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Commit Graph

7440 Commits

Author SHA1 Message Date
Justin Stanley
87615d54cc r-multitaper: new package at 1.0-14 (#10110) 2018-12-15 20:08:33 +01:00
Justin Stanley
c973d761e9 r-popgenome: new package at 2.6.1 (#10108) 2018-12-15 08:44:20 -06:00
Justin Stanley
3b59bf9efa r-xnomial: new package at 1.0.4 (#10111) 
* r-xnomial: new package at 1.0.4

* r-xnomial: add list_url
 2018-12-15 08:43:08 -06:00
Adam J. Stewart
caf94253e0 Add latest version of libsigcpp (#10103) 2018-12-14 21:09:33 -06:00
Adam J. Stewart
a55976747e Add latest version of bdw-gc (#10100) 2018-12-14 21:09:19 -06:00
Adam J. Stewart
316df3cd37 Add latest version of libatomic-ops (#10099) 2018-12-14 21:09:04 -06:00
Levi Baber
7a0c334d81 pbsuite: pythonpath should be prepended not set (#10113) 2018-12-14 18:12:51 -08:00
Justin Stanley
6469f8953d clp: add explicit datadir (#10109) 2018-12-14 16:20:47 -06:00
Andrew Gaspar
e9281cc436 Updates to Google Test: (#10079) 
- Add version 1.8.1
- Change to sha256 checksums
 2018-12-14 13:23:08 -06:00
Michael Kuhn
f224f4a57e qt: fix openssl dependency for older versions (#10106) 2018-12-14 11:11:31 -06:00
Adam J. Stewart
34499c9b82 Add latest version of libxslt (#10098) 2018-12-14 10:47:23 -06:00
Adam J. Stewart
d7b4160e67 Add latest version of poppler (#10101) 2018-12-14 10:47:07 -06:00
Adam J. Stewart
bfdbadf2bb Add latest version of cairo (#10102) 2018-12-14 10:46:52 -06:00
Greg Becker
d2d0ab06b7 Fix spack package inheritance for module variables (#10097) 
* we weren't properly setting module variables for the root package in a DAG -- just for transitive dependencies.
 2018-12-14 08:37:22 -08:00
Adam J. Stewart
05f9c68c30 Add latest version of meson (#10104) 2018-12-14 09:10:55 -06:00
Elsa Gonsiorowski, PhD
76bfdd65fc make dtcmp an autotools spackage (#10095) 
* make dtcmp an autotools spackage

* better code
 2018-12-14 09:08:57 -06:00
Adam J. Stewart
3432a71430 Add new packages for ELSD and ELSDc (#10072) 2018-12-13 22:05:24 -06:00
Matthias Diener
289ad8f375 cmake: add version 3.13.2 (#10092) 2018-12-13 17:35:58 -06:00
Miles Perry
b7a2192f91 Feature/spm (#10053) 
* extract spm12.ctf to get binaries and libraries

* flake8 edits

* flake8 edits

* spm: updates

* spm: previous version
 2018-12-13 12:43:45 -06:00
Eric
7f60226662 trf: add version 4.07b and install fixes (#10093) 
* trf: add version 4.07 and install fixes

* suggested fixes
 2018-12-13 12:42:26 -06:00
Satish Balay
e87d394038 superlu-dist: update v6.1.0 checksum (#10078) 2018-12-13 09:05:47 -06:00
Jon Rood
5dd9a321a4 Add CUDA_HOME variable to cuda module file. (#10088) 2018-12-13 08:05:13 +01:00
Christoph Junghans
0b42cf4d96 lammps: add new stable version (#10086) 2018-12-12 11:08:59 -06:00
Denis Davydov
7d5058ebe4 boost: add 1.69.0 (#10083) 
signals (v1) was removed in 1.69.0
 2018-12-12 10:14:47 -06:00
Eric
ce00c13297 LEMON: Create new package (#10077) 2018-12-11 23:08:45 -06:00
Elsa Gonsiorowski, PhD
2b483f24f1 added sha256 for scr v1.2.0-2 (#10082) 2018-12-11 22:56:23 -06:00
Mark W. Krentel
ab8870fd51 gcc: fix sys_ustat.h patch for gcc 4.8 and 4.9 (#10081) 
The sys_ustat.h.patch to file sanitizer_platform_limits_posix.cc from
PR #10046 does not apply cleanly to gcc 4.8 or 4.9 (or earlier).

GCC up to 4.8.x either don't have libsanitizer or else don't include
ustat.h in sanitizer_platform_limits_posix.cc.

GCC 4.9.x includes ustat.h, but needs a slightly different patch.

The patch applies to GCC 5.x up to 6.4, and 7.x up to 7.3 and also
8.1.0.

