zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
33,139 Commits 246 Branches 186 Tags
1d6a14260821a25c2e063f5ca561cdedaff01e68
Commit Graph

33139 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
dependabot[bot]
976cb02f78 build(deps): bump docker/setup-qemu-action from 2.2.0 to 3.0.0 (#39968) 
Bumps [docker/setup-qemu-action](https://github.com/docker/setup-qemu-action) from 2.2.0 to 3.0.0.
- [Release notes](https://github.com/docker/setup-qemu-action/releases)
- [Commits](2b82ce82d5...68827325e0)

---
updated-dependencies:
- dependency-name: docker/setup-qemu-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-18 18:22:58 +02:00
dependabot[bot]
f1bdc74789 build(deps): bump docker/build-push-action from 4.2.1 to 5.0.0 (#39969) 
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 4.2.1 to 5.0.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](0a97817b6a...0565240e2d)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-18 18:22:41 +02:00
Lydéric Debusschère
920347c21a py-werkzeug: Add version 0.12.2 required by py-graphene-tornado @2.6.1 (#39984) 2023-09-18 11:21:22 -05:00
Ben Cowan
c00ece6cf2 Enabled building GCC 13.1 on darwin/aarch64. (#38667) 2023-09-18 18:20:19 +02:00
Juan Miguel Carceller
7b0157c7e7 python: Don't prefer 3.10 (#40036) 2023-09-18 10:08:49 -06:00
Lydéric Debusschère
1b3a2ba06a [add] py-ldap3: new recipe, required by py-metomi-rose (#39982) 2023-09-18 11:06:23 -05:00
Manuela Kuhn
dc22a80f86 py-traits: add 6.4.2 (#39976) 2023-09-18 10:57:47 -05:00
Manuela Kuhn
27d6a75692 py-trove-classifiers: add 2023.8.7 (#39977) 2023-09-18 10:50:55 -05:00
George Young
70456ce4a7 py-rseqc: add 5.0.1 (#39953) 
* py-rseqec: add 5.0.1

* Update package.py

* style ...

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-18 10:49:58 -05:00
Lydéric Debusschère
078369ec2b [chore] py-aniso8601: Add version 7.0.0 (#39808) 
* [chore] py-aniso8601: Add version 3.0.2 required by py-graphene

* py-aniso8601: Add version 7.0.0 and constraints on python version

* py-aniso8601: fix style

* [fix] py-aniso8601: remove version 3.0.2 which depends on removed version of python; set the minimal version of python to 3.7

* py-aniso8601: remove version constraint on python
 2023-09-18 10:46:30 -05:00
Diego Alvarez S
da8e022f6b Nextflow: add 22.04.3 (#40034) 2023-09-18 17:39:27 +02:00
George Young
c8a3f1a8ae chexmix: new package (#38441) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-18 17:36:44 +02:00
Michael Kuhn
be3f7b5da3 checksum: use FIXME instead of FIX ME when adding versions (#40050) 
The former is highlighted by editors, while the latter is not.
 2023-09-18 17:31:11 +02:00
Martin Aumüller
68d7ce3bb6 coin3d: apply upstream patches to fix build on Centos 8 (#39839) 
fixes undefined references to dlerror, dlopen, dlsym, dlclose and
XDefaultScreenOfDisplay, XScreenNumberOfScreen, XCreatePixmap, XFree, XFreePixmap, XCloseDisplay, XOpenDisplay
 2023-09-18 17:16:56 +02:00
Rémi Lacroix
7a490e95b6 Julia: Fix sha256 for some LLVM patches (#40041) 2023-09-18 10:52:00 +02:00
Joscha Legewie
088e4c6b64 grass: Update spec for gdal dependency (#38396) develop-2023-09-17 2023-09-15 21:36:46 -05:00
Caetano Melone
76816d722a CI: add spec to job vars (#39905) 
* CI: add details about built spec to ci job variables

Co-authored-by: Alec Scott <alec@bcs.sh>
Co-authored-by: Alec Scott <hi@alecbcs.com>
 2023-09-15 14:40:00 -06:00
Scott Wittenburg
cbabdf283c gitlab ci: submit the correct audience for protected publish jobs (#40046) 2023-09-15 20:09:18 +00:00
John W. Parent
060bc01273 Windows RPATHing: fix symlink error (#39933) 
With 349ba83, you cannot symlink() if the link already exists.
Update the simulated RPATHing logic on Windows to account for that.
 2023-09-15 12:55:18 -07:00
Harmen Stoppels
0280ac51ed linux-headers: drop rsync dep, add new version (#39867) 2023-09-15 17:23:29 +02:00
David Gardner
bd442fea40 update sha256 after new tarball uploads (#40030) 2023-09-15 17:20:37 +02:00
Massimiliano Culpo
fb9e5fcc4f Group primitive url/path handling functions together (#40028) 2023-09-15 15:43:23 +02:00
Jack Morrison
bc02453f6d Sandia OpenSHMEM: Update to include version 1.5.2 (#40025) 2023-09-15 08:38:47 -04:00
dependabot[bot]
74a6c48d96 build(deps): bump sphinx from 7.2.5 to 7.2.6 in /lib/spack/docs (#40029) 
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.5 to 7.2.6.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.5...v7.2.6)

---
updated-dependencies:
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-15 09:51:51 +02:00
Alex Richert
854f169ded Add shared and pic variants to libxml2 (#38094) 2023-09-14 19:57:52 -07:00
Adam Grofe
94c2043b28 Add Scine QCMaquis recipe to builtin packages (#39709) 
* Add Scine QCMaquis recipe to builtin packages
* Format scine-qcmaquis recipe using black
* Remove import os from scine-qcmaquis recipe
* Reduce length of symmetries line in scine-qcmaquis
* Add myself as a maintainer of the scine-qcmaquis recipe
* Update Scine-QCMaquis recipe following the review
  PR URL: https://github.com/spack/spack/pull/39709
  Changes:
  - Updated Symmetries variant to us multi feature
  - Added dependency to boost+chrono since it was undocumented
  - Use define_from_variant to setup CMake args
  - Make version 3.1.2 be preferred since 3.1.3 build is broken
* Change build_tests boolean condition

