Commit Graph

14631 Commits

Author SHA1 Message Date
Jen Herting
0dcb0d885f [py-py4j] added version 0.10.9 (#21625) 2021-02-11 18:16:38 +00:00
Jen Herting
f7a05e0c61 [py-pyspark] new version and limited python for old versions (#21602)
* fixed install with ver 3 and python 3.0

* replaced @3 with @2.999

* [py-pyspark] added version requirements for py-py4j

* [py-pyspark] all versions require at least version 2.7 of python

* [py-pyspark] fixed comma syntax

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-02-11 11:16:29 -06:00
vvolkl
3d6e9e172d genfit: set the ROOT prefix when building genfit (#21589)
Co-authored-by: lintao <lintao51@gmail.com>
2021-02-11 17:03:20 +01:00
Harmen Stoppels
f255c3eb76 libxc: add v5.1.0 (#21593) 2021-02-11 17:01:21 +01:00
Harmen Stoppels
882b8f9d42 spglib: add versions up to v1.16.1 (#21624) 2021-02-11 15:58:15 +00:00
Michael Kuhn
91d2c4f7db meson: add 0.56.2 (#21608) 2021-02-11 16:46:01 +01:00
Erik Schnetter
7f003a77dd nsimd: add v2.1 (#21623)
Updated variants and conflicts accordingly
2021-02-11 15:41:46 +00:00
Michael Kuhn
3268cf4b96 libfyaml: new package (#21604) 2021-02-11 16:41:16 +01:00
Michael Kuhn
ef5b15be40 libcyaml: new package (#21598) 2021-02-11 16:40:28 +01:00
Michael Kuhn
da46da1c2a libyaml: add 0.2.5 (#21597) 2021-02-11 16:40:06 +01:00
Chuck Atkins
a57598defe doxygen: fix gcc getting stuck in an infinite loop (#21614) 2021-02-11 16:35:51 +01:00
Michael Kuhn
e2084ea6fd glib: add 2.66.6 (#21605) 2021-02-11 16:27:57 +01:00
M. Eric Irrgang
dea9334189 Apply compiler filters to GROMACS installation. (#21621)
The GROMACS package embeds references to its build tool chain.
Use the Spack utilities to make sure these references are correct
outside of the isolated Spack build environment.
2021-02-11 14:52:32 +00:00
victorusu
fd8eac7052 Add sanity checks to reframe recipe (#21622) 2021-02-11 15:35:57 +01:00
victorusu
2fbc8caf86 pygelf: add v0.4.0 (#21620) 2021-02-11 15:23:55 +01:00
M. Eric Irrgang
944cb5dec6 Update GROMACS package (#21617)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-02-11 15:16:27 +01:00
Michael Kuhn
fc00944900 meson: remove cmake dependency (#21607)
cmake was added as a runtime dependency to meson in #20449. This
introduces an unnecessary implicit cmake dependency, which increases
build time for meson considerably. cmake is only one of many methods for
finding dependencies (pkg-config, qmake etc.), which are also not
runtime dependencies of meson. Add cmake as a build dependency to mesa
instead.
2021-02-10 23:46:52 -05:00
Axel Huebl
48af2ac8f9 adios2: Add 2.7.1 release (#21584)
Add the latest release of ADIOS2.
2021-02-10 23:44:42 -05:00
Jen Herting
5828a2cd31 [py-chalice] py-typing causes issues with python >= 3.5 (#21202)
* [py-chalice] py-typing causes issues with python >= 3.5

* [py-chalice] changed upperbound on typing
2021-02-10 21:31:02 +00:00
eugeneswalker
e15a3438a8 ascent: add version v0.6.0 (#21573) 2021-02-10 10:14:16 -08:00
a-saitoh-fj
24dd5d12a5 py-llvmlite: Changing build options when using the FUJITSU compiler (#21585) 2021-02-10 09:58:10 -06:00
vvolkl
08972014f8 [py-uproot4] add new versions (#21588) 2021-02-10 09:57:10 -06:00
a-saitoh-fj
bd836540f2 New package: py-dask-sphinx-theme (#21582) 2021-02-10 10:22:03 +01:00
a-saitoh-fj
cf9a7bc7f6 pandoc modified:package.py (#21581) 2021-02-10 10:20:47 +01:00
h-denpo
7d48bbfd3a raxml-ng: Fixed typo: (#21580) 2021-02-10 10:17:28 +01:00
Matt Schramm
175d614bc6 Update package.py (#21577) 2021-02-10 10:16:22 +01:00
Shintaro Iwasaki
ca6ec59a86 sollve: deprecate the sollve package (#21578) 2021-02-10 01:49:20 +00:00
Jen Herting
a938cc512b New package: py-moviepy (#20751)
* [py-moviepy] created template

