Commit Graph

500 Commits

Author SHA1 Message Date
Adam J. Stewart
ab50aa61db
py-keras: add v3.0.0 (#41356)
* py-keras: add v3.0.0

* Older keras actually requires protobuf

* Correct url_for_version

* Capitalization is important

* Keep pil and pydot deps
2023-12-01 18:23:58 +00:00
Tom Scogland
dd607d11d5
developer tools stack try 2 (#40921)
* developer tools stack try 2

This version is actually in use locally and has largely stabilized, at
least on x86.  Some packages are still a challenge on ppc64le, but maybe
worth keeping this working as a set.

* add packages, try to get container with newer gcc

* remove reuse: true

* try to get cmake to build on medium, 25 minutes is too long

* add lsd package and add to dev tools stack

* clean up fzf dependency and sorting

* Update share/spack/gitlab/cloud_pipelines/stacks/developer_tools/spack.yaml

* cuda: add 12.3.0 (#40827)

* Switch to dashes

* yet more underscores

---------

Co-authored-by: Paul R. C. Kent <kentpr@ornl.gov>
2023-11-30 18:32:21 +00:00
Luc Berger
450f938056
kokkos: add v4.2.00 (#41203)
* Kokkos: adding version 4.2.00 to the package
* Kokkos: adding AMD GPU arch
* kokkos@4.2.00 +sycl: patch numeric traits unit test

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2023-11-29 22:47:15 +00:00
eugeneswalker
430b2dff5c
e4s ci: disable gpu test stack (#41296) 2023-11-28 18:02:00 +01:00
Andrey Perestoronin
3d744e7c95
intel-oneapi 2024.0.0: added new version to packages (#41135)
* oneapi 2024.0.0 release

* oneapi v2 directory support and some cleanups

* sycl abi change requires 2024 compilers for packages that use sycl

---------

Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
2023-11-27 13:13:04 -05:00
eugeneswalker
2870b6002c
e4s oneapi stack: turn on +sycl: ginkgo, heffte, petsc, upcxx, warpx (#41157)
* e4s oneapi stack: turn on +sycl: ginkgo, heffte, petsc, upcxx, warpx

* comment out warpx; build fails; add note
2023-11-18 22:21:20 -08:00
Massimiliano Culpo
2ac128a3ad
Add papyrus to the list of broken tests (#40923)
* Disable papyrus in the neoverse v1 pipeline
   See https://gitlab.spack.io/spack/spack/-/jobs/8983875
   The job is hanging on tests for 6 hrs.
* Add papyrus to broken tests instead of removing it
2023-11-14 07:37:29 -08:00
eugeneswalker
383ec19a0c
Revert "Deactivate Cray sles, due to unavailable runner (#40291)" (#40910)
This reverts commit 4b06862a7f.
2023-11-09 12:24:18 -08:00
Massimiliano Culpo
afc693645a
tcl: filter compiler wrappers to avoid pointing to Spack (#40946) 2023-11-08 19:38:41 +01:00
Greg Becker
0b344e0fd3
tutorial stack: update for changes to the basics section for SC23 (#40942) 2023-11-07 23:46:57 -08:00
Harmen Stoppels
c1f134e2a0
tutorial: use lmod@8.7.18 because @8.7.19: has bugs (#40939) 2023-11-07 23:04:45 +01:00
Harmen Stoppels
3a5c1eb5f3
tutorial pipeline: force gcc@12.3.0 (#40937) 2023-11-07 20:53:44 +01:00
Massimiliano Culpo
f51dad976e
hdf5-vol-async: better specify dependency condition (#40882) 2023-11-04 20:31:52 +01:00
eugeneswalker
fd22d109a6
sundials +sycl: add cxxflags=-fsycl via flag_handler (#40845) 2023-11-04 08:55:19 -05:00
eugeneswalker
d4a1618e07
tau: update 2.33 hash, add syscall variant (#40851)
Co-authored-by: wspear <wjspear@gmail.com>
2023-11-03 07:58:00 +01:00
Harmen Stoppels
6933e1c3cb
ci: bump tutorial image and toolchain (#40795) 2023-10-31 12:58:33 +01:00
Harmen Stoppels
160bfd881d
tutorial: replace zlib -> gmake to avoid deprecated versions (#40769) 2023-10-31 10:04:53 +01:00
Harmen Stoppels
b1b8500eba
ci: print colored specs in concretization progress (#40711) 2023-10-30 15:29:27 +01:00
eugeneswalker
ed7274a4d0
e4s ci stacks: add exago specs (#40712)
* e4s ci: add exago +cuda, +rocm builds

* exago: rename 5-18-2022-snapshot to snapshot.5-18-2022

* disable exago +rocm for non-external rocm ci install

* note that hiop +rocm fails to find hip libraries when they are spack-installed
2023-10-27 11:15:11 -07:00
Harmen Stoppels
51275df0b1
ci: spack compiler find should list extra config scopes (#40727)
otherwise it detected pre-configured compilers in an potentially different way.
2023-10-27 09:43:01 +02:00
Harmen Stoppels
c0a4be156c
ci: don't put compilers in config (#40700)
* ci: don't register detectable compilers

Cause they go out of sync...

* remove intel compiler, it can be detected too

* Do not run spack compiler find since compilers are registered in concretize job already

* trilinos: work around +stokhos +cuda +superlu-dist bug due to EMPTY macro
2023-10-25 11:55:04 -07:00
Harmen Stoppels
0c30418732
ci: darwin aarch64 use apple-clang-15 tag (#40706) 2023-10-25 17:35:47 +02:00
Vicente Bolea
d0982115b3
Adios2: add kokkos variant (#40623)
* adios2: update variants and dependencies

* adios2: add kokkos rocm|cuda|sycl variant

* e4s oneapi ci stack: add adios2 +sycl

* e4s ci stack: add adios2 +rocm

* [@spackbot] updating style on behalf of vicentebolea

* Apply suggestions from code review

* adios2: fixed cuda variant

* update ecp-data-vis-sdk

* Update share/spack/gitlab/cloud_pipelines/stacks/e4s-power/spack.yaml

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
Co-authored-by: vicentebolea <vicentebolea@users.noreply.github.com>
2023-10-23 13:01:57 -07:00
Harmen Stoppels
27a0425e5d
concretize separately: show concretization time per spec as they concretize when verbose (#40634) 2023-10-20 17:09:19 +02:00
Harmen Stoppels
4bade7ef96
gromacs +cp2k: build in CI (#40494)
* gromacs +cp2k: build in CI

* libxsmm: x86 only

* attempt to fix dbcsr + new mpich

* use c11 standard

* gromacs: does not depend on dbcsr

* cp2k: build with cmake in CI, s.t. dbcsr is a separate package

* cp2k: cmake patches for config files and C/C++ std

* cp2k: remove unnecessary constraints due to patch
2023-10-20 16:20:20 +02:00
Scott Wittenburg
46c1a8e4c6
gitlab ci: Rework how mirrors are configured (#39939)
Improve how mirrors are used in gitlab ci, where we have until now thought
of them as only a string.

By configuring ci mirrors ahead of time using the proposed mirror templates,
and by taking advantage of the expressiveness that spack now has for mirrors,
this PR will allow us to easily switch the protocol/url we use for fetching
binary dependencies.

