Commit Graph

34209 Commits

Author SHA1 Message Date
Adam J. Stewart
cafc21c43d py-lightly: add v1.4.5 (#37625) 2023-05-12 11:39:03 -07:00
Adam J. Stewart
72699b43ab py-dill: add v0.3.1.1 (#37415) 2023-05-12 11:37:51 -07:00
MatthewLieber
6c85f59a89 Osu/mvapich2.3.7 1 (#37636)
* add 3.0b release

* adding mvapich2 version 2.3.7-1

---------

Co-authored-by: Matt Lieber <lieber.31@osu.edu>
2023-05-12 11:30:05 -07:00
Nathan Hanford
eef2536055 Allow buildcache specs to be referenced by hash (#35042)
Currently, specs on buildcache mirrors must be referenced by their full description. This PR allows buildcache specs to be referenced by their hashes, rather than their full description.

### How it works

Hash resolution has been moved from `SpecParser` into `Spec`, and now includes the ability to execute a `BinaryCacheQuery` after checking the local store, but before concluding that the hash doesn't exist.

### Side-effects of Proposed Changes

Failures will take longer when nonexistent hashes are parsed, as mirrors will now be scanned.

### Other Changes

- `BinaryCacheIndex.update` has been modified to fail appropriately only when mirrors have been configured.
- Tests of hash failures have been updated to use `mutable_empty_config` so they don't needlessly search mirrors.
- Documentation has been clarified for `BinaryCacheQuery`, and more documentation has been added to the hash resolution functions added to `Spec`.
2023-05-12 10:27:42 -07:00
Massimiliano Culpo
e2ae60a3b0 Update archspec to v0.2.1 (#37633) 2023-05-12 18:59:58 +02:00
Chris Green
d942fd62b5 [root] New version 6.28.04 with C++20 support (#37640)
* Add FNAL Spack team to maintainers.
* New version 6.28/04.
* Support C++20 with ROOT >= 6.28.04.
2023-05-12 09:50:48 -07:00
Andrey Parfenov
99d511d3b0 Add more variants for STREAM to customize build (#37283)
* Added STREAM builds customization

* Changed stream_type to enum

* fix code style issues

Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>

* rm not necessary optimization

Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>

---------

Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
Co-authored-by: iermolae <igor.ermolaev@intel.com>
2023-05-12 12:17:59 -04:00
Adam J. Stewart
ab8661533b GDAL: add v3.7.0 (#37598) 2023-05-12 12:13:10 -04:00
Robert Cohn
f423edd526 intel-oneapi-mkl: support gnu openmp (#37637)
* intel-oneapi-mkl: support gnu openmp

* intel-oneapi-mkl: support gnu openmp
2023-05-12 12:03:19 -04:00
Manuela Kuhn
0a4d4da5ce py-rsatoolbox: add 0.0.5, 0.1.0 and 0.1.2 (#37595)
* py-rsatoolbox: add 0.0.5, 0.1.0 and 0.1.2 from wheels

* py-setuptools: add 63.4.3

* remove wheels and open up requirements

* Fix style

* Update var/spack/repos/builtin/packages/py-rsatoolbox/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-rsatoolbox/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Change version for python restriction

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-12 10:32:12 -05:00
Manuela Kuhn
845187f270 py-mne: add 1.4.0 and py-importlib-resources: add 5.12.0 (#37624)
* py-mne: add 1.4.0 and py-importlib-resources: add 5.12.0

* Fix style

* Update var/spack/repos/builtin/packages/py-mne/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-12 10:31:35 -05:00
Lehman Garrison
9b35c3cdcc Update tensorflow variant defaults to match upstream defaults (#37610)
* Update tensorflow variant defaults to match project's defaults

* Apply code style
2023-05-12 10:27:51 -05:00
Robert Cohn
fe8734cd52 Fix logic in setting oneapi microarchitecture flags (#37634) 2023-05-12 10:58:08 -04:00
Chris Green
40b1aa6b67 [geant4,geant4-data] New version 10.7.4 (#37382) 2023-05-12 15:20:50 +01:00
Eduardo Rothe
ced8ce6c34 cudnn: add versions 8.5.0, 8.6.0, 8.7.0 (#35998) 2023-05-12 07:38:11 -04:00
Tamara Dahlgren
9201b66792 AML: Convert to new stand-alone test process (#35701) 2023-05-12 13:22:11 +02:00
Massimiliano Culpo
fd45839c04 Improve error message for buildcaches (#37626) 2023-05-12 11:55:13 +02:00
Mikael Simberg
2e25db0755 Add pika 0.15.1 (#37628) 2023-05-12 11:45:30 +02:00
Massimiliano Culpo
ebfc706c8c Improve error messages when Spack finds a too new DB / lockfile (#37614)
This PR ensures that we'll get a comprehensible error message whenever an old
version of Spack tries to use a DB or a lockfile that is "too new".

