Commit Graph

95 Commits

Author SHA1 Message Date
Daniel Topa
11d94f4c4f Open MPI: add v2.1.5 (#9021)
Final fix for v2.1 (hopefully)
Test build on LANL CCSCS4, Desktop

Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-18 22:44:14 -05:00
Daniel Topa
31380204c9 Openmpi add v2.1.4 (#9006)
* Add latest release 3.0.2
https://www.open-mpi.org/software/ompi/v3.0/:x

Signed-off-by: Daniel Topa <dantopa@lanl.gov>

* 1. Added correct md5 sum for Open MPI v3.1.1 (https://www.open-mpi.org//software/ompi/v3.1/)
2. Made v3.1.1 the default version
3. Added libmpiso versions for v3.1.1 and 3.0.2

Signed-off-by: Daniel Topa <dantopa@lanl.gov>

* Added Open MPI v2.14 to version list; Tested build; Added libmpi.so version

Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-18 20:34:05 -05:00
Tom Merrick
51aa604ed2 Fix openmpi to work with slurm/pmi and mxm (#8427)
* Add binutils+libiberty for mxm fabric
* Help find the pmi library when using the slurm scheduler
2018-08-02 14:06:39 -04:00
Jon Rood
15d96f0166 Add extra_rpaths to OpenMPI wrappers (#8687)
If the OpenMPI build finds the infiniband drivers in /usr/lib64, it adds
-Wl,-rpath -Wl,/usr/lib64 to the OpenMPI wrappers. If the wrappers are using
a compiler outside of /usr, and the OpenMPI wrappers are used to build software
outside of Spack, they will rpath /usr/lib64 into the executable which then has
GLIBC, GLIBCXX runtime errors due to it picking up GCC libraries in /usr/lib64.

This adds the directories specified in "extra_rpaths" to the OpenMPI wrappers,
which allows them to use the correct compiler when invoked outside of Spack
builds.
2018-07-30 15:02:09 -04:00
Cyrus Harrison
290125f893 openmpi: add c++ exceptions cfg option variant (#8743)
* openmpi: add c++ exceptions cfg option variant

* address review comments
2018-07-18 14:54:12 -05:00
Howard Pritchard
be9dfc2d73 openmpi: add 3.1.1 (#8684)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-07-11 12:42:00 -05:00
Daniel Topa
70a0ea910f openmpi: add latest release 3.0.2 (#8452)
* Add latest release 3.0.2
https://www.open-mpi.org/software/ompi/v3.0/:x

Signed-off-by: Daniel Topa <dantopa@lanl.gov>

* Add in library version in comment
2018-06-21 12:55:17 -05:00
Levi Baber
0ac777b88e openmpi: new version (#8055) 2018-05-08 12:35:44 -05:00
Massimiliano Culpo
0570b075d4
openmpi: don't build static libraries if slurm is activated (#8021)
According to this comment:

    https://github.com/open-mpi/ompi/issues/4338#issuecomment-383982008

on an OpenMPI issue, using `--enable-static` silently disable slurm
support.
2018-05-04 16:27:54 +02:00
Levi Baber
a4e786a415 openmpi: libfabric support, ucx cleanup (#7842)
* openmpi: libfabric support, ucx cleanup

* openmpi: remove unnecessary parentheses
2018-04-25 10:37:48 -05:00
Daniel Topa
82ac1571c2 Openmpi update multithread (#7893)
--enable-mpi-thread-multiple option not viable in Open MPI 3.0+

Signed-off-by: Dan Topa <dantopa@lanl.gov>
2018-04-25 07:01:17 +02:00
Howard Pritchard
32c8237256 Open MPI: add 3.0.1 (#7661)
Open MPI 3.0.1 bug fix release is out the door!

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-04-02 19:22:59 -05:00
Massimiliano Culpo
8e998247a3
openmpi: updated package (#7574)
Modifications:
* Added zlib dependency, starting from version 3.0.0
* Added memchecker support  for debugging
* Remove mpirun and similar links if slurm is selected as a scheduler
2018-03-28 10:13:56 +02:00
健美猫
658896a7a5 Remove pmi from the fabric list. (#7226) 2018-03-26 13:14:51 +02:00
Todd Gamblin
54f97d1dec
Update copyright on LLNL files for 2018. (#7592) 2018-03-24 12:13:52 -07:00
Howard Pritchard
f59a447f71 Open MPI: add 2.1.3 (#7535)
note the libmpi.so itself didn't have changes, only other
components of the package had updates.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-03-21 16:49:31 -05:00
Massimiliano Culpo
cf4b3f2af6
hwloc: updated package (#7483)
This includes:

* Added latest available versions (1.11.9, 2.0.0)
* Added variants to enable graphical output from lstopo
* Enabled build of the bundled netloc package if @2.0.0:
* Added dependency from numactl if @:1.11.9
* Added a constraint to avoid using  hwloc@2.0.0 with openmpi
2018-03-15 10:16:33 +01:00
Veselin Dobrev
e4597f09be openmpi: add package-specific 'headers' property (#7267)
* [OpenMPI] Add the 'headers' property. This removes some redundant
headers from sub-directories, returned by the default '.headers'
handler.

