Commit Graph

35027 Commits

Author SHA1 Message Date
Adam J. Stewart
ab60bfe36a py-numpy: add v1.26.2 (#41046) 2023-11-13 16:41:05 -07:00
John W. Parent
8bcc3e2820 CMake Package: support building ~ownlibs on Windows (#38758) 2023-11-13 14:26:33 -08:00
Hariharan Devarajan
388f141a92 Release Brahma v0.0.2 (#40994) 2023-11-13 14:25:12 -08:00
Todd Gamblin
f74b083a15 info: improve coverage (#41001)
Tests didn't cover the new `--variants-by-name` parameter in #40998.
Add some parameterization to hit that.

This changeset makes me think that the main section-printing loop in `spack info` isn't
factored so well. It makes it difficult to pass different arguments to different helper
functions.  I could break it out into if statements if folks think that would be cleaner.
2023-11-13 13:45:18 -08:00
heatherkellyucl
5b9d260054 gzip: deprecate <1.13 for vulnerability (#41044) 2023-11-13 13:38:16 -07:00
Greg Becker
4bd47d89db spack diff: allow hashes from mirrors (#41043) 2023-11-13 12:27:52 -08:00
Daniel Arndt
96f3c76052 dealii: add v9.5.0, v9.5.1 (#40747)
* dealii: 9.5.0