---------

Co-authored-by: Adam Grofe <adamgrofe@microsoft.com>
 2023-09-14 17:57:42 -04:00
Scott Wittenburg
579df768ca gitlab ci: Put Cray binaries in public mirrors (#39938) 2023-09-14 15:11:29 -06:00
George Young
e004db8f77 meme: add 5.5.4, correct dependencies (#40014) 
* meme: add 5.5.4, correct dependencies
* variant renaming

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-14 13:52:40 -05:00
George Young
2d1cca2839 gffread: new package @0.12.7 (#40015) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-14 13:34:22 -04:00
Alex Richert
8dae369a69 Set # of ninja procs to 'make_jobs' for scipy (#293) (#38831) 2023-09-14 13:08:59 -04:00
Alex Richert
0d76436780 Add pic option & maintainer to lz4 (#38095) 
Co-authored-by: Greg Becker <becker33@llnl.gov>
 2023-09-14 09:50:11 -07:00
Massimiliano Culpo
34402beeb7 Ensure PythonExtension is consistent when finding externals (#40012) 
PythonExtension is a base class for PythonPackage, and
is meant to be used for any package that is a Python
extension but is not built using "python_pip".

The "update_external_dependency" method in the base
class calls another method that is defined in the derived
class.

Push "get_external_python_for_prefix" up in the hierarchy
to make method calls consistent.
 2023-09-14 18:26:40 +02:00
Dan LaManna
6a249944f5 Add OIDC tokens to gitlab-ci jobs (#39813) 
* Add OIDC tokens to gitlab-ci jobs

This should allow us to start issuing just-in-time generated
credentials for CI jobs that need to modify binary mirrors. The "aud"
claim of the token describes what the token is allowed to do. The
claim is verified against a set of rules on the IAM role using signed
information from GitLab. See spack-infrastructure for the claim
verification logic.

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
 2023-09-14 09:59:25 -06:00
Harmen Stoppels
6838ee6bb8 Add efficient deptype flag and spack.deptypes module (#39472) 
This commit replaces the internal representation of deptypes with `int`, which is more compact
and faster to operate with.

Double loops like:
```
any(x in ys for x in xs)
```
are replaced by constant operations bool(xs & ys), where xs and ys are dependency types. 

Global constants are exposed for convenience in `spack.deptypes`
 2023-09-14 12:25:24 +02:00
Massimiliano Culpo
d50f296d4f data-vis-sdk: make llvm~libomptarget the default (#40007) 
Currently the configuration of the pipeline is such that
there are multiple "optimal" solutions. This is due to
the pipeline making ~lld the default for LLVM, but leaving
+libomptarget from package.py

Since LLVM recipe has a:

conflicts("~lld", "+libomptarget")

clingo is forced to change one of the two defaults, and
the penalty for doing so is the same for each. Hence, it
is random whether we'll get +libomptarget+lld
or ~libomptarget~lld.

This fixes it by changing also the default for libomptarget.
 2023-09-14 09:19:47 +02:00
Alex Richert
e5d227e73d Support static case for find_libraries() in xz (#38100) 
* Update xz

* add maintainer to xz

* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
 2023-09-13 22:34:11 -04:00
Alex Richert
af7b4c5a2f Add pic variant for libpng (#37964) 2023-09-13 20:43:10 -04:00
Alex Richert
75e9742d71 Allow git to compile against static curl (#37960) 2023-09-13 16:03:06 -07:00
Billae
e2f2559a5a add trompeloeil package (#39944) 
* add trompeloeil package
* remove maintainer as he wish not to be
* fix style
 2023-09-13 16:02:24 -07:00
Alex Richert
cac7f9774a Add static-only option for udunits (#38099) 
* Add static-only option for udunits

* add maintainer to udunits
 2023-09-13 15:58:55 -07:00
Alex Richert
6c4f8e62ae Add libs property/find_libraries to libiconv (#37962) 2023-09-13 15:52:30 -07:00
Alex Richert
cb03db3d69 Add pic and shared variants to GSL (#37961) 
* Add pic and shared variants for gsl

* fix gsl variant logic

* make +pic default for gsl
 2023-09-13 15:49:32 -07:00
Alex Richert
372bbb43a8 ip recipe updates (#39997) 2023-09-13 15:41:45 -07:00
Alex Richert
7b763faa1c Add develop version to g2tmpl (#39994) 
* Add develop version to g2tmpl
* Update package.py
 2023-09-13 15:39:42 -07:00
Alex Richert
4a79857b5e Add develop version for gfsio (#39995) 
* Add develop version for gfsio
* Update package.py
 2023-09-13 15:38:13 -07:00
Alex Richert
61df3b9080 Add develop version to landsfcutil (#39998) 2023-09-13 15:36:43 -07:00
Alex Richert
0b134aa711 Add two versions to ncio recipe (#39999) 2023-09-13 15:35:29 -07:00
Alex Richert
ea71477a9d Add develop version for nemsio (#40000) 2023-09-13 15:32:32 -07:00
Alex Richert
bc26848cee Add develop version to nemsiogfs (#40001) 2023-09-13 15:31:19 -07:00
Alex Richert
3e50ee70be Add develop version to sfcio (#40002) 
* Add develop version to sfcio
* Update package.py
 2023-09-13 15:30:14 -07:00