The patch is already included in the tar files for gcc 6.5.0, 7.4.0
and 8.2.0.
 2018-12-11 22:54:12 -06:00
Stephen Herbein
92229e46e3 flux-core & flux-sched: fix compilation and dependencies (#10049) 
* flux-sched: fix compilation errors

configure was being run twice becuase the staging symlinks were
confusing autotools

mirror flux-core in building in a subdirectory to avoid other common
compilation problems, like the one in PR #3543

* flux-core: update dependencies

munge is no longer a dependency

provide hints for lua version so that `spack install flux-core` works
"out-of-the-box". Currently, when no explicity version is provided, the
concretizer attempts to use lua@5.3, which is invalid. Closes #10000
 2018-12-11 22:34:58 -06:00
Brian Van Essen
abd575f273 Update LBANN generator and bug fix (#9906) 
* Added a package for the MDAnalysis toolkit.

* Added Ninja as the generator for LBANN, Hydrogen, and Aluminum.  Also
fixed a bug in how the Conduit variant is included in LBANN.  Added
new versions for Hydrogen and LBANN.

* Updated lbann package so that the CMAKE parameters are set when the
variant is on and off.
 2018-12-10 15:12:43 -08:00
Lukasz
22446d7303 mofem: add new releases and minor changes (#9138) 2018-12-10 14:33:31 +01:00
Matthias Diener
2670823c1e cloc: URLs are now consistent (#10068) 
Fixed in upstream:
https://github.com/AlDanial/cloc/issues/352
 2018-12-10 14:28:52 +01:00
Tom Payerle
8f0fc259c8 metis: Fix issues with gcc6 and misleading indentation (#10058) 
Added patch to GKlibSystem.cmake to disable warnings (which get
promoted to errors) due to -Wmisleading-indentation being added
to -Wall in gcc 6
 2018-12-09 13:08:38 -06:00
Matthias Diener
f0326c0ccf gcc: add versions 7.4, 6.5 (#10061) 2018-12-08 09:22:28 -06:00
Jon Rood
2f80432f62 OpenMPI: adding static libraries with slurm support for latest versions. (#10055) 2018-12-08 13:49:09 +01:00
Abhinav Bhatele
05155cbc59 TraceR: add release tag/version (#10054) 2018-12-08 01:09:48 -06:00
Cameron Smith
130706d1b8 pumi: shared variant (#10057) 2018-12-08 01:08:58 -06:00
Matthias Diener
718379eea1 eztrace: add new package (#10060) 2018-12-08 01:06:28 -06:00
Justin Stanley
3955f7cba5 r-expint: new package at 0.1-5 (#10043) 2018-12-07 18:21:40 -08:00
Axel Huebl
892ae2043f Fix Catch2 Single Header (#10022) 
Fix the install of the single header amalgate in catch2.

The public API for catch < 2.3.0 was "#include <catch.hpp>".
For 2.3.0+ it is "#include <catch2/catch.hpp>"
 2018-12-07 18:13:40 -08:00
James Clark
1650e9c0b2 gcc: Add patch to build GCC with glibc 2.28 and later (#10046) 2018-12-07 18:06:07 -08:00
Justin Stanley
4471f9ea32 pbsuite: new package at 15.8.24 (#10059) 2018-12-07 18:01:44 -08:00
Justin Stanley
4d5b136270 scallop: new package at 0.10.3 (#10041) 2018-12-07 17:39:07 -08:00
Justin Stanley
76ab54caec r-sseq: new package at 1.20.0 (#10042) 2018-12-07 11:24:55 -06:00
Justin Stanley
d72ba01a71 r-blockmodeling: new package at 0.3.1 (#10044) 2018-12-07 11:24:43 -06:00
Mario Melara
138d74f40c Spades: Add version 3.13.0 (#10033) 
* Spades: Add version 3.13.0

In version 3.13.0 the CmakeLists.txt dir is at a different location than
in other versions. Versions up to 3.12.0 are located in "src" whereas
3.13.0 is a level deeper at "assemblers/src".

* Remove git and add new version hash
 2018-12-07 11:24:17 -06:00
Justin Stanley
fb5880ab14 clp: new package at 1.16.11 (#10040) 2018-12-06 19:31:33 -08:00
Michael Kuhn
6ec8e4146f cdo: fix URLs (#10025) 2018-12-06 18:04:50 -06:00
Gregory Becker
b072c9b457 multimethod: slight refactoring, documentation for code review 2018-12-06 15:48:23 -08:00
Gregory Becker
2621af41d1 fix MRO for multimethod.__call__ using iterative algorithm. 
Add tests MRO for inherited multimethods with multiple inheritance
Add tests for inherited and overridden multimethods
 2018-12-06 15:48:23 -08:00
Todd Gamblin
61b859193d multimethod uses Spec() instead of parse_anonymous_spec() 
- simplify logic in multimethod
- remove the requirement of multimethod invocations to walk up the stack.
 2018-12-06 15:48:23 -08:00