* [py-moviepy] added dependencies

* [py-moviepy] removed fixmes, added homepage and description

* [py-moviepy] updated to pypi and updated checksum

* [py-moviepy] added setuptools dependency

* [py-moviepy] more specific version limit

* [py-moviepy] added checksum for version 1.0.1

* [py-moviepy] numpy restriction not nesessary here
2021-02-09 23:18:51 +00:00
kean-smullen-nnl
32056da93b New Package: py-xgboost (#21470)
* new python package py-xgboost added

* py-xgboost spack style applied

* py-xgboost: Addressing PR #21470 comments. Added variant descriptions and fixed scikit-learn when clause
2021-02-09 23:12:20 +00:00
Satish Balay
42e8a64660 xsdk: update petsc4py, strumpack dependencies (#21569) 2021-02-10 00:10:09 +01:00
Adam J. Stewart
d580ac302d 3DTK: add new package (#20931)
* 3DTK: add new package

* Add missing opencv variants

Co-authored-by: Michael Kuhn <michael@ikkoku.de>

* Fix cmake version req, add eigen dep

* Prefer trunk version

* Tell 3dtk where to find eigen

* Fix installation

* Fix installation

Co-authored-by: Michael Kuhn <michael@ikkoku.de>
2021-02-09 16:45:41 -06:00
Ethan Stam
865d38afa7 ParaView, LLVM: add -shared-intel to solve intel linking failures (#18195) 2021-02-09 23:26:49 +01:00
Desmond Orton
2697c73097 New Package r-reproducible (#21434) 2021-02-09 14:11:14 -08:00
Glenn Johnson
d01edbb48e Fix groff build with long interpeter line (#21549)
This PR fixes the case where groff fails to build if the spack install
path is really long. There are a couple of perl scripts that get built,
and used, during the build phase that will fail when the perl
interpreter line is too long. Filtering the lines will not work because
the files don not exist after the configure phase and patching after the
build phase is too late.  This PR runs the scripts explicitly with the
spack perl via the $(PERL) variable in the call to the script.
2021-02-09 13:54:51 -08:00
Glenn Johnson
f7a9fbc688 Update the Spack R BioConductor packages to Bioconductor-3.12 (#21575) 2021-02-09 15:35:30 -06:00
takanori-ihara
fe863b68b2 biobambam2: Add test method and test scripts. (#21504)
Co-Authored-By: Tamara Dahlgren <dahlgren1@llnl.gov>
2021-02-09 12:33:55 -08:00
Jordan Ogas
02a4abadfa add charliecloud 0.22 (#21574) 2021-02-09 12:15:03 -08:00
Dr. Christian Tacke
11711fcbe5 root: 6.22.04 works with xrootd 5 (#21572)
ROOT version 6.22.04 has been ported to support xrootd 5.
So let's support that.

See: https://github.com/root-project/root/commit/a33b156e3bf809343eda08150666154a
2021-02-09 11:33:14 -08:00
Evan Bollig
cc6d055786 Relion 3.1.1 patch for Ubuntu18.04 (#21556) 2021-02-09 11:07:06 -08:00
Cyrus Harrison
533d4bbc3c add conduit 0.7.0 release (#21558) 2021-02-09 11:02:30 -08:00
Adam J. Stewart
7ccb9992a6 Procedure to deprecate old versions of software (#20767)
* Procedure to deprecate old versions of software

* Add documentation

* Fix bug in logic

* Update tab completion

* Deprecate legacy packages

* Deprecate old mxnet as well

* More explicit docs
2021-02-09 13:51:18 -05:00
Toyohisa Kameyama
b802e75274 penblas: fix link error in dependent packages. (#21561) 2021-02-09 09:53:09 -08:00
Harmen Stoppels
0760c7c704 Add more cmake patch releases (#21562) 2021-02-09 09:48:34 -08:00
Adam J. Stewart
341eec8dfb py-pandas: add v1.2.2 (#21568) 2021-02-09 09:32:58 -08:00
Shintaro Iwasaki
3c874e22b5 bolt: add new versions (#21550) 2021-02-09 09:43:12 +01:00
Sreenivasa Murthy Kolam
bff4469d8f replace libelf with elfutils in hip-rocclr (#21421) 2021-02-09 08:21:05 +01:00
Jen Herting
58f3d0986d New package: py-msgpack-numpy (#21548)
* [py-msgpack-numpy] created template

* [py-msgpack-numpy] added dependencies

* [py-msgpack-numpy] added homepage and description. removed fixmes. fixed copyright date

* [py-msgpack-numpy] url -> pypi
2021-02-08 21:20:07 +00:00
Andrew W Elble
dc1a05d273 py-tensorflow-estimator: update for 2.4.0 (#21546)
* py-tensorflow-estimator: update for 2.4.0

* build/run deptypes, switch to common tmpfile logic
2021-02-08 21:14:20 +00:00
Andrew W Elble
7fd8b775ad py-tensorboard: add new versions (#21545) 2021-02-08 14:38:09 -06:00
ketsubouchi
0e3b12776c xforms: new package (#21535) 2021-02-08 12:27:36 -08:00