* [OpenMPI] In the .headers property, add a fallback to search all of
prefix for the mpi.h header. Recommended by @junghans to support some
external configurations, see #7268.
2018-03-05 12:53:36 -07:00
alalazo
e72b69732e Changed keyword argument 'recurse' to 'recursive' 2018-02-13 02:18:28 -08:00
alalazo
efd2a95781 find has been changed to accept glob expressions
Following the discussion with Todd and Adam, find has been modified to
accept glob expressions. This should not affect performance as every
glob implementation I inspected has 3 cases (no wildcard, wildcard but
no directories involved, wildcard and directories involved) and uses
fnmatch underneath.

Mixins have been changed to do by default a non-recursive search (but
a recursive search can still be triggered using the recursive keyword).
2018-02-13 02:18:28 -08:00
alalazo
c62b3eef55 filter_compiler_path: added the possibility to narrow search path
Following a comment from Todd, the search path for the files listed in
`filter_compiler_wrappers` can now be narrowed. Anyhow, the function
implementation still makes use of `find`, the rationale being that we
have already seen packages that install artifacts in e.g. architecture
dependent folders. The possibility to have a relative search path might
be a good compromise between the previous approach and the one suggested
in the review.

Also: 'ignore_absent' and 'backup' keyword arguments can be optionally
forwarded to `filter_file`.
2018-02-13 02:18:28 -08:00
alalazo
22def01adf mixins: implemented declarative syntax
Implemented a declarative syntax for the additional behavior that can
get attached to classes. Implemented a function to filter compiler
wrappers that uses the mechanism above.
2018-02-13 02:18:28 -08:00
alalazo
8e0f9038ab Improved naming of properties and classes (per Denis comments). 2018-02-13 02:18:28 -08:00
alalazo
28e129b087 Added mixins to modularize common behaviors across build-systems.
Modifications:
  * added a mixin to filter compiler wrappers from files
  * modified hdf5, openmpi, mpich, mvapich2 to use it
2018-02-13 02:18:28 -08:00
Howard Pritchard
af1b93b3db Open MPI: add 2.0.4 release to package file (#6310)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-11-15 13:03:07 -07:00
Christoph Junghans
02335fa849
ucx: initial commit (#6265) 2017-11-13 10:47:58 -07:00
Todd Gamblin
05fa302655
Replace github.com/llnl/spack with github.com/spack/spack (#6142)
We moved to a new GitHub org! Now make the code and docs reflect that.
2017-11-04 17:08:04 -07:00
Howard Pritchard
699f34c33f OpenMPI: add 2.1.2 bug fix release (#5418) 2017-09-21 13:26:23 -07:00
Howard Pritchard
707b773aa2 Open MPI: add Open MPI 3.0.0 (#5360)
Open MPI 3.0.0 is released!  Add to spack.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-09-16 13:14:24 -07:00
Michael Kuhn
84ae7872d3 Update copyright notices for 2017 (#5295) 2017-09-06 17:44:16 -10:00
snehring
db74f4c3a1 Add a new package for IcedTea (#4804)
* alsa-lib: new package

* cups: new package

* icedtea: new package

* icedtea: adding JAVA_HOME variable

* alsa: removing placeholder

* icedtea: typo fix

* alsa: fixing formattting

* icedtea: formatting fixes and cleanup

* icedtea: additional cleanup

* jdk: adding provides('java') to jdk, setting jdk to default java.

* icedtea: adding jdk as a dependency

* java: changing depends_on('jdk') and similar entries to depends_on('java')

* icedtea: removing unused imports, trying to placate flake8.

* fastqc: fixing flake8 error

* bazel: fixing typo in java dependency

* jdk: changing provides java to a range

* icedtea: cleaning up. Splitting up checksums.

