Commit Graph

20357 Commits

Author SHA1 Message Date
Satish Balay
1c5587f72d
petsc: update rocrand location wrt rocm@5.1.0 (#30790)
rocm-5.1.0 removed librocrand.so from ROCM_DIR/rocrand/lib location (but  includes are still at this location)

/opt/rocm-5.0.2/lib/librocrand.so
/opt/rocm-5.0.2/rocrand/lib/librocrand.so
/opt/rocm-5.1.0/lib/librocrand.so

drwxr-xr-x 2 root root 617 Mar  8 08:20 /opt/rocm-5.0.2/rocrand/include
drwxr-xr-x 2 root root 617 Mar 31 09:48 /opt/rocm-5.1.0/rocrand/include
2022-05-24 11:54:29 +02:00
Mr-Timn
6e7eb49888
su2: add v7.3.1 (#30794) 2022-05-24 10:50:16 +02:00
Paul Wolfenbarger
3df4a32c4f
trilinos: add adelus, aprepro and teuchos variants (#28935) 2022-05-24 09:49:33 +01:00
Adam J. Stewart
95b03e7bc9
gplates: add v2.3.0 (#30676) 2022-05-24 08:02:39 +02:00
Scott Wittenburg
63402c512b
Revert "Added cloud_pipline for E4S on Amazon Linux (#29522)" (#30796)
This reverts commit 07e9c0695a.
2022-05-23 21:12:48 -06:00
Brian Van Essen
736fddc079
Bugfix hwloc find cuda (#30788)
* Added autotools configure flags to ensure that hwloc finds the correct
version of CUDA that it was concretized against, rather than the first
one that package config finds.

* Added support for finding the correct version of ROCm libraries.  Fixed Flake8.

* Fixed guard on finding ROCm library
2022-05-23 20:17:46 -06:00
Jen Herting
036048c26f
[py-h2] added version 3.2.0 and 4.1.0 (#29804)
* [py-h2] py-wheel is implied by PythonPackage

* [py-h2] python dependencies should be type=('build', 'run')

* [py-h2] fixed dependencies for py-h2@4.0.0

* [py-h2] added version 3.2.0

* [py-h2] added version 4.1.0

* [py-h2] Older version requires py-enum34 for older versions of python
2022-05-23 17:56:45 -07:00
Evan Bollig
07e9c0695a
Added cloud_pipline for E4S on Amazon Linux (#29522)
Add two new cloud pipelines for E4S on Amazon Linux, include arm and x86 (v3 + v4) stacks.

Notes:
- Updated mpark-variant to remove conflict that no longer exists in Amazon Linux
- Which command on Amazon Linux prefixes on all results when padded_length is too high. In this case, padded_length<=503 works as expected. Chose conservative length of 384.
2022-05-23 15:33:38 -06:00
snehring
f24886acb5
usearch: adding in new version, updating checksums (#30776) 2022-05-23 13:50:50 -07:00
snehring
5031578c39
genemark-et: updating to 4.69 (#30793) 2022-05-23 13:36:26 -07:00
Maciej Wójcik
ff980a1452
plumed: add versions up to v2.8.0 (#30787) 2022-05-23 20:07:47 +00:00
marcus-elia
383356452b
abseil-cpp: add v20211102 (#30785) 2022-05-23 18:52:39 +02:00
Cody Balos
5fc1547886
xsdk-examples: add v0.3.0 (#30770)
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>
2022-05-23 18:45:11 +02:00
Manuela Kuhn
68cd6c72c7
py-rnc2rng: fix 2.6.5 and add 2.6.6 (#30784) 2022-05-23 08:02:13 -07:00
Jean Luca Bez
3d2ff57e7b
hdf5-vol-async: update new version, tests, and runtime envs (#30713)
* Update h5bench maintainers and versions

* Include version 1.1 for h5bench

* Correct release hash and set default version

* Update .tar.gz version

* Include new version and update runtime

* Update year

* Update package.py

* Update package.py
2022-05-23 09:28:26 -04:00
Massimiliano Culpo
3bc656808c
llvm: make "omp_as_runtime" variant conditional (#30782)
fixes #30700

To avoid clingo adding penalties for not using the
default value for a variant, it's better to model
the variant as conditional where possible.
2022-05-23 14:21:11 +02:00
Ben Bergen
7ded692a76
gdb: add v11.2 (#30780)
- This resolves bug https://sourceware.org/PR28302
2022-05-23 12:18:26 +02:00
MichaelLaufer
aa3c7a138a
py-pyfr: Add v1.14.0, add LIBXSMM variant (#30612)
* Update PyFR, Gimmik versions. Add PyFR LIBXSMM variant

* Fixes

* Changes to variants

* Update py-gimmik version requirement in py-pyfr

* Revert "Update py-gimmik version requirement in py-pyfr"

This reverts commit 3b3fde3042.