* Fix error message when using a too new DB
* Add a unit-test to ensure we have a comprehensible error message
2023-05-12 08:13:10 +00:00
Steven R. Brandt
644a10ee35 Coastal Codes (#37176)
* Coastal codes installation
* Finished debugging swan.
* Fix formatting errors identified by flake8
* Another attempt to fix formatting.
* Fixed year in header.
* Fixed maintainers syntax and other details from review comments.
* Remove redundant url.

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-05-12 00:57:59 -04:00
snehring
bb96e4c9cc py-pysam: adding version 0.21.0 (#37623)
* py-pysam: adding version 0.21.0

* Update var/spack/repos/builtin/packages/py-pysam/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-12 00:47:53 -04:00
Tamara Dahlgren
d204a08aea Install/update the qt dependency (#37600) 2023-05-11 22:58:33 -05:00
Tamara Dahlgren
8e18297cf2 Environments: store spack version/commit in spack.lock (#32801)
Add a section to the lock file to track the Spack version/commit that produced
an environment. This should (eventually) enhance reproducibility, though we
do not currently do anything with the information. It just adds to provenance
at the moment.

Changes include:
- [x] adding the version/commit to `spack.lock`
- [x] refactor `spack.main.get_version()
- [x] fix a couple of environment lock file-related typos
2023-05-11 23:13:36 -04:00
MatthewLieber
b06d20be19 add 3.0b release (#37599)
Co-authored-by: Matt Lieber <lieber.31@osu.edu>
2023-05-11 17:10:15 -07:00
Alec Scott
a14d6fe56d gegl: add v0.4.44 (#37516) 2023-05-11 15:52:22 -07:00
eugeneswalker
47ec6a6ae5 e4s ci: trilinos +rocm: enable belos to fix build failure (#37617) 2023-05-11 14:02:20 -07:00
Massimiliano Culpo
5c7dda7e14 Allow using -j to control the parallelism of concretization (#37608)
fixes #29464

This PR allows to use
```
$ spack concretize -j X
```
to set a cap on the parallelism of concretization from the command line
2023-05-11 13:29:17 -07:00
Dom Heinzeller
0e87243284 libpng package: fix build error on macOS arm64 (#37613)
Turn off ARM NEON support on MacOS arm64

Co-authored-by: Stephen Herbener <stephen.herbener@gmail.com>
2023-05-11 16:27:43 -04:00
Nichols A. Romero
384f5f9960 Update Intel Pin package up to 3.27 (#37470) 2023-05-11 19:06:03 +02:00
Andrey Parfenov
c0f020d021 add openmp_max_threads variant and enable avx 512 optimizations for icelake (#37379)
* add openmp_max_threads variant and enable avx 512 optimizations for icelake and cascadelake

Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>

* revert manual enabling of avx512 for icelake and cascadelake

Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>

---------

Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
2023-05-11 09:23:04 -05:00
Tamara Dahlgren
dc58449bbf caliper: convert to new stand-alone test process (#35691) 2023-05-11 14:40:02 +02:00
Tamara Dahlgren
d8a72b68dd bricks: convert to new stand-alone test process (#35694) 2023-05-11 14:39:09 +02:00
Mosè Giordano
040c6e486e julia: Fix llvm shlib symbol version for v1.9 (#37606) 2023-05-11 08:22:40 -04:00
Harmen Stoppels
4fa7880b19 lmod: fix CompilerSpec concrete version / range (#37604) 2023-05-11 12:00:07 +02:00
Nisarg Patel
f090b05346 Update providers of virtual packages related to Intel OneAPI (#37412)
* add a virtual dependency name instead of complete package name