* icedtea: jdk dependency is build only
2017-08-05 14:53:09 -05:00
Jon Rood
904f6f0572 Adding a bit more Mellanox MXM capability to OpenMPI. (#4762) 2017-07-18 13:45:43 -05:00
Adam J. Stewart
9933d759ac Update hdfgroup packages to new URL structure (#4643)
* Update hdfgroup packages to new URL structure

* Update docs now that HDF5 URL isn't that complicated
2017-06-29 21:38:47 -05:00
Todd Gamblin
cac4362f64 Make LICENSE recognizable by GitHub. (#4598) 2017-06-24 22:22:55 -07:00
Adam J. Stewart
cf2178f416 Overhaul CONVERGE installation and concretization (#4397) 2017-06-19 10:18:48 -05:00
Adam J. Stewart
60db73a3f5 Fix OpenMPI CUDA support (#4323)
* Fix OpenMPI CUDA support

* Remove --with-cuda-libdir flag, not a real flag

* Fix PGI and CUDA 7 support
2017-06-16 10:00:19 -05:00
Howard Pritchard
4e92811939 Open MPI: add 2.0.3 (#4450)
Add Open MPI bug fix release 2.0.3

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-06-07 14:42:49 -05:00
Adam J. Stewart
336d988cc6 Add every version of OpenMPI (#4372) 2017-05-30 10:16:43 -05:00
Howard Pritchard
64dfc8bda6 Open MPI: add 2.1.1 to the list (#4204)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-05-10 16:08:52 -05:00
George Hartzell
ba32f0d3a2 Make openmpi package defn more robust (#4183)
Make openmpi handle bad ibv_devices return statuses without bailing out completely.

See #4162 for background.
2017-05-09 18:00:08 -05:00
Massimiliano Culpo
9e4b0eb34a Multi-valued variants (#2386)
Modifications:
- added support for multi-valued variants
- refactored code related to variants into variant.py
- added new generic features to AutotoolsPackage that leverage multi-valued variants
- modified openmpi to use new features
- added unit tests for the new semantics
2017-05-01 13:08:47 -07:00
Jimmy Tang
00fb0dd6c6 Openmpi cuda support (#3725)
* Update cuda to latest ga2 release

* Add CUDA support to openmpi

* Use spec's lib directories for cuda

* flake8 compliance
2017-04-06 16:12:54 +02:00
Todd Gamblin
221f179716 Add better tests for web.py; fix some bugs found with spidering.
- _spider in web.py was actually failing to spider deeper than a certain
  point.
- Fixed multiprocessing pools to not use daemons and to allow recursive
  spawning.
- Added detailed tests for spidering and for finding archive versions.
- left some xfail URL finding exercises for the reader.
- Fix noqa annotations for some @when decorators
2017-04-01 15:10:45 -07:00
Howard Pritchard
7c82db07ac Open MPI: add new packages (#3519)
there were various updated packages, both for the 2.x, 2.0.x,
and 1.10.x release branches of Open MPI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
(cherry picked from commit 3b671935783fc3af76dc642a54461c2f02ab8ebf)
2017-03-22 16:16:32 -05:00
Adam J. Stewart
dca4d2b15e Consistent docs and usage of env mod methods (#3351) 2017-03-14 22:26:44 -07:00
Massimiliano Culpo
ed582cef68 New interface for passing build information among specs (#1875)
- Added a new interface for Specs to pass build information
  - Calls forwarded from Spec to Package are now explicit
  - Added descriptor within Spec to manage forwarding
  - Added state in Spec to maintain query information
  - Modified a few packages (the one involved in spack install pexsi) to showcase changes

- This uses an object wrapper to `spec` to implement the `libs` sub-calls.
  - wrapper is returned from `__getitem__` only if spec is concrete
  - allows packagers to access build information easily
2017-03-02 10:01:29 -08:00
Howard Pritchard
0cdbd74b82 openmpi (#2988)
We just released 2.0.2 yesterday, so add in that release for
spack.  Don't need the PMI patch for this release.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-02-03 14:10:44 -08:00
健美猫
a08ccbedee Patch OpenMPI 2.0.x to fix pmi_opcaddy_t_class issue. (#2962) 2017-01-31 14:52:38 -05:00
Massimiliano Culpo
fc866ae0fe build systems: simpler, clearer decorators: run_after, run_before (#2860)
* PackageMeta: `run_before` is an alias of `precondition`, `run_after` an alias of `sanity_check`

* PackageMeta: removed `precondition` and `sanity_check`

* PackageMeta: decorators are now free-standing

* package: modified/added docstrings. Fixed the semantics of `on_package_attributes`.

* package: added unit test assertion as side effects of install

* build_systems: factored build-time test running into base class

* r: updated decorators in package.py

* docs: updated decorator names
2017-01-25 08:57:01 -07:00
Erik Schnetter
9b7001fda1 OpenMPI: Update auto-detection of Verbs library location (#2124) 2017-01-18 14:54:39 -08:00