This change also deprecates some gitlab functionality and marks it for
removal in Spack 0.23:

    - arguments to "spack ci generate":
        * --buildcache-destination
        * --copy-to
    - gitlab configuration options:
        * enable-artifacts-buildcache
        * temporary-storage-url-prefix
2023-10-19 11:04:59 -05:00
Harmen Stoppels
681639985a
ci: remove incorrect compilers.yaml (#40610) 2023-10-19 16:11:42 +02:00
eugeneswalker
37df8bfc73
e4s arm stack: duplicate and target neoverse v1 (#40369)
* e4s arm stack: duplicate and target both neoverse n1, v1

* remove neoverse_n1 target until issue #40397 is resolved
2023-10-10 14:32:51 -07:00
Massimiliano Culpo
e20c05fcdf
Make "minimal" the default duplicate strategy (#39621)
* Allow branching out of the "generic build" unification set

For cases like the one in https://github.com/spack/spack/pull/39661
we need to relax rules on unification sets.

The issue is that, right now, nodes in the "generic build" unification
set are unified together with their build dependencies. This was done
out of caution to avoid the risk of circular dependencies, which would
ultimately cause a very slow solve.

For build-tools like Cython, however, the build dependencies is masked
by a long chain of "build, run" dependencies that belong in the
"generic build" unification space.

To allow splitting on cases like this, we relax the rule disallowing
branching out of the "generic build" unification set.

* Fix issue with pure build virtual dependencies

Pure build virtual dependencies were not accounted properly in the
list of possible virtuals. This caused some facts connecting virtuals
to the corresponding providers to not be emitted, and in the end
lead to unsat problems.

* Fixed a few issues in packages

py-gevent: restore dependency on py-cython@3
jsoncpp: fix typo in build dependency
ecp-data-vis-sdk: update spack.yaml and cmake recipe
py-statsmodels: add v0.13.5

* Make dependency on "blt" of type "build"
2023-10-06 10:24:21 +02:00
eugeneswalker
e0e6ff5a68
Revert "cray rhel: disable due to runner issues (#40324)" (#40335)
This reverts commit bf7f54449b.
2023-10-05 10:32:52 -07:00
Harmen Stoppels
bf7f54449b
cray rhel: disable due to runner issues (#40324) 2023-10-05 08:45:33 +02:00
Scott Wittenburg
7bf6780de2
ci: pull E4S images from github instead of dockerhub (#40307) 2023-10-04 09:55:06 +02:00
eugeneswalker
91178d40f3
e4s arm: disable bricks due to target=aarch64 not being respected (#40308) 2023-10-04 09:51:14 +02:00
eugeneswalker
8746c75db0
e4s ci stacks: sync with e4s-23.08 (#40263)
* e4s amd64 gcc ci stack: sync with e4s-23.08

* e4s amd64 oneapi ci stack: sync with e4s-23.08

* e4s ppc64 gcc ci stack: sync with e4s-23.08

* add new ci stack: e4s amd64 gcc w/ external rocm

* add new ci stack: e4s arm gcc ci

* updates

* py-scipy: -fvisibility issue is resolved in 2023.1.0: #39464

* paraview oneapi fails

* comment out pkgs that fail to build on power

* fix arm stack name

* fix cabana +cuda specification

* comment out failing spces

* visit fails build on arm

* comment out slepc arm builds due to make issue

* comment out failing dealii arm builds
2023-10-03 08:12:51 -07:00
Massimiliano Culpo
4b06862a7f
Deactivate Cray sles, due to unavailable runner (#40291)
This reverts commit 0274091204.
2023-10-03 11:06:36 +02:00
G-Ragghianti
1b75651af6
Implemented +sycl for slate (#39927)
* Implemented +sycl for slate

* style

* style

* add slate +sycl to ci

* slate +sycl: explicitly specify +mpi

* comment out slate+sycl+mpi in e4s oneapi stack

* removing requirement of intel-oneapi-mpi

* Added slate+sycl to e4s oneapi stack

* Removing obsolete comment

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-10-02 07:35:00 -07:00
eugeneswalker
2d509dc3eb
py-scipy: -fvisibility issue is resolved in 2023.1.0: (#39464)
* py-scipy: -fvisibility issue is resolved in 2023.1.0:

* e4s oneapi ci: add py-scipy
2023-10-01 17:29:21 +00:00
eugeneswalker
68dbd25f5f
e4s cray sles ci: expand spec list (#40162)
* e4s cray sles stack: expand spec list

* remove unnecessary packages:trilinos:one_of
2023-09-30 21:32:33 -07:00
eugeneswalker
08a9345fcc
e4s ci: add packages: drishti, dxt-explorer (#39597)
* e4s ci: add packages: drishti, dxt-explorer

* e4s oneapi ci: comment out dxt-explorer until r%oneapi issue #40257 is resolved
2023-09-30 06:15:58 +09:00
eugeneswalker
0274091204
Revert "e4s cray sles: suspend ci until machine issues resolved (#40219)" (#40238)
This reverts commit 5165524ca6.
2023-09-29 07:25:50 +02:00
eugeneswalker
5165524ca6
e4s cray sles: suspend ci until machine issues resolved (#40219) 2023-09-27 04:51:34 +02:00
eugeneswalker
95b737d923
trilinos +shylu: patch to resolve trilinos issue #12048 (#40169)
* trilinos +shylu: patch to resolve trilinos issue #12048

* e4s ci: build xyce ^trilinos+shylu

---------

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2023-09-24 16:28:03 +09:00
eugeneswalker
daf95227bf
e4s cray rhel stack: expand to full spec list (#40111)
* e4s cray rhel stack: expand to full spec list

* comment out gasnet; require %gcc for unzip

* require openblas@0.3.20 to get around %cce error; follow up with issue report

* comment out failing specs;

* comment out axom and xyce due to errors

* improve clarity of failing specs
2023-09-22 16:04:20 +00:00
eugeneswalker
2755706115
Revert "e4s-cray: drop in ci as there are no runners (#40122)" (#40144)
This reverts commit bd8d0324a9.
2023-09-21 22:38:26 -06:00
Harmen Stoppels
501d322264
e4s: drop python 3.8 preference (#40123) 2023-09-21 15:07:21 +02:00
Harmen Stoppels
bd8d0324a9
e4s-cray: drop in ci as there are no runners (#40122) 2023-09-21 09:54:06 +00:00
Harmen Stoppels
c57e2140c2
ci: dont use nightly image tag (#40070) 2023-09-19 17:53:28 +02:00
Harmen Stoppels
7d33c36a30
ci: drop redundant packages.yaml (#40068) 2023-09-19 11:47:48 +02:00
eugeneswalker
3045ed0e43
Revert "gitlab ci: temporarily disable darwin aarch64 (#39974)" (#40052)
This reverts commit 2c13361b09.
2023-09-18 12:48:32 -06:00
Scott Wittenburg
cbabdf283c
gitlab ci: submit the correct audience for protected publish jobs (#40046) 2023-09-15 20:09:18 +00:00
Scott Wittenburg
579df768ca
gitlab ci: Put Cray binaries in public mirrors (#39938) 2023-09-14 15:11:29 -06:00
Dan LaManna
6a249944f5
Add OIDC tokens to gitlab-ci jobs (#39813)
* Add OIDC tokens to gitlab-ci jobs

This should allow us to start issuing just-in-time generated
credentials for CI jobs that need to modify binary mirrors. The "aud"
claim of the token describes what the token is allowed to do. The
claim is verified against a set of rules on the IAM role using signed
information from GitLab. See spack-infrastructure for the claim
verification logic.