* add OneAPI components as providers of virtual packages

* Revert the default of tbb

---------

Co-authored-by: Nisarg Patel <nisarg.patel@lrz.de>
2023-05-11 05:58:24 -04:00
Mikael Simberg
0c69e5a442 Add fmt 10.0.0 (#37591) 2023-05-11 04:57:47 -04:00
Massimiliano Culpo
8da29d1231 Improve the message for errors in package recipes (#37589)
fixes #30355
2023-05-11 10:34:39 +02:00
Massimiliano Culpo
297329f4b5 Improve error message for missing "command" entry in containerize (#37590)
fixes #21242
2023-05-11 10:33:51 +02:00
Mosè Giordano
1b6621a14b julia: Add v1.9.0 (#35631) 2023-05-11 10:30:52 +02:00
Peter Scheibel
bfa54da292 Allow clingo to enforce flags when they appear in requirements (#37584)
Flags are encoded differently from other variants, and they need a choice rule to
ensure clingo has a choice to impose (or not) a constraint.
2023-05-11 09:17:16 +02:00
Jaelyn Litzinger
730ab1574f Upgrade exago's petsc dependency to v3.19.0 (#37092)
* add petsc 3.19 for exago@develop
* simplify version syntax
2023-05-10 18:25:11 -07:00
Harmen Stoppels
2c17c4e632 ci: remove --mirror-url flag (#37457)
The flags --mirror-name / --mirror-url / --directory were deprecated in 
favor of just passing a positional name, url or directory, and letting spack
figure it out.

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2023-05-10 16:34:29 -06:00
John W. Parent
ec800cccbb Windows: Fix external detection for service accounts (#37293)
Prior to this PR, the HOMEDRIVE environment variable was used to
detect what drive we are operating in. This variable is not available
for service account logins (like what is used for CI), so switch to
extracting the drive from PROGRAMFILES (which is more-widely defined).
2023-05-10 18:12:58 -04:00
John W. Parent
85cc9097cb Windows: prefer Python decompression support (#36507)
On Windows, several commonly available system tools for decompression
are unreliable (gz/bz2/xz). This commit refactors `decompressor_for`
to call out to a Windows or Unix-specific method:

* The decompressor_for_nix method behaves the same as before and
  generally treats the Python/system support options for decompression
  as interchangeable (although avoids using Python's built-in tar
  support since that has had issues with permissions).
* The decompressor_for_win method can only use Python support for
  gz/bz2/xz, although for a tar.gz it does use system support for
  untar (after the decompression step). .zip uses the system tar
  utility, and .Z depends on external support (i.e. that the user
  has installed 7zip).

A naming scheme has been introduced for the various _decompression
methods:

* _system_gunzip means to use a system tool (and fail if it's not
    available)
* _py_gunzip means to use Python's built-in support for decompressing
    .gzip files (and fail if it's not available)
* _gunzip is a method that can do either
2023-05-10 18:07:56 -04:00
snehring
830ee6a1eb py-gtdbtk: adding version 2.3.0 (#37581)
* py-gtdbtk: adding version 2.3.0

* py-gtdbtk: adding missing pydantic dep

* py-gtdbtk: restrict pydantic dep
2023-05-10 16:58:42 -05:00
Alec Scott
0da7b83d0b fd: merge fd-find with fd (#37580) 2023-05-10 14:29:13 -07:00
SoniaScard
f51a4a1ae1 Ophidia-analytics-framework, ophidia-io-server: Work (#36801)
* ophidia-io-server: new package at v1.7
* ophidia-io-server: Fix package
* ophidia-analytics-framework: new package at v1.7
* Fix code style in ophidia-analytics-framework
* Merge
* ophidia-analytics-framework: update package to v1.7.3
* Update package.py
* Fix style

---------

Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
Co-authored-by: Donatello Elia <eldoo@users.noreply.github.com>
2023-05-10 08:38:43 -07:00
H. Joe Lee
e49f10a28e fix(hdf5): h5pfc link failure (#37468)
* fix(hdf5): h5pfc link failure
  develop branch doesn't need linking any more.
  See: acb186f6e5
* [@spackbot] updating style on behalf of hyoklee

---------

Co-authored-by: hyoklee <hyoklee@users.noreply.github.com>
2023-05-10 08:33:27 -07:00
Harmen Stoppels
1d96fdc74a Fix compiler version issues (concrete vs range) (#37572) 2023-05-10 17:26:22 +02:00
Robert Cohn
8eb1829554 intel-oneapi-mkl: add threading support (#37586) 2023-05-10 10:47:57 -04:00