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Author SHA1 Message Date
Daryl W. Grunau
f5102cd582 call the universal 'mpifc' instead of hardcode 'mpif90' (#18162) 
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
 2020-08-24 15:44:20 -05:00
Harmen Stoppels
17f7d9f44c openmpi: fix concretization (#18233) 2020-08-24 19:05:39 +02:00
Erik Schnetter
53cfca1f59 simulatioion: Declare dependency on asdf-cxx (#18018) 
* simulationio: Declare dependency on asdf-cxx

* Rename "develop" to master"; add descriptions to variants

* Add maintainer
 2020-08-24 11:25:43 -05:00
David Gardner
3c866294e1 add github url as backup (#18223) 2020-08-23 16:43:57 -05:00
t-nojiri
b721a2e54b soapdenovo-trans: build on aarch64 (#18187) 
* samtools: Add version 0.1.8 for OSS soapdenovo-trans.

* Add depend on zlib and samtools to build on aarch64.

* soapdenovo-trans: Change the condition of depend on zlib and samtools.
 2020-08-22 22:11:19 -05:00
David Gardner
a6ca236c26 add tcl 6.8.10 (#18221) 2020-08-22 22:02:57 -05:00
Sergey Kosukhin
b5e78bce06 OpenMPI: sanitize dependent build environment. (#15360) 2020-08-22 22:01:41 -05:00
Sergey Kosukhin
9fdb945383 NetCDF: fix constraints. (#16719) 2020-08-22 16:06:17 -05:00
Teodor Nikolov
dc5176fbae [hpx] Two new variants for upcoming v1.5, stable and master (#18022) 
* New package: cxxopts

* Use +unicode instead of unicode=True

- Make the unicode option more explicit

* Add two new variants to spack for upcoming 1.5, stable and develop

* Add as maintainer

* Add depends_on on clauses

* Remove unrelated change
 2020-08-22 16:00:11 -05:00
Carson Woods
c743d219aa qthreads: add additional configuration options (#15833) 
* Add new config options for qthreads

* Fix syntax error and add option for specifying stack size

* Fix flake8 issues

* Add input validation for the stack size variant and add explicit enable for spawn cache

* Fix flake8 issues with input validation code
 2020-08-22 15:58:41 -05:00
Jianwen
e26e532eb3 vifi: a new package. [WIP] (#14287) 
* vifi: a new package.

* Fix url.

* Add dependencies.
 2020-08-22 15:23:04 -05:00
noguchi-k
15facf2171 ibm-java: add conflicts for aarch64 (#13728) 2020-08-22 15:22:50 -05:00
Ruben Di Battista
f902202b5e Add scantailor package (#12833) 
* Add scantailor

* qt: Fix build w/ GCC9 for @4:

* qt: Fix patch filename and qt version

* Fix typo in patch name

* scantailor: Fix version

* scantailor: Use a more-modern fork

* scantailor: Remove unused patch file

Co-authored-by: Ruben Di Battista <ruben.di-battista@polytechnique.edu>
 2020-08-22 15:22:37 -05:00
Andreas Baumbach
27b9727926 Add new package arbor (#11914) 
* Add new package arbor

Change-Id: I70a442d6ad74979d13bd9f599df238c085d4baf9

* Update package.py

* add additional dependencies

* change download to tar-ball

* py26 compatibility

* restrict noqas and expand comment

Co-authored-by: Eric Müller <mueller@kip.uni-heidelberg.de>
 2020-08-22 14:42:46 -05:00
Brian Homerding
2e2c06121a llvm-openmp-ompt: Additional dependencies and adding variant (#11266) 
* llvm-openmp-ompt: Additional dependencies and adding variant for disabling building libomptarget

* Flake8 fixes
 2020-08-22 14:23:04 -05:00
Levi Baber
d65b9ad195 mark: added new package (#10513) 
* mark: Create new package.

* mark: change description.

* mark: change description.

* mark: Delete set_up environment.

* mark: replace join_path(prefix.bin, mark) with prefix.bin.mark

* mark: new license and sha256 hash

Co-authored-by: lingnanyuan <1297162327@qq.com>
 2020-08-22 14:01:00 -05:00
George Hartzell
b53b9fd17e Fix redundant reset of terminal in prompt example (#17698) 
I know that it's just an example, but I was trying to figure out what was going on and it wasn't making sense....

`tput sgr0` resets the terminal state (http://linuxcommand.org/lc3_adv_tput.php) and I can't see any reason to do it twice.  Deleting the second occurrence doesn't seem to break the fancy prompt effect.
 2020-08-22 13:27:39 -05:00
Elizabeth Fischer
8ce5718922 qgis: Updates for proj@6 (#16172) 
* qgis

* Update package.py

QGIS 3.12.1 can use PROJ >= 4.9.3.  Therefore both version restrictions on PROJ were incorrect.
https://github.com/qgis/QGIS/blob/final-3_12_1/INSTALL

* Update package.py

Add explanation to (hopefully temporary) removal of hdf5 dependency.

* Remove overly restrictive GRASS version number.