* kokkos+cuda_lambda

* dealii ^kokkos@3.7: require +cuda +cuda_lambda +wrapper

* Added 9.5.1, try ~cgal when +cuda

* Forward Cuda architecture request

* Remove workaround

* Try not enforcing the Kokkos compiler

* Enforce using nvcc_wrapper with Trilinos+Cuda

* Don't define CMAKE_*_COMPILER to point to MPI wrappers

* Use the same compiler as Trilinos/Kokkos

* Only check for Trilinos compiler

* Disable Trilinos+Cuda

* Disable Cuda support

* Try CUDA build without ninja

* Combined examples and examples_compile

* Use f-string for cuda_arch

* p -> _package

* Indentation

* Fix up f-string

---------

Co-authored-by: Luca Heltai <luca.heltai@sissa.it>
Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-11-13 12:29:55 -06:00
H. Joe Lee
9c74eda61f hdf5: add a new variant for enabling sub-filing VFD (#40804) 2023-11-13 11:18:02 -07:00
dependabot[bot]
d9de93a0fc build(deps): bump black from 23.10.1 to 23.11.0 in /lib/spack/docs (#40967)
Bumps [black](https://github.com/psf/black) from 23.10.1 to 23.11.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.10.1...23.11.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-13 08:18:06 -07:00
Wouter Deconinck
3892fadbf6 qwt: conflict with qt-base (Qt6) (#40883) 2023-11-13 12:42:37 +01:00
Glenn Horton-Smith
62b32080a8 epics-base: patch to avoid failure on "perl xsubpp" when "xsubpp" otherwise works fine. (#40849) 2023-11-13 12:29:51 +01:00
Wanlin Wang
09d66168c4 riscv-gnu-toolchain: add v2023.09.13 -> v2023.10.18 (#40854) 2023-11-13 12:19:09 +01:00
Tuomas Koskela
d7869da36b conquest: add build system changes and library paths (#40718) 2023-11-13 12:13:53 +01:00
Mikael Simberg
b6864fb1c3 Add license directives to various packages (#41039) 2023-11-13 04:03:48 -07:00
Harmen Stoppels
e6125061e1 Compiler.debug_flags: drop -gz (#40900)
That enables compression of the debug symbols, it doesn't toggle them on
or off.
2023-11-13 11:33:40 +01:00
dependabot[bot]
491bd48897 build(deps): bump black in /.github/workflows/style (#40968)
Bumps [black](https://github.com/psf/black) from 23.10.1 to 23.11.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.10.1...23.11.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-13 11:18:52 +01:00
Victoria Cherkas
ad4878f770 metkit: add v1.10.2 and v1.10.17 (#40668) 2023-11-13 10:56:52 +01:00
Satish Balay
420eff11b7 superlu-dist: add v8.2.0 (#41004) 2023-11-13 10:55:05 +01:00
Adam J. Stewart
15e7aaf94d py-mypy: add v1.4:v1.7 (#41015) 2023-11-13 10:33:33 +01:00
Adam J. Stewart
bd6c5ec82d py-pandas: add v2.1.3 (#41017) 2023-11-13 10:26:56 +01:00
dependabot[bot]
4e171453c0 build(deps): bump mypy from 1.6.1 to 1.7.0 in /lib/spack/docs (#41020)
Bumps [mypy](https://github.com/python/mypy) from 1.6.1 to 1.7.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.6.1...v1.7.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-13 10:13:26 +01:00
Adam J. Stewart
420bce5cd2 GEOS: add new versions (#41030) 2023-11-13 10:09:58 +01:00
Thomas Gruber
b4f6c49bc0 likwid: add 5.3.0 version (#41008) 2023-11-13 10:09:39 +01:00
David Gardner
da4f2776d2 sundials: add license directive (#41028) 2023-11-13 10:08:28 +01:00
Adam J. Stewart
e2f274a634 PyTorch: allow +openmp on macOS (#41025) 2023-11-13 10:07:18 +01:00
Christian Glusa
15dcd3c65c py-pynucleus: Add variant, modify dependencies (#41006) develop-2023-11-12 2023-11-11 16:24:12 -06:00
Matthew Archer
49c2894def update to latest version (#40905) 2023-11-11 16:16:45 -06:00
Stephen Hudson
1ae37f6720 libEnsemble: add v1.1.0 (#40969) 2023-11-11 16:15:43 -06:00
Adrien Berchet
15f6368c7f Add geomdl package (#40933) 2023-11-11 15:55:08 -06:00
Terry Cojean
57b63228ce Ginkgo: 1.7.0, change compatibility, update option oneapi->sycl (#40874)
Signed-off-by: Terry Cojean <terry.cojean@kit.edu>
2023-11-11 09:00:52 -06:00
Greg Becker
13abfb7013 spack deconcretize command (#38803)
We have two ways to concretize now:
* `spack concretize` concretizes only the root specs that are not concrete in the environment.
* `spack concretize -f` eliminates all cached concretization data and reconcretizes the *entire* environment.

This PR adds `spack deconcretize`, which eliminates cached concretization data for a spec.  This allows
users greater control over what is preserved from their `spack.lock` file and what is reused when not
using `spack concretize -f`.  If you want to update a spec installed in your environment, you can call
`spack deconcretize` on it, and that spec and any relevant dependents will be removed from the lock file.

`spack concretize` has two options:
* `--root`: limits deconcretized specs to *specific* roots in the environment. You can use this to
  deconcretize exactly one root in a `unify: false` environment.  i.e., if `foo` root is a dependent
  of `bar`, both roots, `spack deconcretize bar` will *not* deconcretize `foo`.
* `--all`: deconcretize *all* specs that match the input spec. By default `spack deconcretize`
  will complain about multiple matches, like `spack uninstall`.
2023-11-10 14:55:35 -08:00
Nils Lehmann
b41fc1ec79 new release (#41010) 2023-11-10 11:52:59 -07:00
Henri Menke
124e41da23 libpspio 0.3.0 (#40953)
Co-authored-by: Alec Scott <alec@bcs.sh>
2023-11-10 09:48:50 -08:00
Massimiliano Culpo
f6039d1d45 builtin.repo: fix ^mkl pattern in minor packages (#41003)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-11-10 17:18:24 +01:00
Victoria Cherkas
8871bd5ba5 fdb: add dependency on eckit later release (#40737)
* depends_on("eckit@1.24.4:", when="@5.11.22:")

* Update var/spack/repos/builtin/packages/fdb/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

* make latest tagged release the default install

* revert f258f46660

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
2023-11-10 07:54:25 -08:00
Cody Balos
efe85755d8 alquimia: apply patch for iso_c_binding to latest version (#40989) 2023-11-10 08:31:38 -06:00
Cody Balos
7aaa17856d pflotran: tweak for building with xsdk rocm/hip (#40990) 2023-11-10 08:30:35 -06:00
Massimiliano Culpo
fbf02b561a gromacs et al: fix ^mkl pattern (#41002)
The ^mkl pattern was used to refer to three packages
even though none of software using it was depending
on "mkl".

