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154504da7177616abc7d23f2b54eac035e286a4a
Commit Graph

11273 Commits

Author SHA1 Message Date
Michael Kuhn
154504da71 binutils: fix build with gcc@10: (#16661) 
The issue seems to be fixed in the development version already.
 2020-05-15 13:13:04 +02:00
Scott Wittenburg
e0572a7d96 Pipelines: Support DAG scheduling and dynamic child pipelines 
This change also adds a code path through the spack ci pipelines
infrastructure which supports PR testing on the Spack repository.
Gitlab pipelines run as a result of a PR (either creation or pushing
to a PR branch) will only verify that the packages in the environment
build without error.  When the PR branch is merged to develop,
another pipeline will run which results in the generated binaries
getting pushed to the binary mirror.
 2020-05-14 21:11:07 -07:00
Toyohisa Kameyama
ea818caca3 namd: build on aarch64. (#16639) 2020-05-14 20:17:53 -05:00
Robert Blake
b987444871 Fixing the build directory for cardioid. (#16640) 
* Fixing the build directory for cardioid.

* These imports are no longer needed due to deletions.

Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com>
 2020-05-14 20:16:55 -05:00
Michael Kuhn
5875bc6d6b scorep: Fix build with gcc@10: (#16642) 2020-05-14 20:10:58 -05:00
Andrew W Elble
e21b4731a9 lammps: set LAMMPS_POTENTIALS in the runtime environment (#16643) 
so lammps can find the installed potential files
 2020-05-14 20:09:41 -05:00
Jen Herting
b562059d2a New package: maloc (#16631) 
* [maloc] created template

* [maloc] added some build dependencies

* [maloc] added homepage and description

* [maloc] added doc variant in an attempt to disable documentation. Still builds doc though... at least when there is a system doxygen found. Having doxygen being a dependency here can bring python in and cause issues for dependents, even when listed as only a build dependency. Maybe this is a bug?

* [maloc] flake8 and fixme removal

* [maloc] shorted description
 2020-05-14 20:06:21 -05:00
Andrew W Elble
8c025324af ucx: cuda / gdrcopy variants (#16605) 
picking up where #15724 left off.
 2020-05-14 20:04:06 -05:00
健美猞猁
0ed2fa3b9b miniforge3: a new package. (#16644) 2020-05-14 19:50:11 -05:00
Michael Kuhn
c168e1b85e at-spi2-core: Add 2.36.0 (#16645) 
The pkg-config file of newer versions of at-spi2-core includes
dependencies for xtst, recordproto, inputproto and fixesproto, so they
have to be available at runtime as well.
 2020-05-14 19:49:02 -05:00
Michael Kuhn
670a5e8766 atk: Add 2.36.0 (#16646) 2020-05-14 19:48:21 -05:00
Michael Kuhn
232aa9ff2e at-spi2-atk: Add 2.34.2 (#16647) 2020-05-14 19:47:55 -05:00
Amjad Kotobi
0844e56d6d r-hmisc: new version and updated dependency (#16649) 2020-05-14 19:46:02 -05:00
Amjad Kotobi
1eb5a12019 r-survival: new version and updated dependency (#16650) 2020-05-14 19:44:35 -05:00
Michael Kuhn
20b3e41831 adios2: Fix build with gcc@10: (#16570) 2020-05-13 19:46:13 -07:00
Nathan
48a35409e0 Spack Package for ns-3 (#16630) 
* Adding ns3 spack

* Format and cleanup of ns3 spack package

* Removing comments and fixing boost variant

* Fixing formating
 2020-05-13 21:16:17 -05:00
Adam J. Stewart
bc948c4418 py-horovod: add new version (#16635) 2020-05-13 17:52:27 -05:00
Nathan
c50b586e06 Helics: add python variant (#16625) 
* Adding varient for python interface in HELICS

* Append python interface to pythonpath

* cleaning up blank lines

* Update var/spack/repos/builtin/packages/helics/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-05-13 17:25:07 -05:00
Nick Booher
f294c264a1 revbayes: Update checksum (#16628) 2020-05-13 12:54:21 -05:00
Toyohisa Kameyama
66b896d286 conda4aarch64:New Package. (#16617) 2020-05-13 12:49:42 -05:00
Michael Kuhn
a9ee4da670 ncl: Fix build with gcc@10: (#16624) 2020-05-13 12:45:12 -05:00
Amjad Kotobi
9b8082ecf3 r-exactextractr: new package (#16626) 2020-05-13 12:42:16 -05:00
Nichols A. Romero
fa57f1da29 QE Update May 2020 (#16627) 
* Clarify comments about QMCPACK-to-QE converter.

* Allow hdf5=serial with QE 6.4.1 + qmcpack, but apply filter_file.

