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5848 Commits

Author SHA1 Message Date
Matthias Diener
9fa169baa6 strace: create new package (#7640) 2018-03-29 17:03:33 -05:00
Adam J. Stewart
499ed2385c Fix Python3 bug in tut (#7627) 
* Fix Python3 bug in tut

* Revert URL change
 2018-03-29 14:43:12 -05:00
Yifan Zhu
90c0c12f2a gurobi: new package (#7639) 
* gurobi: new pacakge

* fixed flake8 errors
 2018-03-29 14:42:36 -05:00
Will Furnass
e4b5097375 Add Julia 0.6.2 + checksum (#7577) 2018-03-29 11:44:25 +02:00
Matthias Diener
1dc7b3d346 cmake: update package (#7633) 2018-03-29 11:36:55 +02:00
Howard Pritchard
cdd3f76bd1 libhio: add libhio package to spack (#7468) 
spack brought out some configury/make issues with
libhio, so some patches come along for the ride.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2018-03-28 20:20:46 -05:00
Michael F. Herbst
fa7e92fa0a Update libcint versions (#7623) 2018-03-28 10:46:07 -05:00
Levi Baber
a6aa172072 gmap-gsnap: new version with numerous bug fixes (#7625) 2018-03-28 10:45:47 -05:00
Levi Baber
16f93464e7 R-snowfall: new package (#7464) 
* r-snowfall: dep for phantompeakqualtools

* r-snowfall: fix version number

* r-snowfall: fix hash
 2018-03-28 10:30:38 -05:00
Adam J. Stewart
4230c95093 Fix download URL for SCons and add latest version (#7614) 2018-03-28 10:29:44 -05:00
Michael F. Herbst
843e9f13a1 Add recent bohrium version (#7624) 2018-03-28 10:21:36 -05:00
Eric Müller
70a8219f92 Adds liblockfile (and patch to avoid need for root) (#7621) 
* --enable-shared *additionally* builds shared libraries
  (and it builds fast, so no variant here)
 2018-03-28 07:54:40 -05:00
Massimiliano Culpo
8e998247a3 openmpi: updated package (#7574) 
Modifications:
* Added zlib dependency, starting from version 3.0.0
* Added memchecker support  for debugging
* Remove mpirun and similar links if slurm is selected as a scheduler
 2018-03-28 10:13:56 +02:00
Denis Davydov
388bb2ab3e petsc: add 3.8.4 (#7616) 2018-03-27 17:41:17 -05:00
David Orman
b5c02a2145 added htslib 1.7 and checksum (#7617) 2018-03-27 17:40:57 -05:00
Nils Deppe
bac47ece70 Add Catch v2.2.1 and v1.12.1 (#7615) 
Catch v1 and v2 are maintained independently since v2 requires C++11
support. Updating both to the latest.
 2018-03-27 17:40:26 -05:00
Veselin Dobrev
b1628f0af1 [MUMPS] When building '+shared' put the 'inject_libs' after the object 
files to get proper linking - this was needed on Ubuntu 14.04.
 2018-03-27 14:31:00 -07:00
Leonhard Reichenbach
0d07be278a spades: fix build (#7608) 
Version 3.11 works with gcc7
see: https://github.com/ablab/spades/issues/26
 2018-03-27 07:22:34 -05:00
Yifan Zhu
d88f0b8e6d New package r-tidyverse and r-tidyselect (#6507) 
* r-rlang: added version 0.1.4

* r-lubridate: added version 1.7.1 and dependency

* r-tidyselect: new package

* r-dplyr: added version 0.7.4

* r-rstudioapi: added version 0.7

* r-tidyr: added version 0.7.2 and other dependencies

* r-tidyverse: new package

* r-tidyr: updated dependencies

* r-tidyverse: added dependency r-rlang

* r-tidyverse: edited docstring

* r-tidyverse: fixed typo

* fix typo again
 2018-03-26 14:27:12 -05:00
Eric Müller
28e49fa184 Add missing X-libs dependencies to vim+x (#7599) 2018-03-26 10:24:50 -05:00
Michael Kuhn
2a36c61d0f adios2: add support for Fortran bindings (#7600) 2018-03-26 16:16:38 +02:00
健美猫
658896a7a5 Remove pmi from the fabric list. (#7226) 2018-03-26 13:14:51 +02:00
Michael Kuhn
aeb73f958f zeromq: fix build (#7596) 
pkg-config is also required for release versions.
 2018-03-26 12:22:07 +02:00
Michael Kuhn
1aed76002a openssl: Add variant to use system certificates (#6396) 2018-03-26 12:20:55 +02:00
Massimiliano Culpo
a119a2d2d8 mpich: added version 3.2.1 (#7598) 2018-03-26 12:19:37 +02:00
Sinan
9f7dbd7f2d new package: Seqan (bioinformatics) (#7588) 
* new package: Seqan (bioinformatics)

* add compiler requirements as conflicts

* fix typo

* add dependency types

* correct checksum
 2018-03-25 08:50:17 -05:00
Massimiliano Culpo
dffd8f384c python: added a variant to enable PGO + using --with-icc if compiled with Intel (#7496) 
Added a variant to enable default optimizations for production builds.
Uses --with-icc if built with Intel compilers.
 2018-03-25 09:10:40 +02:00
健美猫
8890dbe3d9 Add a new packag: sofa-c. (#7470) 2018-03-24 20:51:02 +01:00
Todd Gamblin
54f97d1dec Update copyright on LLNL files for 2018. (#7592) 2018-03-24 12:13:52 -07:00
健美猫
756cb4e6d7 Add a new package: graph500. (#7499) 
* Add a new package: graph500.

