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Author SHA1 Message Date
iarspider
47b16b39a3 Add new version of Alpaka, set minimal CMake version (#25835) 2021-09-08 13:55:38 +02:00
Harmen Stoppels
7018a42211 Make sure we only pull in openssl w/ +ownlibs (#25559) 2021-09-08 05:16:50 -06:00
iarspider
28f71c4d12 Update catch2 (#25838) 2021-09-08 04:49:50 -06:00
Harmen Stoppels
26455a4ac2 mbedtls: trun into a MakefilePackage (#25558) 
This is a step towards building cmake with curl using mbedtls instead of
openssl; building mbedtls shouldn't require cmake then.
 2021-09-08 12:39:25 +02:00
bernhardkaindl
4e4b199f16 lib/spack/env/cc: tolerate trailing / in elements of $PATH (#25733) 
Fixes removal of SPACK_ENV_PATH from PATH in the presence of trailing
slashes in the elements of PATH:

The compiler wrapper has to ensure that it is not called nested like
it would happen when gcc's collect2 uses PATH to call the linker ld,
or else the compilation fails.

To prevent nested calls, the compiler wrapper removes the elements
of SPACK_ENV_PATH from PATH.

Sadly, the autotest framework appends a slash to each element
of PATH when adding AUTOTEST_PATH to the PATH for the tests,
and some tests like those of GNU bison run cc inside the test.

Thus, ensure that PATH cleanup works even with trailing slashes.

This fixes the autotest suite of bison, compiling hundreds of
bison-generated test cases in a autotest-generated testsuite.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2021-09-08 12:09:07 +02:00
Sebastian Ehlert
0fb5a39c17 Add new versions of nlopt (#25836) 2021-09-08 12:06:45 +02:00
QuellynSnead
a86279cc52 netlib-lapack: Fixes for IBM XL builds (#25793) 
netlib-lapack: Version 3.9.0 and above no longer builds with the IBM XL
compiler (#25447). Ported some fixes from the old ibm-xl.patch and added
logic for detection of XL's -qrecur flag.
 2021-09-08 04:09:12 -04:00
bernhardkaindl
fd111a3395 autoconf package: Fix 2.69 and 2.62 to pass the testsuite (#25701) 
Apply stable-release fixes from 2017 to older autoconf releses:
- Fix the scripts autoheader and autoscan to pass the test suite
- Fix test case to passing when libtool 2.4.3+ is in use

autoconf-2.13 dates back to 1999. The build wasn't possible since
4 years: Since 2017, we patch autom4te which didn't exist in 2.13,
failing the build of it. 4 years of not being able to build 2.13
is a crystal clear indication that we can remove it safely.
 2021-09-07 18:25:44 -07:00
Cody Balos
32b6da8d57 amrex: support sundials variant in newer amrex versions (#25745) 
* amrex: support sundials variant in newer amrex versions

* propagate cuda_arch to sundials

* change to old string formatting

* require sundials+rocm when amrex+rocm
 2021-09-07 18:05:32 -07:00
Adam J. Stewart
c6e538583f GDAL package: add version 3.3.2 (#25820) 2021-09-07 13:55:51 -07:00
Stephen McDowell
83298160cc docs: minor grammar fix (#25814) 2021-09-07 09:51:14 +00:00
Adam J. Stewart
54fbe555cd gdbm: fix build issue on macOS (#25811) 2021-09-07 08:51:19 +01:00
Tao Lin
c4e85faa2d garfieldpp: add new package (#25800) 
Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
 2021-09-07 08:16:15 +02:00
Ignacio Laguna
a59edb2826 fpchecker: add new package (#25550) 2021-09-07 08:14:25 +02:00
Timothy Brown
2e2fbc6408 mpas-model: add v 7.1 (#25809) 2021-09-07 08:08:04 +02:00
Adam J. Stewart
5abbd094c7 py-einops: add new package (#25812) 2021-09-07 07:40:18 +02:00
bernhardkaindl
ca58cb701c gtk-doc: Fix the testsuite (hangs if gtkdocize was not installed) (#25717) 
Ensure that testsuite has py-anytree and py-parameterized
and finds gtk-doc's gitdocize.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-09-06 20:10:14 -05:00
Scott Wittenburg
a358358aa7 Update pinned OpenSSL version to 1.1.1l (#25787) 
Update to the latest version of openssl, as the previous one (1.1.1k) is
now deprecated, so spack can no longer rebuild it from source.
 2021-09-06 16:46:41 +00:00
bernhardkaindl
84d525dbdf perl: fix regressions in the end-of-life revisions (#25801) 
- perl@:5.24.1 needs zlib@:1.2.8 - shown by more than a dozen tests
  https://rt.cpan.org/Public/Bug/Display.html?id=120134

- perl@:5.26.2 needs gdbm@:1.14.1 - shown by the test suite
  https://rt-archive.perl.org/perl5/Ticket/Display.html?id=133295

