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Author SHA1 Message Date
Xavier Delaruelle
0b3e860608 environment-modules: add version 4.6.0 (#18686) 2020-09-16 10:39:55 -05:00
Robert Pavel
2f0565de64 Added spackage for cosmoflow-benchmark proxy app (#18685) 
* Initial Draft of Cosmoflow Spackage

Need to add in logic to streamline cpu/gpu builds

* Added ~cuda logic to cosmoflow spackage

Added logic to support a ~cuda build for cosmoflow

* Requested Changes to Cosmoflow Spackage

Made requested changes to cosmoflow spackage
 2020-09-16 10:18:01 -05:00
Severin Strobl
e41c3ad1fc Likwid versions >= 5.0.0 depend on Lua 5.2. (#18675) 
* Likwid versions >= 5.0.0 depend on Lua 5.2.

According to https://github.com/RRZE-HPC/likwid/issues/324 recent
versions of Likwid require Lua 5.2.

* Update var/spack/repos/builtin/packages/likwid/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-09-16 10:16:08 -05:00
Jason Lee
1a9f97fd0d jemalloc: Use AutotoolsPackage and allow for arbitrary public API prefixes (#18680) 
Removed je variant
 2020-09-15 20:37:05 -05:00
Greg Sjaardema
6a3583f181 MatIO: Update repository and add new versions (#18683) 
MatIO development has switched to github from sourceforge.  Updated the `git` and `url` variables and added the four new versions (1.5.14 -- 1.5.17) that have been released since the last update of this package.
 2020-09-15 16:43:45 -05:00
arjun-raj-kuppala
bad9f2bc28 AMD ROCmValidationSuite recipe for 3.5.0 and 3.7.0 (#18678) 
* AMD ROCmValidationSuite recipe for 3.5.0 and 3.7.0

* Updated the PR comments for rocmvalidationsuite recipe
 2020-09-15 13:16:41 -05:00
Nikolay Simakov
1b1bfd883a namd: Added optimization auto-selection for skylake-X+ CPU for 2.14 and 2.15a1 (AVX512 tile) (#18671) 2020-09-15 10:08:26 -05:00
Sergey Kosukhin
5cff304809 CLAW: update the package (#18673) 2020-09-15 10:04:59 -05:00
Tom Payerle
6752a1c377 Qbox minor issues 18664 (#18665) 
* qbox: install to correct directory structure

* qbox: Have qb executable put in bin rather than src subdir

* qbox: Fix python script shebangs to use python from path

* qbox: Add dependencies on gnuplot, python2 for utilities

* qbox: fix flake8 issue

* qbox: Add $prefix/util to PATH
 2020-09-15 09:54:26 -05:00
ketsubouchi
33e8dcad99 nseg: add return 0; to void functions (#18481) 2020-09-15 10:24:51 +02:00
Adam J. Stewart
5e6875008c fish: add dependencies, patch MacOS (#18526) 2020-09-15 08:43:53 +02:00
Adam J. Stewart
5f0c3427ae py-cmocean: added new package at v2.0 (#18614) 2020-09-15 08:36:26 +02:00
Adam J. Stewart
2af9e44340 Add setuptools run-time dependency to various Python packages (#18616) 2020-09-15 08:30:59 +02:00
Adam J. Stewart
b3ee04c6ef py-jupyterlab-pygments: added new package at v0.1.1 (#18627) 2020-09-15 08:30:08 +02:00
Adam J. Stewart
f7030287d3 py-nest-asyncio: add new package at v1.4.0 (#18629) 2020-09-15 08:28:51 +02:00
Adam J. Stewart
445988011c py-ipykernel: added v5.3.4, moved url to PyPI (#18630) 2020-09-15 08:28:17 +02:00
Adam J. Stewart
ef37852bb4 py-ipython: added v7.18.1 (#18631) 2020-09-15 08:26:27 +02:00
Adam J. Stewart
40a66317e8 py-jupyter-client: added v6.1.7, moved url to PyPI (#18632) 2020-09-15 08:25:39 +02:00
Adam J. Stewart
792c48a558 py-jupyter-core: updated the type of the setuptools dependency (#18633) 2020-09-15 07:42:28 +02:00
Adam J. Stewart
0448ade7b5 py-jupyterlab-server: added v1.2.0 (#18634) 2020-09-15 07:39:30 +02:00
Adam J. Stewart
defde398c4 py-argon2-cffi: added new package at v20.1.0 (#18626) 2020-09-15 07:38:16 +02:00
Adam J. Stewart
77d20906c0 py-jupyterlab: added v2.2.7 (#18635) 2020-09-15 07:20:15 +02:00
Adam J. Stewart
682223f1f4 py-nbformat: add v5.0.7, moved url to PyPI (#18637) 2020-09-15 07:18:12 +02:00
Adam J. Stewart
60a5a176fb py-terminado: added v0.8.3 (#18639) 2020-09-15 07:15:38 +02:00
Adam J. Stewart
c59836222e py-traitlets: added v5.0.4, moved url to PyPI (#18640) 2020-09-15 07:15:00 +02:00
Robert Pavel
4fc2370559 Added Missing Tag to Cradl Spackage (#18669) 
Added missing proxy apps tag to cradl spackage
 2020-09-14 18:55:53 -06:00
Robert Pavel
a2673aeddd CRADL Machine Learning Proxy Spackage (#18668) 
* Initial CRADL Spackage Work