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2023-09-14 09:59:25 -06:00
Massimiliano Culpo
d50f296d4f
data-vis-sdk: make llvm~libomptarget the default (#40007)
Currently the configuration of the pipeline is such that
there are multiple "optimal" solutions. This is due to
the pipeline making ~lld the default for LLVM, but leaving
+libomptarget from package.py

Since LLVM recipe has a:

conflicts("~lld", "+libomptarget")

clingo is forced to change one of the two defaults, and
the penalty for doing so is the same for each. Hence, it
is random whether we'll get +libomptarget+lld
or ~libomptarget~lld.

This fixes it by changing also the default for libomptarget.
2023-09-14 09:19:47 +02:00
Harmen Stoppels
2c13361b09
gitlab ci: temporarily disable darwin aarch64 (#39974)
as there are no or few runners available
2023-09-13 11:11:33 +02:00
Scott Wittenburg
fa9acb6a98
ci: Tag reindex job to match the image architecture (#39958) 2023-09-12 16:33:56 -04:00
Tamara Dahlgren
c10ff27600
CI/Add superlu-dist to broken stand-alone tests due to hang (#38908)
* Add superlu-dist to broken stand-alone CI tests
* Revert "disable superlu test (#38894)"
  This reverts commit e16397b5d8.
2023-09-12 11:09:25 -07:00
Scott Wittenburg
516f0461b8
gitlab ci: Use image with awscli for rebuild-index job (#39636)
Instead of pointing to the image on DockerHub, which rate limits us and
causes pipeline failures durying busy times, use the version at ghcr.

And we might as well use the ghcr version everywhere else too.
2023-09-11 18:03:11 +02:00
kwryankrattiger
8ec1657136
CI Timing Statistics (#38598)
* Write timing information for installs from cache

* CI: aggregate and upload install_times.json to artifacts

* CI: Don't change root directory for artifact generation

* Flat event based timer variation

Event based timer allows for easily starting and stopping timers without
wiping sub-timer data. It also requires less branching logic when
tracking time.

The json output is non-hierarchical in this version and hierarchy is
less rigidly enforced between starting and stopping.

* Add and write timers for top level install

* Update completion

* remove unused subtimer api

* Fix unit tests

* Suppress timing summary option

* Save timers summaries to user_data artifacts

* Remove completion from fish

* Move spack python to script section

* Write timer correctly for non-cache installs

* Re-add hash to timer file

* Fish completion updates

* Fix null timer yield value

* fix type hints

* Remove timer-summary-file option

* Add "." in front of non-package timer name

---------

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-09-07 15:41:31 -05:00
Harmen Stoppels
d80bc70481
gitlab: set cache and config dir in top-level file (#39829) 2023-09-06 08:16:35 +02:00
Harmen Stoppels
5a43f4ba55
Set backtrace in ci (#39737) 2023-09-05 09:44:14 +02:00
Harmen Stoppels
acb02326aa
ASP-based solver: add hidden mode to ignore versions that are moving targets, use that in CI (#39611)
Setting the undocumented variable SPACK_CONCRETIZER_REQUIRE_CHECKSUM
now causes the solver to avoid accounting for versions that are not checksummed.

This feature is used in CI to avoid spurious concretization against e.g. develop branches.
2023-08-31 08:09:37 +00:00
kwryankrattiger
cef59ad0bf
Patch VTK to enable python 3.8 in VTK 8.2 (#38735)
* VTK: Add patch for python 3.8 support

* CI: Re-enable VisIt in CI

* Configure spec matrix for stack with VisIt

* Add pugixml dep for 8.2.0

* Make VTK and ParaView consistent on proj dep

* OpenMPI 3: provides MP support by default

* Add details on proj dep in ParaView

* Add python 3.8 to test mock repo

* Patches to get VisIt VTK interface

* CI: Disable VisIt with GUI in DAV
2023-08-28 16:56:31 -05:00
Harmen Stoppels
8a3d98b632
Remove mxnet from darwin aarch64 since theres no supported release (#39644) 2023-08-28 12:21:10 +02:00
eugeneswalker
4c7748e954
amrex+sycl: restructure constraint on %oneapi (#39451) 2023-08-16 11:49:32 -06:00
Massimiliano Culpo
9bb5cffc73 Change semantic for providers
If a possible provider is not used to satisfy a vdep,
then it's not a provider of that vdep.
2023-08-15 15:54:37 -07:00
Massimiliano Culpo
3f3c75e56a ecp-data-viz-sdk: fix building with new encoding 2023-08-15 15:54:37 -07:00
Massimiliano Culpo
9733bb3da8 We cannot require "mpich" as an mpi provider and ask for openmpi 2023-08-15 15:54:37 -07:00
eugeneswalker
ed3aaafd73
e4s cray sles ci: expand spec list (#39081)
* e4s cray sles ci: expand spec list

* flux-core: disable until python+gary-sles issue is resolved
2023-08-11 23:42:10 +00:00
Cristian Di Pietrantonio
09ca71dbe0
kokkos: rename 'std' variant to 'cxxstd'. (#39319)
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-11 07:18:02 +00:00
Axel Huebl
7d444038ee
AMReX: 23.06+ Multi-Dim Support (#37695)
* AMReX: 23.06+ Multi-Dim Support

This updated the Spack package to allow to install AMReX, modules of
AMReX in E4S deployments and dependent packages with support for
multiple dimensions. Due to an upstream change in AMReX, we do not
longer need to ship three, binary incompatible package variants.

* [E4S] oneAPI AMReX < 23.06 Variant

Work-around the auto-concretization to the multi-dim of `dimensions`,
which only in 23.06+ became a multi-variant.

* e4s cray rhel ci: temporarily disable amrex build until spurious ci failure can be resolved

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-08-09 11:25:43 -07:00
eugeneswalker
5d70c0f100
e4s ci: add libpressio (#34222)
* e4s ci: add libpressio

* libpressio ~cuda, +cuda: add +mgard
2023-08-08 12:03:23 -07:00
Adam J. Stewart
7327d2913a
ML CI: get more packages working on macOS (#39199) 2023-08-08 10:59:24 +02:00
kwryankrattiger
b54d286b4a
CI: remove redundant sections (#38514)
Refactor gitlab ci configs so that mac and cray jobs can reuse as much higher level
configuration as possible.

* CI: remove redundant sections
* CI: Include base linux CI configs in cray stacks

Relocation and runner mapping is consistent between cray and linux runners.