This pattern, which follows Hyrum's law, is now being
removed in favor of a more explicit one.

In this PR gromacs, abinit, lammps, and quantum-espresso
are modified.

Intel packages are also modified to provide "lapack"
and "blas" together.
2023-11-10 13:56:04 +00:00
Harmen Stoppels
4027a2139b env: compute env mods only for installed roots (#40997)
And improve the error message (load vs unload).

Of course you could have some uninstalled dependency too, but as long as
it doesn't implement `setup_run_environment` etc, I don't think it hurts
to attempt to load the root anyways, given that failure to do so is a
warning, not a fatal error.
2023-11-10 12:32:48 +01:00
Todd Gamblin
f0ced1af42 info: rework spack info command to display variants better (#40998)
This changes variant display to use a much more legible format, and to use screen space
much better (particularly on narrow terminals). It also adds color the variant display
to match other parts of `spack info`.

Descriptions and variant value lists that were frequently squished into a tiny column
before now have closer to the full terminal width.

This change also preserves any whitespace formatting present in `package.py`, so package
maintainers can make easer-to-read descriptions of variant values if they want. For
example, `gasnet` has had a nice description of the `conduits` variant for a while, but
it was wrapped and made illegible by `spack info`. That is now fixed and the original
newlines are kept.

Conditional variants are grouped by their when clauses by default, but if you do not
like the grouping, you can display all the variants in order with `--variants-by-name`.
I'm not sure when people will prefer this, but it makes it easier to tell that a
particular variant is/isn't there. I do think grouping by `when` is the better default.
2023-11-10 12:31:28 +01:00
David Boehme
2e45edf4e3 Add adiak v0.4.0 (#40993)
* Add adiak v0.4.0
* Fix style checks
2023-11-09 21:23:00 -07:00
Adam J. Stewart
4bcfb01566 py-black: add v23.10: (#40959) 2023-11-10 00:10:28 +01:00
Adam J. Stewart
b8bb8a70ce PyTorch: specify CUDA root directory (#40855) 2023-11-09 14:25:54 -08:00
Hariharan Devarajan
dd2b436b5a new release cpp-logger v0.0.2 (#40972) 2023-11-09 13:08:04 -08:00
Hariharan Devarajan
da2cc2351c Release Gotcha v1.0.5 (#40973) 2023-11-09 13:06:56 -08:00
eugeneswalker
383ec19a0c Revert "Deactivate Cray sles, due to unavailable runner (#40291)" (#40910)
This reverts commit 4b06862a7f.
2023-11-09 12:24:18 -08:00
Todd Gamblin
45f8a0e42c docs: tweak formatting of +: and -: operators (#40988)
Just trying to make these stand out a bit more in the docs.
2023-11-09 19:55:29 +00:00
Dom Heinzeller
4636a7f14f Add symlinks for hdf5 library names when built in debug mode (#40965)
* Add symlinks for hdf5 library names when built in debug mode
* Only apply bug fix for debug libs when build type is Debug
2023-11-09 11:40:53 -08:00
Kelly (KT) Thompson
38f3f57a54 [lcov] Add build and runtime deps necessary for lcov@2.0.0: (#40974)
* [lcov] Add build and runtime deps necessary for lcov@2.0.0:
   + Many additional Perl package dependecies are required for the new version of lcov.
   + Some of the new dependencies were not known to spack until now.
* Style fix
2023-11-09 11:37:38 -08:00
Satish Balay
b17d7cd0e6 mfem: add hipblas dependency for superlu-dist (#40981) 2023-11-09 11:19:48 -08:00