Commit Graph

7077 Commits

Author SHA1 Message Date
Massimiliano Culpo
15efcbe042
Fix conflicting use of config and mutable_config fixtures in unit tests (#45106)
and add a fixture to detect use of conflicting fixtures
2024-07-09 09:51:04 +02:00
Harmen Stoppels
3212cf86f4
environments.rst: go from simple to advanced (#45004)
* environments.rst: go from simple to advanced
* improvements
* notes about activation
2024-07-08 15:36:18 -07:00
Harmen Stoppels
a04b12a3ef
spec.py: print right deptype in tree (#45091)
Fix a bug where Spec.tree with cover=nodes reduces deptypes from all
in-edges, including from nodes not reachable from the root, which almost
always happens for concrete specs
2024-07-08 18:25:57 +02:00
Harmen Stoppels
297874bfed
spec.py: fix __getitem__ looking outside of dag (#45090)
`Spec.__getitem__` queries dependent edges, which almost always point to
nodes outside the sub-dag considered. It should only ever look at edges
being traversed.
2024-07-08 14:53:51 +02:00
Massimiliano Culpo
74398d74ac
Add type-hints to RepoPath (#45068)
* Also, fix a bug with use_repositories + import spack.pkg
2024-07-08 11:48:39 +02:00
Harmen Stoppels
8a430f89b3
spack -C <env>: use env config w/o activation (#45046)
Precedence:

1. Named environment
2. Anonymous environment
3. Generic directory
2024-07-06 22:02:25 -07:00
Todd Gamblin
ba79542f3c
spack gc: remove debug print statement (#45067)
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-07-05 22:36:45 +02:00
Harmen Stoppels
1d8bdcfc04
config: fix class hierarchy (#45044)
1. Avoid that `self.path` is of type `Optional[str]`
2. Simplify immutable config with a property.
2024-07-05 12:41:13 +02:00
Massimiliano Culpo
95cf341b50
Inject dependencies in repo classes (#45053) 2024-07-05 12:00:41 +02:00
Wouter Deconinck
04044a9744
containers: rm centos7 since EOL (#45049) 2024-07-04 22:22:23 +02:00
Jordan Galby
491cb278f3
spack audit packages: Fix message (#45045)
Fix message formatting of the "virtual dependency cannot have variants" error.
2024-07-04 14:30:30 +02:00
Massimiliano Culpo
c5cdc2c0a2
Heuristic decays to default over time (#45023)
This modifies heuristic to decay to clingo default
over time. The hope is that this helps with specs
that have an optimal solution with a high penalty.

Let target and compiler heuristic decay too, do not
guess compiler
2024-07-04 08:19:52 +02:00
Adam J. Stewart
f951f38883
Add support for macOS Sequoia (#45018) 2024-07-03 10:59:26 -07:00
Massimiliano Culpo
6b85f6b405
ci: deprecate the --dependencies and --optimize option (#45005) 2024-07-02 22:06:52 +02:00
Harmen Stoppels
5b4edb9499
queue -> stack (#45002) 2024-07-02 16:41:29 +02:00
Harmen Stoppels
a6e6093922
spack_yaml.py: fix default_flow_style (#44998) 2024-07-02 14:01:13 +02:00
Harmen Stoppels
2e8b4e660e
spack_yaml: add anchorify function (#44995)
This adds spack.util.spack_yaml.anchorify, which takes a non-cyclic
dict/list structure, and replaces identical values with (back)
references to the first instance, so that yaml serialization will use
anchors.

`repr` is used to identify sub-dags, which in principle is quadratic
complexity in depth of the graph, but in practice the depth is O(1) so
this should not matter.