* Export user cache path in before script
* CI: add GPG root for mac runners
* Disable user configs

Metal runners share a ~ directory

* Disable user config and add configs in activate env
2023-08-07 10:23:16 -06:00
Scott Wittenburg
2c74b433aa
ci: Make signing requirement explicit (#38995)
Instead of inferring whether to sign binaries, make it explicit,
and fail rebuild jobs early if signing is required but cannot be
accomplished.
2023-07-26 09:16:15 -06:00
Scott Wittenburg
12d86ffb6a
ci: fix stack mirror urls (#38882) 2023-07-24 20:20:08 +00:00
eugeneswalker
366c798b87
e4s oneapi ci: build with latest 2023.2 based image (#39048) 2023-07-22 09:22:02 -07:00
eugeneswalker
4edeabb2a2
e4s ci: add cray-sles ministack (#38744)
* e4s ci: add cray-sles ministack

* fix typo: variables, not env
2023-07-21 05:57:27 -07:00
eugeneswalker
515b53ac50
e4s cray: expand spec list (#38947)
* e4s cray: expand spec list

* unzip: require %gcc

* remove datatrasnferkit
2023-07-18 20:04:26 +00:00
Harmen Stoppels
f30ede1ab8
ci: remove aws-ahug (#38777) 2023-07-14 10:49:57 -05:00
Harmen Stoppels
3828ae2a52
ci: populate caches in before script (#38762)
* ci: run spack list in power ci

Let's see if Spack itself is the bottleneck in CI...

* rebuild curl in CI

* more of the same please!

* drop the profiler

* undo rebuildme test in ci variant

* add comment for posterity

* enable profiling

* trigger CI

* See how it goes now that perf regressions are fixed on develop

* try shorter poll intervals

* Revert "try shorter poll intervals"

This reverts commit d60c34ad3eceead0c13a5277cf8e783fd42b7458.

* Remove spec.format call in Database._get_matching_spec_key

* once more in ci please

* undo irrelevant changes

* run spack list in before script

* test in ci

* -:

* Undo CI testing
2023-07-12 18:12:22 -05:00
Harmen Stoppels
eef14ddcad
openssl: prefer 3.x (#36729)
* openssl: prefer 3.x

This PR is not intended to be merged immediately, but it would be good
to see what packages fail to build in CI so that we can get proper
version constraints on openssl (before all packages update and support
both openssl 1 and 3)

* Disable assembly for 3.x %oneapi

* cmake: depend on spack curl, to deal with curl - openssl compat

* also make zlib external

* remove overly strict & unsafe requirement on py-cryptographty patch version number

* update openssl compat bounds in py-cryptography

* smaller diff

* Make libssh2 an autotools/cmake package

* fix weird upperbound in libssh2 as there is not openssl v2

* libssh2: pc file lists plain -lssl -lcrypto w/o leading -L flag, confusing libgit2 parsing of pkg-config output

* Actually fix the issue in libssh2: its pc file looks broken
2023-07-09 17:48:00 -04:00
Harmen Stoppels
a13687f022
Disable fortran in openblas for darwin ci, fix variant default value (#38752) 2023-07-06 17:47:20 +02:00
Harmen Stoppels
d35149d174
remove another Python 3.7 requirement & preference, since it was deprecated (#38710) 2023-07-04 20:33:47 +02:00
Stephen Sachs
a0b2ca2dde
Temporarily disable aws-pcluster pipelines (#38708) 2023-07-04 11:27:01 +02:00
Harmen Stoppels
ba7ae2c153
Drop requirement of python@3.7 since it's deprecated (#38692) 2023-07-03 16:15:32 +02:00
kwryankrattiger
b980fcff64
CI: Disable building VisIt in CI (#38642)
VisIt requires a deprecated version of Python (3.7) due to a VTK 8
dependency. Spack CI does not support building deprecated versions.
2023-06-29 17:33:40 -05:00
eugeneswalker
95fffe16a8
e4s ci: add hdf5-vol-daos (#37887)
* e4s ci: add hdf5-vol-daos

* hdf5-vol-daos: comment with failure notes
2023-06-28 08:31:59 -07:00
Luc Berger
41582f76bd
Kokkos Kernels: adding release 3.7.1 and 4.0.0 (#36655)
Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
2023-06-27 08:33:29 -07:00
Stephen Sachs
0c6d0541f0
Fix syntax to set default target in aws-pcluster pipelines (#38048)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-06-24 15:25:19 +02:00
Axel Huebl
d1bc4c4ef1
WarpX 23.06 (#38303)
* WarpX 23.06

Update WarpX and related Python packages to the lastest releases.

WarpX 23.06 introduces multi-dimension support in a single package,
which will ease deployment in E4S et al. that can ship now a single,
full-feature module/package that is NOT incompatible with itself
anymore.

* e4s ci stacks: multiple specs for each dim variant no longer required

* [@spackbot] updating style on behalf of ax3l

* WarpX: Update CMake CLI and Test/Check

* Add Missing `build-directory`

* [@spackbot] updating style on behalf of ax3l

* Remove `build_directory` again

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
Co-authored-by: ax3l <ax3l@users.noreply.github.com>
2023-06-16 06:47:59 -07:00
Massimiliano Culpo
d5747a61e7
Hotfix to avoid building compilers from sources in pcluster pipelines (#38256)
The pcluster image has am internal buildcache without an index.

Also, we need to force reuse to avoid rebuilding GCC, since the default is 
to only reuse dependencies - and that is subject to changes in the GCC 
recipe.
2023-06-09 07:56:28 +02:00
eugeneswalker
cea1b3123e
e4s oneapi ci: use official intel oneapi-derived runner image (#38176)
* e4s oneapi ci: use official intel oneapi-derived runner image

* update oneapi image

* tau builds ok, but only with libdrm - comment out for now, follow up with pr later
2023-06-08 09:17:22 -07:00
eugeneswalker
5f1bc15e80
E4S Cray CI Stack (#37837)
* e4s cray ci stack

* e4s ci: add cray

* add zen4 tag

* WIP: new defintions just for cray

* updates

* remove ci signing job overrride, not necessary

* echo $PATH and show modules loaded

* add mirror

* add external def for cray-libsci

* comment out quantum-espresso

* use /etc/protected-runner as key path

* cray ci stack: do not remove tags: [spack, public]

* make cray stack composable

* generate job should run on public tagged runner, override default config:install_tree:root

* CI: Use relative path in default script

* CI: Use relative includes paths for shell runners

* Use concrete_env_dir for relpath

* ml-darwin-aarch64-mps: jax has bazel codesign issue

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-06-06 18:41:32 -07:00
Sergey Kosukhin
7d5d075809
llvm: optionally build compiler-rt, libcxx and libunwind as runtimes (#32476)
* llvm: replace +omp_as_runtime with omp=runtime

* llvm: fetch 'libomp-libflags-as-list.patch' from upstream repo

* llvm: replace 'llvm14-hwloc-ompd.patch' with the official fix from upstream repo

* llvm: fix-up for the black reformatting

* llvm: fetch 'constexpr_longdouble.patch' from upstream repo

* llvm: optionally build libcxx as a runtime

* llvm: fetch 'llvm5-sanitizer-ustat.patch' from upstream repo

* llvm: update 'sanitizer-ipc_perm_mode.patch'

* llvm: refactor compiler conflicts when libcxx=project

* llvm: fetch 'llvm_python_path.patch' from upstream repo

* llvm: update comments and condition for 'xray_buffer_queue-cstddef.patch'

* llvm: optionally build compiler-rt as a runtime

* llvm: fetch 'lldb_external_ncurses-10.patch' from upstream repo

* llvm: fetch 'llvm_py37.patch' from upstream repo

* llvm: rename variant 'internal_unwind' to 'libunwind'

* llvm: optionally build libunwind as a runtime

* llvm: extend the list of maintainers

* llvm: allow for explicit '~clang~flang~libomptarget~lldb~omp_debug~z3'

* llvm: fetch 'llvm5-lld-ELF-Symbols.patch' from FreeBSD port repo

* llvm: fetch most of 'missing-includes.patch' from upstream repo and reuse 'llvm-gcc11.patch'