* Ammend comments about the use of the filter_file.
 2020-05-13 12:41:16 -05:00
lpritch-lanl
043d507540 py-pint: added versions up to v0.11 (#16537) 
Co-authored-by: Lori Pritchett-Sheats <lpritch@pn2002926.lanl.gov>
 2020-05-13 16:47:01 +02:00
Michael Kuhn
308f016f31 parallel-netcdf: fix build with gcc@10: (#16620) 2020-05-13 16:44:50 +02:00
Amjad Kotobi
f6fbf8b8d3 r-xml2: new version & updated dependencies (#16604) 
* r-xml2: new version & updated dependencies

* r-xml2: updated dependencies
 2020-05-13 09:22:53 -05:00
Tomoki, Karatsu
a740c361cd ppopen-appl-fdm: added support to Fujitsu compilers. (#16616) 2020-05-13 15:10:07 +02:00
Toyohisa Kameyama
4777284f08 charmpp: support for aarch64. (#16619) 2020-05-13 15:06:25 +02:00
Michael Kuhn
b4052eb3b8 tcsh: fix build with gcc@10: (#16621) 2020-05-13 14:57:12 +02:00
Michael Kuhn
aaf3388cfe esmf: fix build with gcc@10: (#16622) 2020-05-13 14:53:49 +02:00
Chris White
fdf38ec991 Fix axom install target (#16613) 2020-05-12 16:57:25 -07:00
Pariksheet Nanda
f43b7824ca py-plotly: unfix dependency versions (fixes #16544) (#16546) 
* py-plotly: unfix dependency versions (fixes #16544)

* py-plotly: add missing dependencies for #16546

* py-plotly: match setup.py instead of requirements.txt for #16546
 2020-05-12 17:06:18 -05:00
Justin S
0f2a581276 velvetoptimiser: new package at 2.2.6 (#16611) 2020-05-12 17:05:19 -05:00
Amjad Kotobi
ab92407940 r-testthat : dependencies and version updated (#16576) 
* r-testthat : dependencies and version updated

* Adding version conditions for dependencies

* r-testthat: Fix dependecies condition
 2020-05-12 17:05:01 -05:00
Adam J. Stewart
b4e587bd0b py-scikit-learn: add new version (#16607) 2020-05-12 16:43:56 -05:00
Justin S
1d76067d7a zstd: add 1.4.4 (#16608) 2020-05-12 16:43:43 -05:00
Adam J. Stewart
6b41fb88a9 py-threadpoolctl: add new package (#16606) 2020-05-12 14:33:10 -05:00
Nick Booher
9bdf4564db revbayes: update for 1.1.0 (#16603) 
* revbayes: update for 1.1.0

* revbayes: Fix flake8
 2020-05-12 14:26:44 -05:00
Amjad Kotobi
154c0f5771 new version r-rcurl (#16550) 
* new version r-rcurl

* RCurl dependency R version updated

* Adding version conditions
 2020-05-12 11:42:58 -05:00
Amjad Kotobi
78d8dd0815 new version r-cli (#16553) 
* new version r-cli

* r-cli : dependencies updated

* Adding version conditions for dependencies
 2020-05-12 11:42:20 -05:00
Amjad Kotobi
bfa707dfc4 new version r-ellipsis (#16556) 
* new version r-ellipsis

* r-ellipsis : R dependency updated

* Adding version conditions for dependencies
 2020-05-12 11:41:41 -05:00
Amjad Kotobi
d4c8c8b80d r-rematch2 : new package (#16563) 
* r-rematch2 : new package

* Updating URL
 2020-05-12 11:41:20 -05:00
Amjad Kotobi
b99a5369ce r-roxygen : dependencies and version updated (#16565) 
* r-roxygen : dependencies and version updated

* Dependencies updated for condition
 2020-05-12 11:40:55 -05:00
Amjad Kotobi
7528e1eb45 r-purrr : dependencies and version update (#16566) 
* r-purrr : dependencies and version update

* Dependencies updated for condition
 2020-05-12 11:39:39 -05:00
Amjad Kotobi
173823e77d r-rversions : new package (#16572) 
* r-rversions : new package

* URL updated r-rversions
 2020-05-12 11:39:08 -05:00
Amjad Kotobi
14b80ecaf2 r-withr : dependencies and version updated (#16577) 
* r-withr : dependencies and version updated

* Adding version conditions for dependencies
 2020-05-12 11:36:25 -05:00
Amjad Kotobi
7c327ed447 r-knitr : dependencies and version updated (#16579) 
* r-knitr : dependencies and version updated

* Adding version conditions for dependencies
 2020-05-12 11:35:41 -05:00
Tomoki, Karatsu
278f8eb7fe modylas: Add flag to use preprocessor when building with Fujitsu compiler. (#16598) 2020-05-12 11:34:28 -05:00
Jose E. Roman
8b06bd7198 New patch release SLEPc 3.13.2 (#16601) 2020-05-12 11:33:46 -05:00
Andrew W Elble
e36aa96392 py-horovod: link dependency for py-torch (#16600) 
fix for same reasons as #16495.
 2020-05-12 11:24:30 -05:00