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Author SHA1 Message Date
Pitamila
56ab4c9820 py-scipy: -fPIC appending trouble with gcc@10: (#31698) 
`-fPIC` mandatory option squeezed by error, the
NPY_DISTUTILS_APPEND_FLAGS appears handy

Co-authored-by: duperrayp <duperrayp@u-un00s16835>
 2022-07-27 10:20:49 -07:00
wspear
02151565e9 Tau must get GCC path from environment on Cray (#31751) 
* Tau must get GCC path from environment on Cray

self.compiler doesn't provide the path to the gcc compiler when using cray cc and the spack internal compiler overrides the location in PATH. If possible get the location from the GCC_PATH variable instead.

* Fix flake8 issues

* Update package.py
 2022-07-27 10:04:06 -07:00
Jonathan R. Madsen
3db87f207e Update omnitrace package with v1.3.0 (#31754) 2022-07-27 10:01:30 -07:00
Adam J. Stewart
fdd914c990 py-sphinx: add v5.1.1 (#31756) 2022-07-27 09:58:15 -07:00
Melven Roehrig-Zoellner
3d9b143296 tixi: new versions (#31761) 2022-07-27 09:51:21 -07:00
Melven Roehrig-Zoellner
179afcac4e valgrind: new version (#31762) 2022-07-27 09:48:55 -07:00
Melven Roehrig-Zoellner
1ab7f65920 itensor: new version, restrict hdf5 to :1.10 (#31764) 2022-07-27 09:44:38 -07:00
Harmen Stoppels
ade7bcd514 curl: 7.84.0 (#31725) 2022-07-26 20:37:49 -06:00
eugeneswalker
5b4c076ddb cabana: add cajita variant (#31753) 
* cabana: add cajita variant

* Update var/spack/repos/builtin/packages/cabana/package.py

Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com>

* cabana: cannot build +cajita ~mpi

Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com>
 2022-07-26 17:33:15 -07:00
eugeneswalker
b38a814dc9 e4s ci stack: add spec: hdf5-vol-async (#31747) 
* e4s ci stack: add spec: hdf5-vol-async

* hdf5-vol-async: add e4s tag
 2022-07-26 16:21:56 -06:00
eugeneswalker
3b692875d8 mpich@4.0.2 %oneapi: patch config.rpath (#31740) 2022-07-26 15:41:42 -06:00
Harmen Stoppels
1319e2d261 openmpi: +pmi implies schedulers=slurm (#31722) 2022-07-26 14:04:55 -07:00
Harmen Stoppels
cffdd86d11 libjwt: new versions, missing dep, disable examples (#31723) 2022-07-26 14:04:27 -07:00
Harmen Stoppels
43d53a032a jansson: new version, disable docs (#31724) 
We don't have the build deps for the docs, so disable for now.
 2022-07-26 14:04:11 -07:00
Harmen Stoppels
15ee035f97 json-c: 0.16 (#31726) 2022-07-26 13:50:23 -07:00
Harmen Stoppels
c8c46bd012 munge: 0.5.15 (#31727) 2022-07-26 13:50:08 -07:00
Harmen Stoppels
fa3808bebd libgcrypt: bump (#31728) 2022-07-26 13:49:52 -07:00
Harmen Stoppels
644cfb5197 libgpg-error: bump (#31729) 2022-07-26 13:44:12 -07:00
Harmen Stoppels
859b56a105 gnupg: bump and deprecate over cve (#31730) 2022-07-26 13:43:53 -07:00
Harmen Stoppels
ce039e4fa5 environment.py: reduce # of locks further (#31643) 
* environment.py: reduce # of locks further
 2022-07-26 09:00:27 -07:00
Harmen Stoppels
e2056377d0 containerize: fix concretization -> concretizer (#31594) 
* containerize: fix concretization -> concretizer

* fix test
 2022-07-26 08:56:24 -07:00
Harmen Stoppels
a552c27f74 cmake: missing patch releases (#31676) 2022-07-26 08:54:23 -07:00
Chuck Atkins
f38a2ebb25 llvm: Variant and dependency cleanup (#31331) 
* llvm: Use variant when clauses for many of the expressed conflicts

* llvm: Remove the shared variant as it wasn't really used

* llvm: Remove unnecessary deps and make explicit the ones that are

* llvm: Cleanup patch conditions

* pocl: Update for llvm cleanup

* unit-test: update unparse package hash with the updated llvm package

* llvm: Fix ppc long double patching and add clarifying comments
 2022-07-26 10:45:20 -05:00
Stephen Sachs
6a240c9b39 Fix self.extension for symlinks (#31743) 
`self.archive_file` is (among others) a symlink to a tarball. `extension()` on a
symlink will result in no extension. This patch fixes the behavior introduced in
https://github.com/spack/spack/pull/31618.

