRO, when setting build env (#34059) 
This fixes an issue introduced in #32340, which changed the semantics of the "module"
object passed to the "setup_dependent_package" callback.
 2022-11-28 14:18:26 +01:00
Harmen Stoppels
efa1dba9e4 Revert "Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)" (#34087)" (#34153) 
This reverts commit 63e4406514.
 2022-11-28 06:06:03 -07:00
Annop Wongwathanarat
2a7ae2a700 armpl-gcc: add post-installation check by running examples (#34086) 2022-11-28 13:55:51 +01:00
Adam J. Stewart
a1b4e1bccd Add type hints to Prefix class (#34135) 2022-11-28 13:49:57 +01:00
Alec Scott
066ec31604 Add restic v0.14.0 (#34148) 2022-11-28 08:39:37 +01:00
Alec Scott
bb1888dbd4 direnv: add v2.32.2 (#34147) 2022-11-27 22:09:53 +01:00
Michael Kuhn
bc17b6cefb rust: add 1.65.0 (#34124) 2022-11-27 16:03:46 +01:00
Umashankar Sivakumar
46a0cd8e55 SingularityCE: Add conmon+squashfs as dependencies (#33891) 2022-11-27 13:05:49 +01:00
fpruvost
b2ceb23165 pastix: add new version 6.2.2 (#34066) 2022-11-27 00:33:05 +01:00
Harmen Stoppels
2fad966139 neovim: fix deptypes (#34060) 2022-11-27 00:23:24 +01:00
Luke Diorio-Toth
0b01c8c950 py-fastpath: new package (#34142) 
* py-fastpath: new package

* Update var/spack/repos/builtin/packages/py-fastpath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-11-26 15:57:45 -07:00
Eric Berquist
613d0b7e8e emacs: add variant treesitter for Emacs 29+ (#34134) 2022-11-26 23:45:00 +01:00
Wouter Deconinck
21c29ee375 prmon: Add missing depends_on py-numpy, py-pandas when +plot (#34123) 2022-11-26 23:43:25 +01:00
Luke Diorio-Toth
e236339e5a aragorn: add newer versions and URL (#34140) 2022-11-26 23:34:59 +01:00
Luke Diorio-Toth
7a03525c35 minced: add v0.4.2 (#34141) 2022-11-26 23:30:56 +01:00
Hans Fangohr
17ca86a309 Octopus: branch for Octopus development is now "main" (#34128) 
Historically, development of the Octopus code was done on the "develop" branch
on https://gitlab.com/octopus-code/octopus but now development takes place on
"main" (since Q3 2022).

The suggestion in this PR to solve the issue is to keep the spack label
`octopus@develop` as this better indicates this is the development branch on git
than `octopus@main`, but of course to use the `main` branch (there is no choice
here - the `develop` branch is not touched anymore). Sticking to
`octopus@develop` as the version label also keeps backwards compatibility.
 2022-11-26 15:29:49 -07:00
marcost2
ce71a38703 nvtop: Add 2.0.3, 2.0.4, 3.0.0 and 3.0.1 (#34145) 
* And add the option to compile support for Intel GPU's
 2022-11-26 21:04:48 +01:00
Satish Balay
12c23f2724 Revert "url_exists related improvements (#34095)" (#34144) 
This reverts commit d06fd26c9a.

The problem is that Bitbucket's API forwards download requests to an S3 bucket using a temporary URL. This URL includes a signature for the request, which embeds the HTTP verb. That means only GET requests are allowed, and HEAD requests would fail verification, leading to 403 erros. The same is observed when using `curl -LI ...`
 2022-11-26 17:56:36 +00:00
Carlos Bederián
b8ae0fbbf4 amdblis: symlink libblis-mt to libblis (#32819) 2022-11-26 00:33:29 +01:00
Sebastian Ehlert
6b5c86e0be toml-f: add 0.2.4 and 0.3.1 (#34025) 2022-11-25 16:29:58 -07:00
Victoria Cherkas
1ed1b49c9b metkit, fdb: Add latest versions (#33289) 2022-11-25 23:54:51 +01:00
petertea
4265d5e111 Update TotalView versions and website (#33418) 
Co-authored-by: Peter Thompson <thompson81@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-11-25 23:42:56 +01:00
snehring
8c0fb91d4e ffmpeg: adding version 5.1.2 (#33758) 
* ffmpeg: add version 5.1.2 and switch to conditional variants

Also: py-torchvision: restrict ffmpeg dependency
 2022-11-25 23:37:17 +01:00
Thomas Madlener
567532b9e5 lcio: Add new version and restrictions on c++ standard (#33997) 2022-11-25 23:08:23 +01:00
Adam J. Stewart
47d59e571e py-pandas: add v1.5.2 (#34091) 2022-11-25 23:03:16 +01:00
Adam J. Stewart
93ff19c9b7 py-pytorch-lightning: add v1.8.3 (#34096) 2022-11-25 22:59:39 +01:00
Harmen Stoppels
2167cbf72c Track locks by (dev, ino); close file handlers between tests (#34122) 2022-11-25 10:57:33 +01:00
Sergey Kosukhin
7a5e527cab zlib: fix shared libraries when '%nvhpc' (#34039) 2022-11-24 20:10:18 +01:00
iarspider
a25868594c Add checksum for py-uncertainties 3.1.7 (#34116) 2022-11-24 12:11:58 -06:00
Brent Huisman
dd5263694b Arbor: Yank v0.5 (#34094) 
v0.5 does not build due to a change in setting `arch` introduced in v0.5.2, compatibility with which was not kept in `arbor/package.py`. Since v0.5.2 is compatible with `arbor/package.py`, and is API compatible with v0.5, any users relying on v0.5 can rely on v0.5.2.
 2022-11-24 11:19:32 +01:00
Thomas-Ulrich
5fca1c9aff hipsycl: add v0.9.3 (#34052) 2022-11-23 23:14:01 -07:00
Tim Haines
1d7393c281 dyninst: add checksums for all supported versions (#34051) 2022-11-24 03:45:56 +01:00
Jen Herting
f0bc551718 New package: py-kt-legacy (#34104) 
* first build of keras-tuner with dataset kt-legacy

* [py-kt-legacy] fixed homepage

* [py-kt-legacy] depends on setuptools

* [py-kt-legacy] fixed import

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: Sid Pendelberry <sid@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-11-23 19:26:21 -07:00
Adam J. Stewart
46b9a09843 py-cartopy: older versions don't support newer matplotlib (#34109) 2022-11-24 02:44:20 +01:00
Stephen Sachs
c0898565b9 openfoam: Fix openfoam@2012_220610 %intel (add #include <array>) (#34088) 2022-11-24 02:34:40 +01:00
Benjamin Meyers
3018e7f63d Add py-urwid@2.1.2 (#34103) 
* Add py-urwid@2.1.2

* [@spackbot] updating style on behalf of meyersbs
 2022-11-23 19:25:02 -06:00