* Update libxsmm conflicts
2022-05-22 12:01:21 -06:00
Paul Kuberry
42441cddcc
Add Teuchos patch that fixes implicit casting of complex numbers (#30777) 2022-05-22 09:26:33 -04:00
Abhik Sarkar
b78025345b
Feature/composed boost pkg deps p3 (#28961)
* This commit removes the Boost.with_default_variants to variants that packages are precisely dependant upon. This is the third batch of 16 packages with modified boost dependencies.

* style fix

* Update var/spack/repos/builtin/packages/sympol/package.py

Co-authored-by: Tim Haines <thaines.astro@gmail.com>

* fix style

* Apply suggestions from code review

Co-authored-by: Tim Haines <thaines.astro@gmail.com>

* Fix Trilinos boost deps

* Fix style

Co-authored-by: Tim Haines <thaines.astro@gmail.com>
Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
2022-05-21 15:57:59 -07:00
Harmen Stoppels
2113b625d1
gcc: add build_type and profiled variants (#30660)
Add a `build_type` variant, which allows building optimized compilers,
as well as target libraries (libstdc++ and friends).

The default is `build_type=RelWithDebInfo`, which corresponds to GCC's
default of -O2 -g.

When building with `+bootstrap %gcc`, also add Spack's arch specific
flags using the common denominator between host and new GCC.

It is done by creating a config/spack.mk file in def patch, that looks
as follows:
```
BOOT_CFLAGS := $(filter-out -O% -g%, $(BOOT_CFLAGS)) -O2 -g -march=znver2 -mtune=znver2
CFLAGS_FOR_TARGET := $(filter-out -O% -g%, $(CFLAGS_FOR_TARGET)) -O2 -g -march=znver2 -mtune=znver2
CXXFLAGS_FOR_TARGET := $(filter-out -O% -g%, $(CXXFLAGS_FOR_TARGET)) -O2 -g -march=znver2 -mtune=znver2
```
2022-05-21 23:44:51 +02:00
Jen Herting
c6c3d243e1
New package: py-motor (#30763)
* New package: py-motor

* Fixed dependency errors

* Fixed flake style errors

* Fixed linked issue

Co-authored-by: Viv Eric Hafener <vehrc@sporcbuild.rc.rit.edu>
2022-05-21 11:36:37 -05:00
Manuela Kuhn
870b997cb6
py-ww: add new package (#30767)
* py-ww: add new package

* Add missing py-pytest-runner dependency
2022-05-21 11:28:53 -05:00
snehring
c9492f1cd4
paml: add v4.10.3 (#30772) 2022-05-21 09:47:38 +02:00
Chuck Atkins
4fbb822072
visit: Overhaul to build in the DAV SDK (#30594)
* mesa-glu and mesa-demos: Fix conflicts with glu and osmesa

* visit: Update visit dependencies

* ecp-data-vis-sdk: Enable +visit

* ci[data-vis-sdk]: Enable +visit
2022-05-20 19:17:30 -04:00
Sreenivasa Murthy Kolam
f86c481280
update checksum and url for mlirmiopen recipe (#30771) 2022-05-20 21:29:58 +00:00
Jen Herting
91a99882b3
[py-openslide-python] added verion 1.1.2 (#30722)
* [py-openslide-python] added verion 1.1.2 and set max py-setuptools version for 1.1.1

* [py-openslide-python]

- setuptools required for all possible newer versions
- python is type build run

* [py-openslide-python] use pil provider
2022-05-20 19:25:20 +00:00
Manuela Kuhn
74bef2105a
py-formatizer: add new package (#30755) 2022-05-20 10:37:55 -07:00
Manuela Kuhn
630ebb9d8b
py-pybids: add 0.8.0 and 0.15.1 (#30756) 2022-05-20 10:37:01 -07:00
iarspider
183465321e
DWZ: use virtual "elf" package (#30761) 2022-05-20 10:29:11 -07:00
Nate deVelder
580f9ec86e
Add newer openfast versions and preliminary OpenMP compile support (#30752)
* Add version 3.0 and 3.1 and prelim OpenMP support

* Fix flag handler missing spec variable

* Use self.compiler.openmp_flag instead of -fopenmp

* Fix whitespace
2022-05-20 10:27:47 -07:00
Jordan Galby
0b0920bc90
qt: Qt 5.15.0 requires OpenSSL 1.1.1 (#30754)
Fixes qt configure errors with external openssl on older systems (rhel7)

See
efc02f9cc3/dist/changes-5.15.0 (L346)

This means for now on, `qt ^openssl@1.0` gets you `qt@5.15.4 ~ssl`:
clingo chooses latest qt version **but disables ssl support**.
2022-05-20 18:24:30 +02:00
Peter Scheibel
55f4950ed4
Petsc: fix enable-x for virtuals (#30749)
* If direct dependencies provide virtuals, add those virtual names as well
* Also refer to package by virtual name for jpeg
2022-05-20 03:15:44 +00:00
Manuela Kuhn
23960ed623
py-fracridge: add new package (#30739) 2022-05-19 17:28:39 -07:00
iarspider
fb2730d87f
Update py-onnx-runtime to 1.10; update CMS patch (#30725)
* Update py-onnx-runtime to 1.10; update CMS patch