* flake8

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
 2020-08-22 13:22:57 -05:00
Erik Schnetter
488d8ae747 openmpi: Update hwloc version bounds (#18040) 
`openmpi @4:` can use `hwloc @2:`.
 2020-08-22 13:10:11 -05:00
Greg Becker
3c6544fcbf fix mailmap for becker33 (#18215) 2020-08-22 12:46:48 -05:00
Christoph Junghans
adc98ae409 votca*: add v1.6.2 (#18218) 2020-08-22 11:38:41 -06:00
darmac
74d274f02f Add new package: consul (#18044) 
* Add new package: consul

* fix package type

* refine install phase
 2020-08-22 10:51:20 -05:00
Richarda Butler
d599e4d9d4 Added the file path for running a specific test (#18214) 2020-08-21 17:42:24 -05:00
srekolam
febc8ccb15 new recipe for rocalution and fix for rocm-smi-lib (#18211) 2020-08-21 13:34:06 -05:00
Jen Herting
512aa40151 [py-numba] added version 0.50.1 (#17880) 
* [py-numba] fixing upper limit for conditional dependency

* [py-numba] added version 0.50.1

* [py-numba] Specifying llvmlite version for new version
 2020-08-21 12:45:57 -05:00
Jen Herting
c24b838407 [py-llvmlite] new version 0.33.0 (#17878) 
* [py-llvmlite] new version 0.33.0

* [py-llvmlite] newer version of python required
 2020-08-21 10:54:06 -05:00
g-mathias
d222551185 namd: latest version 2.14 (#18167) 
* upgrade to version 2.14; added target architecture optimization

* renamed devel-> (adamjstuart); keep 2.14bx versions

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
 2020-08-21 09:55:53 -05:00
Adam J. Stewart
07fc495c94 py-pandas: added v1.1.1 (#18206) 2020-08-21 08:49:32 +02:00
Ryan Mast
3a1334bc6a helics: Add version 2.6.0 (#18208) 
* helics: Add version 2.6.0

* Remove bms version from HELICS package
 2020-08-20 22:24:46 -05:00
Jordan Ogas
1666db60d0 charliecloud: add 0.18 (#18200) 
* add 0.18, remove older versions

* update url

* fix typo
 2020-08-20 20:16:34 -05:00
Michael Kuhn
fc3b4657ce sqlite: Add 3.33.0 (#18145) 2020-08-20 17:17:02 -05:00
g-mathias
880ff1d795 new dakota version 6.12; included boost versions limit; changed default url (#18168) 
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
 2020-08-20 17:14:40 -05:00
Michael Kuhn
11b1ce84cf docs: List tar and some compressors in prerequisites (#18169) 
Fixes #18152
 2020-08-20 17:13:47 -05:00
vvolkl
6b6f6db431 [gaudi] sadly, the cmake fixes are postponed to next version (#18171) 2020-08-20 17:11:45 -05:00
vvolkl
cd06100001 [podio] new version, cxxstd 17 now mandatory (#18191) 2020-08-20 17:06:52 -05:00
Harmen Stoppels
ebe5a5652c Add rocSPARSE, rocSOLVER, hipSPARSE and hipBLAS (#18108) 2020-08-20 14:55:02 -05:00
Greg Becker
ad9cd25285 allow external packages that violate conflicts (#18183) 2020-08-20 10:16:48 -07:00
Massimiliano Culpo
573ce3fe81 gcc: fixed compilation on OpenSUSE (#18190) 
Set location for dependencies specifying explicitly both
the include and lib path. This permits to handle cases where
the libraries are installed in lib64 instead of lib.

fixes #17556
fixes #10842
closes #18150
 2020-08-20 17:42:18 +02:00
Massimiliano Culpo
1addcff724 Test "is_extension" after a round trip to dict (#18188) 
closes #3887
closes #3853
 2020-08-20 08:08:49 -07:00
Marc Mengel
d5c3b876e0 detatch binutils usage from bootstrap in gcc variants (#18116) 2020-08-20 17:06:22 +02:00
vvolkl
286c3d6cbc [lcio] set up run time paths (#18109) 
* [lcio] set up run time paths

* [lcio] update runtime

* [lcio] flake8
 2020-08-20 09:43:59 -05:00
Greg Becker
aa4fc2ac44 codecov: set project threshold to 0.2% (#18184) 2020-08-20 09:43:24 -05:00
Isaac Whitfield
b9adbac5c6 libimobiledevice: new package (#10819) 2020-08-20 11:22:04 +02:00
ketsubouchi
8a02ef4d51 bwa: patch Makefile to permit the use of compilers other than GCC (#18189) 2020-08-20 09:55:05 +02:00
Tim Haines
c786eb46bb dyninst: use elfutils for all versions (#18063) 2020-08-20 08:36:02 +02:00
Elizabeth Fischer
306f3a1232 Make finding of NetCDF and HDF5 more explicit. (#18166) 
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
 2020-08-20 08:34:53 +02:00
Greg Becker
ccf94ded67 Compilers: use Compiler._real_version for flag version checks (#18179) 
Compilers can have strange versions, as the version is provided by the user.  We know the real version internally, (by querying the compiler) so expose it as a property and use it in places we don't trust the user.  Eventually we'll refactor this with compilers as dependencies, but this is the best fix we've got for now.

- [x] Make `real_version` a property and cache the version returned by the compiler
- [x] Use `real_version` to make C++ language level flags work
 2020-08-19 21:56:06 -07:00
darmac
1650824ef5 Add new package: phoenix (#18143) 2020-08-19 20:33:37 -05:00
darmac
0187884591 qemu: add pkgconfig to avoid build error (#17929) 2020-08-19 20:32:47 -05:00
darmac
d9722e2730 nfs-ganesha: fix compile error on debian (#18102) 
* nfs-ganesha: fix compile error on debian

* add type for py-stsci-distutils
 2020-08-19 20:32:02 -05:00