* llvm: regroup patches for missing include directives and drop compiler constraints for them

* llvm: fetch 'llvm-gcc11.patch' from upstream repo

* llvm: fetch 'no_cyclades.patch' from upstream repo

* llvm: update comments and condition for 'no_cyclades9.patch'

* llvm: rename variant 'omp' to 'openmp'

* llvm: constrain and rename variant 'omp_tsan' to 'libomp_tsan'

* llvm: rename variant 'omp_debug' to 'libomptarget_debug'

* llvm: do not apply same patch twice

* llvm: constrain and document the '*-thread.patch' patches

* llvm: document the '~lld+libomptarget' conflict

* llvm: update comments for the 'D133513.diff' patch
2023-06-03 23:08:10 -05:00
eugeneswalker
1c7af83d32
update ci ml darwin keypath (#37927) 2023-05-25 16:27:56 -07:00
Adam J. Stewart
2f8cea2792
Add macOS ML CI stacks (#36586)
* Add macOS ML CI stacks

* torchmeta is no longer maintained and requires ancient PyTorch

* Add MXNet

* update darwin aarch64 stacks

* add darwin-aarch64 scoped config.yaml

* remove unnecessary cleanup job

* fix specifications

* fix labels

* fix labels

* fix indent on tags specification

* no tags for trigger jobs

* try overriding tags in stack spack.yaml

* do not use CI_STACK_CONFIG_SCOPES

* incorporate config:install_tree:root: overrides and compiler defs

* copy relevant ci-scoped config settings directly into stack spack.yaml

* remove build-job-remove

* spack ci generate: add debug flag

* include cdash config directly in stack spack.yaml

* customize build-job script section to avoid absolute paths

* add any-job specification

* tags: use aarch64-macos instead of aarch64

* generate tags: use aarch64-macos instead of aarch64

* do not add morepadding

* use shared mirror; comment out known failures

* remove any-job

* nproc || true

* comment out specs failing due to bazel from cache codesign issue

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-05-25 01:12:54 -04:00
Stephen Sachs
2d77e44f6f
Pcluster local buildcache (#37852)
* [pcluster pipeline] Use local buildcache instead of upstream spack

Spack currently does not relocate compiler references from upstream spack
installations. When using a buildcache we don't need an upstream spack.

* gcc needs to be installed via postinstall to get correct deps

* quantum-espresso@gcc@12.3.0 returns ICE on neoverse_{n,v}1

* Force gitlab to pull the new container

* Revert "Force gitlab to pull the new container"

This reverts commit 3af5f4cd88.

Seems the gitlab version does not yet support "pull_policy" in .gitlab-ci.yml

* Gitlab keeps picking up wrong container. Renaming

* Update containers once more after failed build
2023-05-24 06:55:00 -07:00
eugeneswalker
c62080d498
e4s ci: add dealii (#32484) 2023-05-23 21:34:31 +02:00
Stephen Sachs
125c20bc06
Add aws-plcuster[-aarch64] stacks (#37627)
Add aws-plcuster[-aarch64] stacks.  These stacks build packages defined in
https://github.com/spack/spack-configs/tree/main/AWS/parallelcluster

They use a custom container from https://github.com/spack/gitlab-runners which
includes necessary ParallelCluster software to link and build as well as an
upstream spack installation with current GCC and dependencies.

Intel and ARM software is installed and used during the build stage but removed
from the buildcache before the signing stage.

Files `configs/linux/{arch}/ci.yaml` select the necessary providers in order to
build for specific architectures (icelake, skylake, neoverse_{n,v}1).
2023-05-17 16:21:10 -06:00
kwryankrattiger
4627438373
CI: Expand E4S ROCm stack to include missing DaV packages (#36843)
* CI: Expand E4S ROCm stack to include missing DaV packages

Ascent: Fixup for VTK-m with Kokkos backend

* DaV SDK: Removed duplicated openmp variant for ascent

* Drop visit and add conflict for Kokkos

* E4S: Drop ascent from CUDA builds
2023-05-16 09:34:52 -05:00
Peter Scheibel
7bc5b26c52
Requirements and preferences should not define (non-git) versions (#37687)
Ensure that requirements `packages:*:require:@x` and preferences `packages:*:version:[x]`
fail concretization when no version defined in the package satisfies `x`. This always holds
except for git versions -- they are defined on the fly.
2023-05-16 15:45:11 +02:00
Scott Wittenburg
a184bfc1a6
gitlab ci: reduce job name length of build_systems pipeline (#37686) 2023-05-16 00:26:37 +02:00
Harmen Stoppels
6a47339bf8
oneapi: before script load modules (#37678) 2023-05-15 18:39:58 +02:00
eugeneswalker
91c5b4aeb0
e4s ci stacks: add: hdf5-vol-{log,cache} (#37651) 2023-05-13 04:54:44 +00:00
Scott Wittenburg
c08be95d5e
gitlab ci: release fixes and improvements (#37601)
* gitlab ci: release fixes and improvements

  - use rules to reduce boilerplate in .gitlab-ci.yml
  - support copy-only pipeline jobs
  - make pipelines for release branches rebuild everything
  - make pipelines for protected tags copy-only

* gitlab ci: remove url changes used in testing

* gitlab ci: tag mirrors need public key

Make sure that mirrors associated with release branches and tags
contain the public key needed to verify the signed binaries.  This
also ensures that when stack-specific mirror contents are copied
to the root, the root mirror has the public key as well.

* review: be more specific about tags, curl flags

* Make the check in ci.yaml consistent with the .gitlab-ci.yml

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-05-12 15:22:42 -05:00
eugeneswalker
47ec6a6ae5
e4s ci: trilinos +rocm: enable belos to fix build failure (#37617) 2023-05-11 14:02:20 -07:00
Harmen Stoppels
2c17c4e632
ci: remove --mirror-url flag (#37457)
The flags --mirror-name / --mirror-url / --directory were deprecated in 
favor of just passing a positional name, url or directory, and letting spack
figure it out.

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2023-05-10 16:34:29 -06:00
eugeneswalker
3446feff70
use latest trilinos for +cuda variants (#37164) 2023-05-08 12:29:54 -07:00
Harmen Stoppels
e17d6d5eee
gitlab ci: bump tutorial image (#37544) 2023-05-07 16:24:33 +02:00
Harmen Stoppels
ddea33bdc0
Update tutorial pipeline to Ubuntu 22.04 (#35451) 2023-05-05 17:52:07 +02:00
Harmen Stoppels
803425780e
ci: stop downloading recent gmake (#37458) 2023-05-05 17:09:56 +02:00
eugeneswalker
75bf6d665c
e4s ci: add xyce (#36841)
* e4s ci: add xyce

* relax trilinos contraints for xyce

* also relax trilinos constraint for e4s-power stack

* allow trilinos~shylu for xyce
2023-04-24 16:32:01 -07:00
eugeneswalker
c76023d7ac
e4s ci: add mgard (#36584) 2023-04-24 23:35:40 +02:00
Adam J. Stewart
b5d66e0144
MXNet: add v1.9 (#36590) 2023-04-24 11:13:09 -05:00
Adam J. Stewart
05215e016b
ML CI: fix mirror name (#37007) 2023-04-20 16:45:15 -07:00
kwryankrattiger
9745865250
DaV SDK: Enable ParaView raytracing with in SDK (#36844)
* DaV SDK: Enable ParaView raytracing with in SDK

* CI: Drop swr testing from Data Vis SDK

* ISPC: extend LLVM requirement to main

* DaV SDK: Disallow concretizing develop unifyfs

No longer needed after mochi-margo patch
2023-04-18 13:39:47 -05:00
Adam J. Stewart
036695ac94
CI: update Linux images in ML pipelines (#36766)
Add missing openssl/curl/pkgconfig deps to py-tokenizers

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-04-17 17:42:03 +02:00
Scott Wittenburg
bfa94c5781
gitlab ci: Better tagging of "service" jobs (#36846)
- Tag non-rebuild jobs to target a cheaper (and more highly available)
subset of runners.