Then this is used in CI to reduce the size of generated YAML files to
30% of their original size.
2024-07-02 14:00:19 +02:00
Harmen Stoppels
fff126204c
cmd/develop.py: fix readability (#44980)
stage[0] is assumed to be for sources, 1: and onwards is
patches/resources, make that a bit more clear.
2024-07-01 12:14:00 -07:00
Kun Wu
c6da4d586b
cuda: add v12.5.0 (#44971)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-07-01 17:45:04 +00:00
Tamara Dahlgren
61d6fc70e8
Docs: include cmake spec property for the command (#44956) 2024-07-01 10:28:26 -07:00
Harmen Stoppels
fa3f27e8e7
archive.py: undo unrelated changes from #43851 (#44947) 2024-07-01 11:35:32 +02:00
Harmen Stoppels
6b0fefff29
Use composite stage also for develop specs (#44950) 2024-07-01 11:24:16 +02:00
Massimiliano Culpo
f613316282
Flag propagation: restrict to link/run (#44925)
In practice people don't care about having their build dependencies reinstalled with say cflags=-O3 if that is what is set at the input spec, so restrict propagation to link/run deps only.

Also simplify the encoding in asp.
2024-07-01 09:57:51 +02:00
Massimiliano Culpo
1b5b74390f
neoverse-v1: restore py-cinemasci (#44976)
Use a different tactic for determining conflicts.

Give more priority to setting False very old versions.
2024-07-01 09:53:24 +02:00
Harmen Stoppels
e34d9cbe5f
Remove DIYStage (#44949) 2024-07-01 08:33:56 +02:00
Harmen Stoppels
0b3b49b4e0
installer.py: handle external roots the same (#44917)
There was logic not to enqueue build requests for externals if they occur as
roots. That's unnecessary.
2024-06-28 11:26:56 +02:00
Dan Lipsa
4c7d18a772
Spack on Windows: fix "spack load --list" and "spack unload" (#35720)
Fix the following on Windows:

* `spack load --list` (this printed 0 packages even if packages were
  loaded)
* `spack unload <package>` (this said that the package is not loaded
  even if it was)

Update unit tests for `spack load` to also run on Windows (specifically
for ".bat"). This involved refactoring a few tests to parameterize
based on whether the unit tests are being run on a Windows system
(and to account for batch syntax).
2024-06-27 11:44:36 -07:00
Matthew Whitlock
22c86074c8
Fix bug in logfile parsing (#42706)
* Fix bug in logfile parsing

* Cite ECMA-48 standards for CSI

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-27 07:07:30 -06:00
Massimiliano Culpo
ef9e449322
Ensure parent runtime version >= child (#44834)
Fixes a bug where old gcc-runtime libraries would be loaded at runtime, but newer are required by dependencies, breaking the binaries.
2024-06-27 14:58:42 +02:00
dependabot[bot]
d6419f32b8
build(deps): bump mypy from 1.10.0 to 1.10.1 in /lib/spack/docs (#44885)
Bumps [mypy](https://github.com/python/mypy) from 1.10.0 to 1.10.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.10.0...v1.10.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-06-27 12:40:14 +02:00
Miguel
60ed682577
Fix typo in docs (#44891)
Fixes on the rst formatting of the make_jobs
2024-06-27 12:32:16 +02:00
Wouter Deconinck
f916b50491
containers: centos:stream -> centos:stream9 (#44876) 2024-06-27 10:38:56 +02:00
Massimiliano Culpo
b0b6016e12
ASP-based solver: add a generic rule for propagation (#44870)
This adds a generic propagate/2 rule to propagate any
fact to children in the DAG.
2024-06-26 16:02:00 +02:00
Massimiliano Culpo
c0f9f47b8c
Simplify and improve solver heuristic (#44893)
When we changed how to deal with errors in November,
we didn't realize that for an unconstrained choice
rule it is more important in the heuristic to guess
what is NOT in the answer set, since it will be the
majority of options.

Previously this was following automatically from what
was in the answer set, via `1 { ... } 1` cardinality
constraints.