- Fix the test case cpan/Time-Local/t/Local.t to use 4-digit years
  http://blogs.perl.org/users/tom_wyant/2020/01/my-y2020-bug.html
 2021-09-06 09:07:54 -06:00
bernhardkaindl
b5fa64fb10 libunistring: apply upstream fix for test suite (#25691) 
Simple case of pragma weak not working with --as-needed
https://bugs.gentoo.org/688464
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925746

Added possiblity to build from git master(new version master)
 2021-09-06 08:55:38 -06:00
Olivier Cessenat
c424b86a64 gxsview: new package, an MCNP viewer (#25637) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2021-09-06 16:17:22 +02:00
Billae
ca50c91469 mesa: add v21.2.1 (#25715) 2021-09-06 16:02:11 +02:00
bernhardkaindl
13c0b0dcb3 uftrace: add new package (#25710) 2021-09-06 15:57:11 +02:00
Harmen Stoppels
834155fdb8 ccache 4.4 errors for old gcc/clang (#25783) 2021-09-06 15:33:08 +02:00
Axel Huebl
1badb47b80 WarpX/HiPACE/openPMD-api: Use when(...) (#25789) 
Use the new with `when()` syntax for variant dependencies.
 2021-09-06 15:26:04 +02:00
QuellynSnead
1a48c0f51c elfutils: address external linkage failures in 0.185 (#25769) 2021-09-06 15:07:42 +02:00
lukebroskop
92e4db4681 Do not allow cray build system patch for later version of otf2 (#25283) 
Co-authored-by: Luke Roskop <lroskop@cedar.head.cm.us.cray.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2021-09-06 14:38:51 +02:00
Terry Cojean
dd8dc08a90 Ginkgo: add v1.4.0 (#25606) 
* Add a patch to skip unavailable smoke tests.
 2021-09-06 14:11:35 +02:00
Jean-Paul Pelteret
3e4b576f83 deal.II: Bump minimum required version for Ginkgo package (#25795) 2021-09-06 14:07:11 +02:00
Michael Kuhn
526315410a gzip: add v1.11 (#25797) 2021-09-06 14:00:25 +02:00
Michael Kuhn
66526cb57a gdbm: add v1.21 (#25798) 2021-09-06 13:13:18 +02:00
Sebastian Ehlert
beff29176c fpm: new package (#25799) 2021-09-06 13:12:53 +02:00
Jordan Galby
2af6c57afa py-pyqt5: don't install files into qt5 install prefix (#25657) 
By default, py-pyqt5 installs qt designer and qml plugins into qt5's
install `<prefix>/plugins`. Don't do that.
 2021-09-06 12:18:13 +02:00
Peter Scheibel
accd6dd228 boost @1.76: set toolset for intel b2 invocation (#25722) 
and simplify constraint and add explanatory comment
 2021-09-05 13:34:10 +02:00
bernhardkaindl
0ad54e0679 New package: py-anytree (#25718) 
It is required for running all tests of gtk-doc.
 2021-09-03 14:14:38 -07:00
Asher Mancinelli
bbc9d7d965 HiOp package: update magma dependency (#25721) 2021-09-03 14:05:45 -07:00
bernhardkaindl
6f5ec73087 m4: fix glitch in the test suite (#25702) 2021-09-03 15:04:59 -06:00
Desmond Orton
0aedafda19 New package: getOrganelle@1.7.5.0 (#25725) 2021-09-03 14:04:24 -07:00
Jose E. Roman
ac3ccad1e2 SLEPc package: add gpu variants (#25760) 2021-09-03 14:01:42 -07:00
Cyrus Harrison
5180b0b454 apcomp package: add versions 0.0.3 and 0.0.2 (#25767) 2021-09-03 14:00:17 -07:00
pmargara
432f577a0c RELION package: add versions 3.1.3 and 3.1.2 (#25772) 2021-09-03 13:58:39 -07:00
Paul Spencer
f6060c9894 Mathematica package: add version 12.2.0 (#25791) 2021-09-03 13:41:39 -07:00
Harmen Stoppels
c6c9213766 rocblas: use AMDGPU_TARGETS instead of Tensile_ARCHITECTURE (#25778) 2021-09-03 18:19:57 +02:00
Harmen Stoppels
64407e253c Always disable leftover active environment after tests 2021-09-03 07:27:19 -07:00
Harmen Stoppels
de492e73d5 Don't error when removing scope that does not exist 2021-09-03 07:27:19 -07:00
Sreenivasa Murthy Kolam
29d344e4c7 update version for rocm-4.3.1 release (#25766) 2021-09-03 15:25:31 +02:00
bernhardkaindl
95586335f7 openssh: add v8.7 (#25774) 2021-09-03 06:22:40 -06:00
Weiqun Zhang
f56f4677cf amrex: 21.09 (#25739) 2021-09-03 03:34:56 -06:00
Desmond Orton
043f0cd014 py-ansi2html: new package (#25741) 2021-09-03 11:25:52 +02:00
Desmond Orton
9841d1f571 py-cryolobm: add new package (#25748) 2021-09-03 11:25:06 +02:00