- Add missing resource requests to these jobs as well.
2023-04-14 09:03:12 -06:00
eugeneswalker
a9db5620f5
remove x86_64_v3 tags (#36828) 2023-04-13 15:29:15 -05:00
kwryankrattiger
b940468890
CI: Update Data Vis SDK image (#36761)
Supersedes #34224
2023-04-13 09:54:42 -05:00
eugeneswalker
a88fdb216f
ci: gpu-tests stack: swap x86_64-{cuda,rocm} for x86_64 (#36759) 2023-04-10 17:01:18 -07:00
kwryankrattiger
b2310f9e64
Ci backwards compat (#36045)
* CI: Fixup docs for bootstrap.

* CI: Add compatibility shim

* Add an update method for CI

Update requires manually renaming section to `ci`. After
this patch, updating and using the deprecated `gitlab-ci` section
should be possible.

* Fix typos in generate warnings

* Fixup CI schema validation

* Add unit tests for legacy CI

* Add deprecated CI stack for continuous testing

* Allow updating gitlab-ci section directly with env update

* Make warning give good advice for updating gitlab-ci

* Fix typo in CI name

* Remove white space

* Remove unneeded component of deprected-ci
2023-04-10 16:46:45 -05:00
kwryankrattiger
4ace1e660a
Ecp hdf5 vol (#35195)
* ECP-SDK: enable hdf5 VOL adapters
- When +hdf5, enable VOL adapters suitable for the SDK.
- Each VOL package must prepend to the HDF5_PLUGIN_PATH.
- hdf5: 1.13.3 will break existing VOL packages, constrain
  VOLs related to SDK and add note to keep 1.13.2 available.
- hdf5-vol-async:
    - Do not set HDF5_VOL_CONNECTOR, consumers must opt-in.
    - Enforce DAG constraints on MPI to require threaded version.
    - Depend on an explicit version of argbots to relax
      concretization issues in other spack environments.
- paraview: fix compiler flag usage for the 110 ABI (followup to #33617).
* ECP Data and ViS: Add constraits for HDF5 VOLS
* CI: HDF5 1.14 builds without VisIt
* hdf5-vol-async: Update docs string

---------

Co-authored-by: Stephen McDowell <stephen.mcdowell@kitware.com>
2023-04-06 15:21:11 -07:00
Scott Wittenburg
08426ec492
gitlab ci: request more memory for publish job (#36560) 2023-03-31 00:19:59 +02:00
Harmen Stoppels
dba57ff113
ci: require x86_64_v3 everywhere (#36158) 2023-03-29 15:58:48 +02:00
eugeneswalker
c88b30b426
e4s power ci: ecp-data-vis-sdk: disable visit due to build issues (#36475) 2023-03-28 06:02:47 -04:00
Adam J. Stewart
a84fb716a0
Update the PyTorch ecosystem (#36132)
* py-pytorch-lightning: add v2.0.0

* py-lightning-utilities: add v0.8.0

* Update all PyTorch packages

* Open-CE does not yet have patches for PyTorch 2 on ppc64le
2023-03-17 10:13:44 +01:00
kwryankrattiger
bb73dfc02e
Hotfix: CI: Add CI target for gpu-test stack (#36136) 2023-03-15 21:13:02 -04:00
Harmen Stoppels
1691b7caac
Fix typo affecting Gitlab CI (#36103)
Introduced in #35944
2023-03-14 14:18:05 +01:00
Harmen Stoppels
2107b6bf00
Set build_jobs dynamically in CI to avoid oversubscription (#35996)
Co-authored-by: Zack Galbreath <zack.galbreath@kitware.com>
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-03-13 08:29:58 +01:00
Harmen Stoppels
844701b974
get --dev and drop set -x (#36010) 2023-03-10 22:59:57 -08:00
Harmen Stoppels
08d7f47278
curl flag is not universally supported (#36009) 2023-03-10 16:20:32 -08:00
Harmen Stoppels
26fd1ac5b0
hotfix: fix double double quotes (#36005) 2023-03-10 13:41:01 -08:00
Zack Galbreath
e1301df60c
ci: version bump for ghcr.io/spack/e4s-amazonlinux-2 (#35976)
* ci: version bump for ghcr.io/spack/e4s-amazonlinux-2

This new image comes with GnuPG v2.4.0

* py-cython: upperbounds for Python versions

* fix py-gevent nonsense

---------

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-03-10 13:32:11 -08:00
kwryankrattiger
f3595da600
CI boilerplate reduction (#34272)
* CI configuration boilerplate reduction and refactor

Configuration:
- New notation for list concatenation (prepend/append)
- New notation for string concatenation (prepend/append)
- Break out configuration files for: ci.yaml, cdash.yaml, view.yaml
- Spack CI section refactored to improve self-consistency and
composability
  - Scripts are now lists of lists and/or lists of strings
  - Job attributes are now listed under precedence ordered list that are
  composed/merged using Spack config merge rules.
  - "service-jobs" are identified explicitly rather than as a batch

CI:
- Consolidate common, platform, and architecture configurations for all CI stacks into composable configuration files
- Make padding consistent across all stacks (256)
- Merge all package -> runner mappings to be consistent across all
stacks

Unit Test:
- Refactor CI module unit-tests for refactor configuration

Docs:
- Add docs for new notations in configuration.rst
- Rewrite docs on CI pipelines to be consistent with refactored CI
workflow

* Script verbose environ, dev bootstrap

* Port #35409
2023-03-10 12:25:35 -07:00
Scott Wittenburg
16c67ff9b4
ci: Increase the amount of pruning possible for PR pipelines (#35944)
By setting the traversal depth to 1, only specs matching the changed
package and direct dependents of those (and of course all dependencies
of that set) are removed from pruning candidacy.
2023-03-10 11:19:52 -08:00
kwryankrattiger
895886959f
CI: Fix timeout for VisIt and ParaView (#35787)
ref. #35400
2023-03-03 09:13:14 +01:00
Massimiliano Culpo
07e251c887
Remove handling of deprecated target names (graviton) (#35537)
* Update target names for Gitlab pipelines

* Remove handling of deprecated names for graviton
2023-03-01 11:03:12 +01:00
eugeneswalker
34441c9eaa
ci: gpu test stack: turn off cuda@11.7 builds (#35467) 2023-02-13 21:54:01 -08:00
eugeneswalker
f7de22eb14
gpu test stack: add test w/ ^cuda@12 builds on A100 w/ newer driver (#35375)
* gpu test stack: test cuda@12 builds on A100 w/ newer driver

* get gpu info via nvidia-smi;

* kokkos+cuda^cuda@12 has genuine failure
2023-02-09 12:18:03 -07:00
eugeneswalker
f6fa64f979
ci: add minimal gpu testing stack (#35251)
* ci: add minimal gpu testing stack

* kokkos +cuda requires +wrapper...