Here we improve the heuristic and the solve time for specs.
2024-06-26 13:08:41 +02:00
psakievich
54d192e026
Steal source was not assigning the package class (#44886)
Fetcher was missing the package class assignment
2024-06-25 23:17:56 -07:00
Tamara Dahlgren
baf82c0245
Docs: Update stand-alone test information (#44755)
Update and slightly reorganize stand-alone test information to include new and improved examples and more links that can be used in PR feedback.
2024-06-25 13:33:41 -07:00
Miguel
536856874c
add documentation for make_jobs variable (#44838)
* add documentation for make_jobs variable

* apply suggested changes

* Update packaging_guide.rst

add suggestions to the documentation

* Update packaging_guide.rst

fix missing quotes in the documentation

* suggestions to packaging_guide.rst
2024-06-25 11:24:49 -06:00
Nicole C
d8b0df6f5b
Make url_fetch tests work on Windows (#44809) 2024-06-25 07:34:11 +00:00
Harmen Stoppels
0282fe9efd
spec_list: do not resolve abstract hashes (#44760) 2024-06-24 16:43:01 +02:00
Tamara Dahlgren
3848c41494
Bugfix: test_is_externally_detectable needs to use mockpackages (#44795) 2024-06-21 12:24:46 +02:00
Harmen Stoppels
f650133f83
build_environment: fix ccache error handling (#44740) 2024-06-20 11:16:24 +02:00
dependabot[bot]
a82fb33b31
build(deps): bump flake8 from 7.0.0 to 7.1.0 in /lib/spack/docs (#44752) 2024-06-18 08:27:15 +02:00
dependabot[bot]
5f35a90529
build(deps): bump urllib3 from 2.2.1 to 2.2.2 in /lib/spack/docs (#44751) 2024-06-18 08:27:04 +02:00
Veselin Dobrev
6e7fb9a308
MFEM: add new version v4.7 (#44010)
* Core change: logic for extracting RPATHs from modules may return
  `None`: filter this out of the set of RPATHs that is auto-generated
* Core change: `CachedCMakePackage` no longer adds ldflags to
  `CMAKE_STATIC_LINKER_FLAGS`: generally these flags are not appropriate
  for static linking (e.g. invocation of `ar`)
* [mfem] Add version 4.7
* [mfem] Add variant for precision (single/double). Enforce consistency
  for precision amongst mfem and hypre/petsc/mumps dependencies
* [mfem] Add cxxstd (and related constraints preventing use of
  old cxxstd values for newer versions of some dependencies)
* [hypre] In line with prior point, added support for specifying
  precision
* [petsc] Add config option to avoid error when building against
  `superlu-dist+rocm`
* [hiop] add proper `raja`/`umpire`/`camp` version constraints for
  `hiop` versions 0.3.99-0.4.x; require `+raja` for `+rocm`, and
  add dependency on `hiprand` for `+rocm`
* [butterflypack, mfem, strumpack, suite-sparse] Require
  `CRAYLIBS_{target-family}` env var to be defined
* [suite-sparse] versions `@7.4:` changed install location of headers:
  add symlink from old location to new location
* [zlib-ng] Fix error where shared libs were not successfully built for
  `%cce@17` (the build did not fail, but the finished `zlib-ng%cce@17`
  install did not have shared libs)
2024-06-11 16:39:22 -07:00
psakievich
337bf3b944
Enable and constrain reuse for GitVersion installations (#43859)
* Preserve higher weight for CLI git ref versions

Currently the concretizer fails if you reuse a git ref version
that has already been installed but modify the spec at all.

See #38484 for futher diagnosis

The issue here is that since there is no established provenance for
these versions the highest weight they are currently assigned is
that of prior install. Re-use checks then fail because the weight of
the version is identical to the solver.

Ironically, these versions are given the highest weights possible when
specified on the CLI for the first time.  They should only appear in a
DAG if they are an exact match or if the user specifies them at the CLI.
Therefore it makes sense to preserve their higher ordering.

Getting this right is critical to moving all branch based versions to a pinned
git-ref in the future.