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-07-26 13:05:41 +00:00
eugeneswalker
0662bbdc43 openblas %oneapi: patch f_check for proper linkage (#31737) 2022-07-25 15:38:11 -07:00
Richard Berger
7be0dac36b new package: singularity-eos (#31500) 2022-07-25 23:41:24 +02:00
snehring
885a7a1979 gdal: fixing typo for libxml2 (#31734) 2022-07-25 14:05:45 -06:00
psakievich
8cde20997d GCC: Add bootstrap conflict for M1 (#31189) 2022-07-25 15:12:54 -04:00
Paul Ferrell
babb0edf07 LLVM requires swig version > 3 (#31625) 2022-07-25 15:50:22 +02:00
haralmha
bf838fe15f llvm: Add missing include for version range 8 to 11 (#31639) 2022-07-25 11:39:12 +02:00
Harmen Stoppels
b56871dd9c Fix stage with uri params (#31618) 
* don't determine extension of a url

* parse url to drop query params from filename
 2022-07-25 10:31:13 +02:00
snehring
fe0643a14e wget: replacing prior workaround with proper fix (#31699) 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2022-07-25 10:29:28 +02:00
Adam J. Stewart
cd4d657c2f py-torchdata: add new package (#31704) 
* py-torchdata: add new package

* third_party deps only in 0.4+
 2022-07-25 10:22:53 +02:00
Adam J. Stewart
afbb4dbc88 py-torchmetrics: add v0.9.3 (#31707) 2022-07-25 10:22:25 +02:00
Adam J. Stewart
24869fd469 py-geopandas: add v0.11.1 (#31710) 2022-07-25 10:22:15 +02:00
Adam J. Stewart
d46e81798a py-sphinx: add v5.1.0 (#31711) 2022-07-25 10:21:52 +02:00
Adam J. Stewart
5850afc9dc Sphinx 5.1.0 breaks doc builds (#31709) 2022-07-24 21:45:01 +00:00
Ishaan Desai
241c7f7914 [py-pyprecice] add v2.4.0.0 (#31697) 
* Add py-pyprecice v2.4.0.0

* Adding lower bound to pip dependency

* Removing when=@:2.1 from dependencies packaging and pip
 2022-07-24 15:31:51 -05:00
Morten Kristensen
85b3c1d812 py-vermin: add latest version 1.4.1 (#31708) 2022-07-24 16:21:40 +02:00
Harmen Stoppels
215a99cbc3 clingo patch fixed in patch release (#31690) 2022-07-22 10:34:04 -07:00
Harmen Stoppels
517293efe0 llvm: fix patch already applied on main branch (#31694) 2022-07-22 09:46:03 -07:00
Harmen Stoppels
5cf7d8e9ef coreutils: gnulib patch (#31693) 
Co-authored-by: snehring <snehring@iastate.edu>
 2022-07-22 15:36:14 +02:00
Harmen Stoppels
fce861d2ac Mark external as explicit only when installing explicitly (#31665) 2022-07-22 15:20:17 +02:00
Hector Martinez-Seara
cfdfdf77e0 gromacs: Added version 2021.6 (#31692) 2022-07-22 15:18:59 +02:00
Harmen Stoppels
799553d302 autotools: add -I flag when non-standard libtool (#31677) 
When
1. Spack installs libtool,
2. system libtool is installed too, and
3. system automake is used

Spack passes system automake's `-I <prefix>` flag to itself, even though
it's a default search path. This takes precedence over spack's libtool
prefix dir. This causes the wrong `libtool.m4` file to be used (since
system libtool is in the same prefix as system automake).

And that leads to error messages about incompatible libtool, something
something LT_INIT.
 2022-07-22 15:11:38 +02:00
Massimiliano Culpo
5cf7bf3770 Use pkg_cls in spack.mirror.get_all_versions (#31636) 
fixes #31627

spack.mirror.get_all_versions now uses the package class
instead of the package object in its implementation.

Ensure spec is concrete before staging for mirrors
 2022-07-22 10:04:17 +02:00
Erik Schnetter
2b0b573827 mpitrampoline: New version 4.2.0 (#31683) 2022-07-22 09:22:24 +02:00
Nicholas Sly
0e6b57e953 py-torch: use immutable URLs for open-ce patches (#31672) 
* Update open-ce patches for py-torch to us immutable URLs.  Update magma dependency specs to be more explicit.

* Address comments for PR regarding URLs and conflicting variants.

Co-authored-by: Nicholas Cameron Sly <sly1@llnl.gov>
 2022-07-21 18:02:34 -06:00
Stephen Sachs
ee39fab226 [py-numpy] Newer versions do not build with icc (#31637) 
* [py-numpy] Newer versions do not build with `icc`

Workaround until https://github.com/numpy/numpy/issues/22011 is solved.

* [py-numpy] Remove whitespaces
 2022-07-21 12:33:41 -06:00
AMD Toolchain Support
5ffc095f63 Add version 3.2 of AMD libraries (#31538) 2022-07-21 13:32:28 +02:00