* require pass

* add raja+cuda
2023-02-03 18:33:34 -08:00
eugeneswalker
99f3716346
e4s: add and prefer boost +python +filesystem +iostreams +system (#35180) 2023-01-30 07:37:35 -08:00
eugeneswalker
48a63719b2
e4s oneapi: use oneapi@2023.0.0 (#34634) 2023-01-29 13:22:14 -08:00
eugeneswalker
9f5d9266e6
e4s: add power stack (#32710)
* e4s: restore builds builds

* gitlab ci: allow UO to build protected binaries for signing

* use newer image; comment out failing builds

* gitlab-ci: Some tweaks for e4s power builds

- fix tags (no longer require generate jobs to run on aws)
- fix resource requests for generation jobs resource requests
- remove SPACK_SIGNING_KEY from protected power build jobs
- update UO signing key path
- change the CDash build group to reflect stack name
- retry pipeline generation jobs *always*

* correct double packages: section

* gitlab-ci:script: modernize

* remove new gnu make, not for ppc64le

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2023-01-29 10:53:02 -06:00
eugeneswalker
a82fe2010f
e4s: add cusz +cuda (#35004) 2023-01-23 09:15:39 -08:00
Zack Galbreath
91fd6d5a84
Allocate more memory for generate jobs in all stacks (#35040)
* Allocate more memory for generate jobs in all stacks
* Add a 60 minute timeout on generate jobs
2023-01-20 11:06:49 -07:00
eugeneswalker
6713f7feda
e4s: ecp-data-vis-sdk +rocm: remove redundant amdgpu_target specification (#35022) 2023-01-20 00:18:41 +00:00
eugeneswalker
fed4eb2526
e4s ci: clean up unnecessary constraints (#35006) 2023-01-18 21:23:15 -08:00
eugeneswalker
1bf1c7de76
e4s: add sz3 (#35007) 2023-01-18 22:21:30 -06:00
eugeneswalker
ae5408de9a
e4s ci: add veloc (#35003) 2023-01-18 16:48:23 -08:00
eugeneswalker
8eb803ab4c
e4s: add py-h5py ~mpi variant (#34998) 2023-01-18 19:28:47 +00:00
eugeneswalker
886ea7c490
e4s: add py-h5py (#34914) 2023-01-16 15:52:24 +00:00
eugeneswalker
b9a16a599a
e4s ci: py-libensemble: activate variants (#34915) 2023-01-16 10:57:28 +01:00
kwryankrattiger
229ee7cad9
Paraview rocm (#34790)
* paraview: add `rocm` variant

This conflicts with CUDA and requires at least ParaView 5.11.0. More
dependencies are also needed.

* E4S: Add ParaView for ROCm and CUDA stacks

* DAV SDK: Update ParaView version and GPU variants

* Verify using hipcc vs amdclang++ for newer hip

Co-authored-by: Ben Boeckel <ben.boeckel@kitware.com>
2023-01-13 12:41:57 -06:00
Mike VanDenburgh
ea6608edde
Bump memory requests for e4s/ml generate jobs (#34648) 2023-01-11 10:41:42 -07:00
eugeneswalker
9d70f6e6c7
protected runner jobs at uo: trust e4s-uo signing key (#34828) 2023-01-10 18:18:38 -07:00
Scott Wittenburg
8f6f77ac9f
gitlab ci: fix tags for pipeline generation jobs (#34789)
Gitlab does not merge lists when a job extends two other definitions
that include the same list (e.g. tags).  Also, it merges dictionaries
as long as the keys are distinct, but just takes the last mentioned
value when there are key collisions.

This change makes sure that when different tags are needed by a
pipeline, the ones we want are actually provided.  It also changes
the example stack to better follow this pattern so we do not lead
developers astray in the future.
2023-01-10 10:06:26 -07:00
Wileam Y. Phan
0f7f600d1f
Add CUDA 12.0 (#34664) 2023-01-10 11:51:23 +01:00
eugeneswalker
9283a94ee4
e4s ci: use 2023-01-01 runner image (#34827) 2023-01-10 10:47:28 +00:00
Harmen Stoppels
b9f48da560
e4s: move default values for rocm/cuda arch into packags:all:variants (#34772) 2023-01-04 16:09:14 +01:00
Adam J. Stewart
eb67497020
ML CI: Linux x86_64 (#34299)
* ML CI: Linux x86_64

* Update comments

* Rename again

* Rename comments

* Update to match other arches

* No compiler

* Compiler was wrong anyway

* Faster TF
2022-12-22 11:31:40 -06:00
eugeneswalker
7e836b925d
e4s: disable mac stack due to binary relocation issue#32571 (#34560) 2022-12-17 10:53:15 +00:00
Zack Galbreath
aa8e1ba606
gitlab ci: more resources for slow builds (#34505) 2022-12-15 14:35:54 -07:00
Scott Wittenburg
675afd884d
gitlab ci: more resources for paraview and py-torch (#34412) 2022-12-09 11:58:37 -07:00
Andrew W Elble
588d2e295f
py-alphafold: update to 2.2.4, update dependencies (#33876)
* py-alphafold: update to 2.2.4, update dependencies

* style
2022-12-02 22:12:06 +00:00
eugeneswalker
f452741e3d
e4s ci: use 2022-12-01 runner images (#34212) 2022-11-30 09:52:30 -08:00
eugeneswalker
99b68e646d
e4s ci: hpx: set max_cpu_count=512 (#33977) 2022-11-30 09:16:57 -08:00
kwryankrattiger
33422acef0
CI: Update Data and Vis SDK Stack (#34009)
* CI: Update Data and Vis SDK Stack

* Update image to match target deployments (E4S)
* Enable all packages
* Test supported variants of ParaView and VisIt

* Sensei: Update Python hint for newer cmake

* Sensei: add Python3 hint
2022-11-29 14:49:55 -07:00
eugeneswalker
587488882a
e4s ci: add hdf5-vol-async; remove expired comments (#34110) 2022-11-28 19:35:42 +00:00
kwryankrattiger
5d2c9636ff
E4S: Conservatively add ecp-data-vis-sdk (#33621)
* E4S: Conservatively add ecp-data-vis-sdk

* Remove ascent from CUDA SDK stack to stop hanging on Dray

* Adios2: Newer FindPython uses Python_EXECUTABLE
2022-11-23 11:01:30 -08:00
Harmen Stoppels
90fb16033e
gitlab: report load in generate job (#33888) 2022-11-15 13:21:21 +01:00
Harmen Stoppels
f332ac6d21
More jobs in Gitlab CI (#33688)
Use at most 32 jobs when available.
2022-11-08 12:53:11 +01:00
Adam J. Stewart
0f32f7d0e9
py-transformers: add v4.24.0 (#33716)
* py-transformers: add v4.24.0

* Internet access still required
2022-11-05 12:38:49 -05:00
Massimiliano Culpo
ace8c74e20
Revert "gitlab: when_possible -> false (#33443)" (#33552)
This reverts commit b1559cc831.
2022-10-31 13:31:57 -07:00
eugeneswalker
999c460b1e
e4s ci: add mfem +rocm (#31604) 2022-10-29 23:32:46 +00:00
Harmen Stoppels
fa0432c521
gitlab ci: patched make 4.3.0 (#33583) 2022-10-28 14:38:57 +02:00
Harmen Stoppels
df1d233573
Don't fail over cpuinfo (#33546) 2022-10-27 11:14:09 +02:00
Harmen Stoppels
34f9394732
gitlab ci: show build machine info (#33523) 2022-10-26 20:31:16 +02:00
Massimiliano Culpo
30c9ff50dd
Allow for packages with multiple build-systems (#30738)
This commit extends the DSL that can be used in packages
to allow declaring that a package uses different build-systems
under different conditions.