* [@spackbot] updating style on behalf of psakievich

* Update lib/spack/spack/solver/asp.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Add provenance specific to git ref installs

* Sensitvity to name that I could not track down

* Add regression test

* Adjust test

* Add prefer standard unit-test

* Style

* Add required mock

* Format and mark

* Make unit-test case reproduce CLI investigation

* Remove unnecessary mock package

* [@spackbot] updating style on behalf of psakievich

* Use already developed fixture

* Add zlib-ng to mocks again

* Remove accidental adds

* Remove maintainer

* [@spackbot] updating style on behalf of psakievich

* Rename test file

* [@spackbot] updating style on behalf of psakievich

* Remove unused imports

* Update tests

* [@spackbot] updating style on behalf of psakievich

* Style

* Update lib/spack/spack/test/concretize.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Update solver rule

* Duplicate installed rules for installed_git_version

* Revert "Duplicate installed rules for installed_git_version"

This reverts commit 17223fc8d1.

---------

Co-authored-by: psakievich <psakievich@users.noreply.github.com>
Co-authored-by: Greg Becker <becker33@llnl.gov>
2024-06-11 14:57:09 -06:00
dependabot[bot]
f80287166e
build(deps): bump sphinx-design from 0.5.0 to 0.6.0 in /lib/spack/docs (#44360)
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.5.0 to 0.6.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.5.0...v0.6.0)

---
updated-dependencies:
- dependency-name: sphinx-design
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-06-06 14:34:59 +02:00
dependabot[bot]
a20d34b8aa
build(deps): bump pytest from 8.2.1 to 8.2.2 in /lib/spack/docs (#44553)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.2.1 to 8.2.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.2.1...8.2.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-06-06 08:38:54 +02:00
Harmen Stoppels
3ffe02a2fe
spack edit: allow edit multiple files at once (#44416) 2024-06-05 14:19:11 +02:00
Todd Gamblin
278f5818b7
python: make every view a venv (#44382)
#40773 introduced python-venv, which improved build isolation and avoids issues with,
e.g., `ubuntu`'s system python modifying `sysconfig` to include a (very unwanted)
`local` directory within the default install layout.

This addresses a few cases where #40773 removed functionality, without harming the
default cases where we use `python-venv`.

Traditionally, *every* view with `python` in it was essentially a virtual environment,
because we would copy the `python` interpreter and `os.py` into every view when linking.
We now rely on `python-venv` to do that, but only when it's used (i.e. new builds) and
only for packages that have an `extends("python")` directive.

This again makes every view with `python` in it a virtual environment, but only
if we're not already using a package like `python-venv`. This uses a different
mechanism from before -- instead of using the `virtualenv` trick of copying `python`
into the prefix, we instead create a `pyvenv.cfg` like `venv` (the more modern way
to do it).

This fixes two things:
1. If you already had an environment before Spack `v0.22` that worked, it would
   stop working without a reconcretize and rebuild in `v0.22`, because we no longer
   copy the python interpreter on link. Adding `pyvenv.cfg` fixes this in a more
   modern way, so old views will keep working.

2. If you have an env that only includes python packages that use `depends_on("python")`
   instead of `extends("python")`, those packages will now be importable as before,
   though they won't have the same level of build isolation you'd get with `extends`
   and `python-venv`.

* views: avoid making client code deal with link functions

Users of views and ViewDescriptors shouldn't have to deal with link functions -- they
should just say what type of linking they want.

- [x] views take a link_type, not a link function
- [x] views work out the link function from the link type
- [x] view descriptors and commands now just tell the view what they want.

* python: simplify logic for avoiding pyvenv.cfg in copy views

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-06-04 09:52:21 -06:00
Todd Gamblin
89a0c9f4b3
nvhpc: Do not use -Wno-error with nvhpc (#44142)
In #30882, we made Spack ignore `-Werror` calls so that it could more easily build
projects that inject `-Werror` into their builds. We did this by translating them to
`-Wno-error` in the compiler wrapper. However, some compilers (like `nvhpc`) do not
support `-Wno-error`. We need to exclude them from this feature until they do.

- [x] make a property on `PackageBase` for `keep_werror` that knows not to use it for
      `nvhpc`.

- [x] update property so that it keeps only the specific `-Werror=...` args for newer nvhpc's,
      which support `-Wno-error` but not `-Wno-error=...`

---------

Co-authored-by: William Mou <william.mou1024@gmail.com>
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-06-04 03:46:35 -07:00