Currently resolving ```--single-version-externally-managed``` error

* Fixed GPUtil Issues

Thanks to Vinay Ramakrishnaiah for overwriting install

* Finished CRADL Install Function

Finished CRADL install function which is basically copying the scripts
to the install directory. Also resolved flake8 issues for PR purposes
 2020-09-14 14:25:49 -06:00
Simon Frasch
49512e21ab SIRIUS: Update dependencies (#18622) 
* sirius: Fixed dependency spfft when build with +rocm

* sirius: Added new dependency spla for develop build

* sirius: Added maintainer
 2020-09-14 12:23:32 -05:00
Scott Wittenburg
f537d5bb58 Make sure each develop pipeline tests associated commit 2020-09-14 10:37:42 -06:00
Scott Wittenburg
28ef5b1204 Do not assume we sit in the directory where the env file lives. 2020-09-14 10:37:42 -06:00
Scott Wittenburg
031490f6aa Remove :<name> interpolation, add SPACK_VERSION variables 
Also fix issues with documentation to reflect changes
 2020-09-14 10:37:42 -06:00
Scott Wittenburg
bf90cdd6c7 Document pipeline keys which can be global but overridden 
Update pipelines documentation to describe how 'tags', 'variables',
'image', 'before_script', 'script', and 'after_script' can be
supplied at the top level, to be used by any of the runner mappings,
and also overridden by any of the runner mappings.

Also show an example of capturing the custom spack SHA at pipeline
generation time, so all jobs are sure to run with the same version
of spack, as a means to illustrate the $env:VARIABLE_NAME syntax.
 2020-09-14 10:37:42 -06:00
Scott Wittenburg
d9e0718c9d Allow overridable global runner attributes 2020-09-14 10:37:42 -06:00
Scott Wittenburg
e686f1500e Update pipeline documentation to describe user-provided scripts 2020-09-14 10:37:42 -06:00
Scott Wittenburg
e18612a321 Add test for variable interpolation and scripts 2020-09-14 10:37:42 -06:00
Scott Wittenburg
2386f7582a Support variable interpolation at pipeline generation time 2020-09-14 10:37:42 -06:00
Scott Wittenburg
ace52bd476 Provide your own script, before_script, and after_script 2020-09-14 10:37:42 -06:00
Massimiliano Culpo
4ca7d46e15 Fix a typo in test/concretize.pyi (#18662) 2020-09-14 09:58:14 -05:00
darmac
5f47170492 Add new package: webbench (#18650) 
* Add new package: webbench

* Update var/spack/repos/builtin/packages/webbench/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-09-14 09:57:40 -05:00
ketsubouchi
41b68741ec cpio: add --rtlib=compiler-rt for %fj (#18619) 
* cpio: add --rtlib=compiler-rt for %fj

* cpio: simplify if

* Update var/spack/repos/builtin/packages/cpio/package.py

This seems better.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-09-14 09:55:47 -05:00
t-nojiri
a250006449 ngmlr: support for aarch64 (#18621) 
* ngmlr: support for aarch64

* ngmlr: Fixed patch file
 2020-09-13 23:14:59 -05:00
ketsubouchi
3cfce42563 nek5000: Support Fujitsu fortran (#18659) 2020-09-13 23:14:04 -05:00
Paul
c29b74e7ad Updated FZF package for newer versions. (#18608) 
* Support for external find.
* Added latest version (0.22.0) and conditions to package to continue
support for older versions.
 2020-09-13 11:27:56 -05:00
Joseph Wang
58f101de88 use github for download (#18657) 2020-09-13 10:23:46 -05:00
Andrew W Elble
a734dabf2b new package: py-reproject (#18641) 
* new package: py-reproject
add setuptools build/run dep to py-astropy-healpix

* fixes

* fix
 2020-09-12 15:37:34 -05:00
darmac
85f7a8bf71 Add new package: delta (#18648) 2020-09-12 15:37:14 -05:00
darmac
10dab474ce cvs: add a patch for segv issue (#18649) 2020-09-12 09:47:39 -05:00
darmac
e355fc16ad Add new package: dbxtool (#18651) 2020-09-12 09:45:05 -05:00
darmac
3211ac5136 Add new package: geoip-api-c (#18653) 2020-09-12 09:44:28 -05:00
darmac
cde4654525 Add new package: libspiro (#18654) 2020-09-12 09:44:02 -05:00