It requires each spec to have a `build_system` single valued
variant. The variant can be used in many context to query, manipulate
or select the build system associated with a concrete spec.

The knowledge to build a package has been moved out of the
PackageBase hierarchy, into a new Builder hierarchy. Customization
of the default behavior for a given builder can be obtained by
coding a new derived builder in package.py.

The "run_after" and "run_before" decorators are now applied to
methods on the builder. They can also incorporate a "when="
argument to specify that a method is run only when certain
conditions apply.

For packages that do not define their own builder, forwarding logic
is added between the builder and package (methods not found in one
will be retrieved from the other); this PR is expected to be fully
backwards compatible with unmodified packages that use a single
build system.
2022-10-26 20:17:32 +02:00
Harmen Stoppels
a2520e80c0
gitlab ci: install binary deps faster (#33248)
* Fast Gitlab CI job setup, and better legibility

* Use a non-broken, recent GNU Make
2022-10-26 09:19:24 +02:00
Harmen Stoppels
d361378553
Improve legibility of Gitlab CI (#33482)
Use --backtrace in ci instead of --debug to reduce verbosity
and don't show log on error, since log is already printed
2022-10-25 12:21:34 +02:00
eugeneswalker
baa21d664b
e4s ci: use an appropriate name for cdash build group name (#33494) 2022-10-24 16:15:01 -07:00
eugeneswalker
a51bd80a5e
e4s ci: add chai +rocm (#32506) 2022-10-24 18:16:56 +02:00
Zack Galbreath
6d3869a7d3
Remove x86_64_v4 target from AHUG and ISC stacks (#33464) 2022-10-22 08:53:07 +00:00
Harmen Stoppels
669bbe1e66
stop building binaries for the 1% (#33463) 2022-10-22 02:01:50 -06:00
Scott Wittenburg
27921c38ce
gitlab: Retry protected publish jobs in certain cases (#32496)
When we lose a running pod (possibly loss of spot instance) or encounter
some other infrastructure-related failure of this job, we need to retry
it.  This retries the job the maximum number of times in those cases.
2022-10-21 10:35:20 -06:00
Harmen Stoppels
b1559cc831
gitlab: when_possible -> false (#33443)
`reuse` and `when_possible` concretization broke the invariant that
`spec[pkg_name]` has unique keys. This invariant is relied on in tons of
places, such as when setting up the build environment.

When using `when_possible` concretization, one may end up with two or
more `perl`s or `python`s among the transitive deps of a spec, because
concretization does not consider build-only deps of reusable specs.

Until the code base is fixed not to rely on this broken property of
`__getitem__`, we should disable reuse in CI.
2022-10-21 14:42:06 +02:00
eugeneswalker
1e4732d5fe
e4s ci: add raja +rocm (#32505) 2022-10-20 14:26:18 -07:00
eugeneswalker
8aac0d09d4
e4s ci: add umpire +rocm (#32504) 2022-10-19 17:05:45 -06:00
eugeneswalker
dd003f66a8
e4s ci stack: add trilinos +rocm (#31601) 2022-10-17 21:04:31 +00:00
Jonathon Anderson
10491e98a8
CI: allow multiple matches to combine tags (#32290)
Currently "spack ci generate" chooses the first matching entry in
gitlab-ci:mappings to fill attributes for a generated build-job,
requiring that the entire configuration matrix is listed out
explicitly. This unfortunately causes significant problems in
environments with large configuration spaces, for example the
environment in #31598 (spack.yaml) supports 5 operating systems,
3 architectures and 130 packages with explicit size requirements,
resulting in 1300 lines of configuration YAML.

This patch adds a configuraiton option to the gitlab-ci schema called
"match_behavior"; when it is set to "merge", all matching entries
are applied in order to the final build-job, allowing a few entries
to cover an entire matrix of configurations.

The default for "match_behavior" is "first", which behaves as before
this commit (only the runner attributes of the first match are used).

In addition, match entries may now include a "remove-attributes"
configuration, which allows matches to remove tags that have been
aggregated by prior matches. This only makes sense to use with
"match_behavior:merge". You can combine "runner-attributes" with
"remove-attributes" to effectively override prior tags.
2022-10-15 17:29:53 +00:00
eugeneswalker
a587bff119
e4s ci: add cabana +rocm (#33177) 2022-10-11 00:37:55 -06:00
eugeneswalker
dc141f5ad6
e4s: add hypre +rocm (#32148) 2022-10-10 16:09:52 -06:00
Adam J. Stewart
831d7979ca
ML CPU pipeline: test py-torch-nvidia-apex (#33158) 2022-10-10 12:18:05 -06:00
Adam J. Stewart
01ede3c595
Add CI stack for ML packages (#31592)
Basic stack of ML packages we would like to test and generate binaries for in CI. 

Spack now has a large CI framework in GitLab for PR testing and public binary generation.
We should take advantage of this to test and distribute optimized binaries for popular ML
frameworks.

This is a pretty extensive initial set, including CPU, ROCm, and CUDA versions of a core
`x96_64_v4` stack.

### Core ML frameworks

These are all popular core ML frameworks already available in Spack.

- [x] PyTorch
- [x] TensorFlow
- [x] Scikit-learn
- [x] MXNet
- [x] CNTK
- [x] Caffe
- [x] Chainer
- [x] XGBoost
- [x] Theano

### ML extensions

These are domain libraries and wrappers that build on top of core ML libraries

- [x] Keras
- [x] TensorBoard
- [x] torchvision
- [x] torchtext
- [x] torchaudio
- [x] TorchGeo
- [x] PyTorch Lightning
- [x] torchmetrics
- [x] GPyTorch
- [x] Horovod

### ML-adjacent libraries

These are libraries that aren't specific to ML but are still core libraries used in ML pipelines

- [x] numpy
- [x] scipy
- [x] pandas
- [x] ONNX
- [x] bazel

Co-authored-by: Jonathon Anderson <17242663+blue42u@users.noreply.github.com>
2022-10-09 15:39:47 -07:00
eugeneswalker
dfbeaff8ae
remove outdated comments (#33123) 2022-10-07 19:47:57 -07:00
eugeneswalker
01e7b89b53
e4s ci: add variorum (#33113) 2022-10-07 14:52:30 -07:00
eugeneswalker
041c1486f8
e4s ci: add h5bench (#33114) 2022-10-07 14:52:08 -07:00
eugeneswalker
35bc158387
e4s ci: add quantum-espresso (#33075) 2022-10-07 08:38:10 -07:00
eugeneswalker
a56cd8ffb6
e4s ci: add charliecloud (#32990) 2022-10-06 12:22:23 +02:00