* Remove leading comments.

* graph500 is a MakefilePackage.

* Update.

* Update.
 2018-03-24 11:48:31 -05:00
Adam J. Stewart
5b810579fa Only add python flag for newer versions of glib (#7579) 2018-03-23 15:35:09 -05:00
Jon Rood
04358f827f Adding bc and ed packages. (#7578) 
* Adding bc package.

* Adding ed package which is actually a dependency of bc.
 2018-03-23 15:24:35 -05:00
xfzhao
9799e6062d beast1: new package (#7544) 
* beast1: new package

* beast1: taking suggestion
 2018-03-23 15:19:26 -05:00
healther
1391f0db44 add matplotlib version 2.2.2 (#7572) 2018-03-23 14:40:18 +01:00
Denis Davydov
adf972e7ff intel performance libraries: add 2018.2 (#7569) 2018-03-23 13:49:59 +01:00
Federico Ficarelli
213a3de539 Fix tclsh command for transitive dependencies (#7566) 2018-03-23 10:05:54 +01:00
Alfredo Adolfo Gimenez
a37acfc1e9 Dyninst links broken, everything switched to github (#6066) 2018-03-22 20:29:17 -05:00
Matthias Diener
a0494003a2 mc: create new package (#7564) 
* mc: new package

* Update package.py

* Update package.py

* Update package.py
 2018-03-22 19:48:48 -05:00
Veselin Dobrev
3858d4a3a3 [hypre] add the 'headers' property (#7278) 
* [hypre] Add the 'headers' property plus a small tweak in the 'libs'
property.

* [hypre] Add fallbacks for searching for '.libs' in 'prefix.lib64' and
in all of 'prefix'.

* [hypre] Fix style.

* [hypre] Use find_headers instead of find + HeaderList.
 2018-03-22 19:43:23 -05:00
jthies
2e4378bcd0 added a new package file for PHIST (Pipelined, Hybrid-parallel Iterat… (#7361) 
* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit)

* packages/phist: fix some formatting errors (too long lines etc)
and set allowed values for option "outlev"

* packages/phist: fix some more flake8 errors

* add headers  property to netlib-lapack and intel-mkl

* ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())

* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit)

* packages/phist: fix some formatting errors (too long lines etc)
and set allowed values for option "outlev"

* packages/phist: fix some more flake8 errors

* phist: use headers property to find lapacke include dir

* phist: fix flake8 error

* phist: be more specific about dependencies and update version

* phist: state trilinos minimum version when building with Tpetra kernels

* gmp: add oldish version 5.1.3 with checksum

* phist: get rid of the 'petsc+complex' variant, it can be installed by kernel_lib=petsc ^petsc+complex

* phist: new version

* phist: fix version checksum

* Revert "add headers  property to netlib-lapack and intel-mkl"

This reverts commit d8cb62905e.

* Revert "ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())"

This reverts commit d406a77ed7.

* phist: remove unused function

* phist: reorder package file versions/variants/depends_on/rest

* phist: some minor changes requested by @adamjsteward
 2018-03-22 19:42:38 -05:00
Eric
9a3a9860df perl-json: Create new package (#7431) 2018-03-22 19:41:50 -05:00
Adam J. Stewart
666341599c Add py-cvxopt package (#7527) 
* Add py-cvxopt package

* Flake8 fixes
 2018-03-22 19:38:46 -05:00
Adam J. Stewart
1f23693877 Fix giflib unit tests on macOS/BSD (#7519) 
* Fix giflib unit tests on macOS/BSD

* Unit tests occasionally fail when run in parallel
 2018-03-22 19:38:17 -05:00
Adam J. Stewart
32a78eae73 Add latest version of MPFR and patches for older versions (#7545) 
* Add latest version of MPFR and patches for older versions

* Fetch and checksum patches instead of storing them

* Fix bug, version attribute was being overridden
 2018-03-22 19:37:01 -05:00
Sinan
8d4ef999d7 package/py-pyutilib: create new package (#7555) 2018-03-22 21:49:07 +01:00
Gregory Lee
be3f08d0de llvm+python+lldb depends on py-six for versions 5 and up (#7056) 2018-03-22 15:42:41 -05:00
Massimiliano Culpo
0d7652c508 Used names with __ in class level constructs to avoid rebinding (#7563) 
fixes #3129
 2018-03-22 15:41:55 -05:00
Adam J. Stewart
06e1fdb237 Add latest version of MPC (#7546) 2018-03-22 21:10:58 +01:00
Adam J. Stewart
9c0fb6ccee Add latest version of ISL (#7547) 2018-03-22 21:09:43 +01:00
Sinan
5e7fc91d8a add versions 1.9.6 1.9.7 (#7562) 2018-03-22 21:07:34 +01:00