* Update package.py
2022-05-19 17:24:18 -07:00
Harmen Stoppels
b018eb041f
python: more +optimizations (#30742) 2022-05-19 12:25:36 -06:00
Matthew Archer
3f4398dd67
fenicsx: update to v0.4 (#30661)
* Fix for xtensor-xsimd

* Add sha256 for all new releases

* renamed ufcx package

* Update sha for ffcx

* fixed hashes and modified fenics-dolfinx to depend on ufcx

* cleaned and fixed dependency types

* use spec.satisfies in cmake_args

* bumped to ufcx@0.4.1

* address PR comments

* fix hashes

* update parmetis in cmake_args to reflect default setting

* update versions

* renamed ufcx package

* fixed hashes and modified fenics-dolfinx to depend on ufcx

* cleaned and fixed dependency types

* use spec.satisfies in cmake_args

* bumped to ufcx@0.4.1

* address PR comments

* fix hashes

* update parmetis in cmake_args to reflect default setting

* update versions

* Add dependency fix

* bump basix to 0.4.2 and address PR comments

* Versioning fixes

* Use xtensor-0.24: and loosen pybind11

* Add conflicts for partitioners

* Updates on partitioners

* use define_from_variant

* Tidy up some dependencies

* Work on multi-variants for graph partitioners

* Fix KaHIP issue.

KaHIP changed the name of its library from 'interface' to 'kahip'. Pin earlier versions of DOLFINx to earlier verisons of KaHIP for proper detection.

Co-authored-by: Chris Richardson <chris@bpi.cam.ac.uk>
Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk>
2022-05-19 18:22:09 +00:00
kwryankrattiger
a225a5b276
Ascent: Add variant to disable blt_find_mpi (#30735)
This is needed to find MPI correctly on cray systems and similar.
2022-05-19 10:06:31 -07:00
iarspider
c9cfc548da
Update millepede recipe (#30737) 2022-05-19 10:03:31 -07:00
Rémi Lacroix
3b30886a3a
libtheora: fix the hash of a patch. (#30740)
Cosmetic changes only, probably because gitlab.xiph.org got updated.
2022-05-19 09:59:12 -07:00
Valentin Volkl
a0fe6ab2ed
cuda: use stage dir instead of /tmp during install (#29584) 2022-05-19 17:18:18 +02:00
Harmen Stoppels
c3be777ea8
tar: add compress deps (#30641)
* remove spack dependency from package

* tar: fix compression programs, use pigz by default instead of gzip on -z
2022-05-19 11:15:13 -04:00
Tiziano Müller
f5250da611
cp2k: fix unbound var use without cuda (#30736)
fixes #30631
2022-05-19 11:38:00 +02:00
David Beckingsale
c2af154cd2
RAJA and associated packages: add v2022.03.0 (#30047)
* Add raja@2022.03.0
* Add camp@2022.03.0
* Add chai@2022.03.0
* Add umpire@2022.03.1
* Latest chai, raja, umpire versions don't need submodules
* Latest chai, raja, umpire versions update CMake option names
* New umpire +device_alloc option (for latest version)
* All versions of dray are now required to build with raja@:0.14

Co-authored-by: Marty McFadden <mcfadden8@users.noreply.github.com>
2022-05-18 22:48:22 -07:00
Teodor Nikolov
2c211d95ee
Catch2: update to 3.0.1 (#30732)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-19 00:47:20 +00:00
Asher Mancinelli
c46f673c16
ExaSGD bugfixes (#30731)
* Small bug fixes for ExaSGD packages

* Add Slaven as maint for both exago and hiop
2022-05-18 15:25:24 -07:00
Michael Kuhn
9e05dde28c
harfbuzz: add gobject-introspection dependency (#30715)
Fixes #30706
2022-05-18 15:13:36 -06:00
Jen Herting
b1ef5a75f0
[py-tensorflow-hub] applied patch for newer version of zlib (#30664)
* [py-tensorflow-hub] applied patch for newer version of zlib

* [py-tensorflow-hub] patch also applies to 0.11.0

* [py-tensorflow-hub] Audit fix

1. patch URL in package py-tensorflow-hub must end with ?full_index=1
2022-05-18 13:21:21 -07:00
Timothy Brown
f9aa7c611c
[WGRIB2] Pinning Jasper to v2. (#30726)
If we use v3 of Jasper, WGRIB2 fails to build due to not
finding `jpc_encode` and `jpc_decode`.
2022-05-18 09:34:22 -07:00
Timothy Brown
9a2e01e22d
[G2] Pinning Jasper to version 2. (#30728) 2022-05-18 09:33:05 -07:00