Commit Graph

22074 Commits

Author SHA1 Message Date
Tiziano Müller
724325f789 molden: adding the package (#19626) 2020-10-30 14:35:24 -05:00
Teodor Nikolov
fef20524f9 clingo: compilation error - needs a patch (#19624)
* Add a patch to clingo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-30 11:36:53 -07:00
Adam J. Stewart
3d7e8ff399 PyTorch: add v1.7.0 (#19555) 2020-10-30 12:42:15 -05:00
Adam J. Stewart
cb877e2a28 py-pillow-simd: add older version (#19500) 2020-10-30 12:23:12 -05:00
Adam J. Stewart
be14679719 GDAL: add new version (#19504) 2020-10-30 12:22:53 -05:00
Adam J. Stewart
bea65aacda py-torchvision: add v0.8.0 (#19556)
* py-torchvision: add v0.8.0

* py-torchvision: add v0.8.1
2020-10-30 12:22:38 -05:00
Adam J. Stewart
bfab98d41e oneDNN: add v1.6.5 (#19557) 2020-10-30 12:22:07 -05:00
Adam J. Stewart
9dd2ddb7db py-numpy: add v1.19.3 (#19593) 2020-10-30 12:21:52 -05:00
Seth R. Johnson
f6189031b9 ninja: support spack find external (#19616) 2020-10-30 11:53:30 -05:00
manifest
fc1d39dedc gemini dep cyordereddict + (#19333)
* gemini dep py-cyordereddict +

* dep ipyparallel +

* py-ipython-cluster +

* py-cyordereddict URL+dep fix

* Update var/spack/repos/builtin/packages/py-cyordereddict/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-ipython-cluster-helper dep fix

* py-ipyparallel dep fix

* ipython-cluster-helper debug

* ipython-cluster-helper debug

* ipyparallel dep fix

* ipython-cluster-helper dep fix

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-30 11:43:03 -05:00
ajaust
e4851d1a89 New package: py-pyprecice (#19558)
* added initial version of package and patch for precice-bindings

* updated package name

* cleanup in script; added version requirement to cython

* Remove unnecessary part of patch

* cleanup package

* added initial version of package and patch for precice-bindings

* updated package name

* cleanup in script; added version requirement to cython

* Remove unnecessary part of patch

* cleanup package

* update style of package

* reformatting to fullfil style requirements

* reformatting again

* fixing some of the issues mention in PR; working on fixing install stage

* readded py-wheel as dependency

Co-authored-by: Benjamin Rüth <benjamin.rueth@tum.de>
2020-10-30 11:39:59 -05:00
Chuck Atkins
aaa1afe9ec mesa: Retire older autotools mesa as mesa18 and create current meson mesa (#19528) 2020-10-30 11:16:17 -04:00
Morten Kristensen
6a381940ae py-vermin: added v1.0.0 (#19618) 2020-10-30 10:26:56 +01:00
t-nojiri
11ea2be74a openfoam-org: added v8.0 (#19622)
openfoam:  fixed build on aarch64
2020-10-30 10:19:40 +01:00
Michael Kuhn
aa14a0aec7 graphviz: fix implicit patch (#19621)
The patch seems to be included in version 2.44.1 already. Moreover, it
is necessary to specify `level=0` to make it apply.
2020-10-30 10:16:40 +01:00
Peter Scheibel
3a863020f0 CI: disable vermin check for deprecated hash (#19612)
Spack has a fallback for hash checking with m55sums that may not be
supported in earlier versions of Python 3.x. The comments in the
Spack code acknowledge that this is best effort and may fail, but
recent vermin checks (running as part of our CI) reject this. This
disables vermin checks for that fallback.
2020-10-29 22:23:36 -07:00
t-nojiri
52379d87fe caliper: Fix for aarch64 (#19564) 2020-10-29 22:01:05 -05:00
Chris Chambreau
ebe1c6badd mpip: add v3.5 release (#19559)
* Update for mpip-3.5 release

* Additional changes to support 3.5 and 3.4.1 releases

* Specify python deptype
2020-10-29 16:56:54 -07:00
Frank Willmore
c954d50998 Oneapi add compiler (#19330)
* enable flatcc to be built with gcc/9.X.X

* add static option for building libyogrt

* cleanup

* Initial working version

* rework new oneapi wrappers

* tested and removed my initials from source

* cleanup

* Update __init__.py

* remove whitespace

* working now with mods for testing, detection. Detection for oneapi is working, but entry needs to be modified to add link path for libimf.so. Cleared cruft for old Intel versions

* fixed some formatting

* cleanup

* flake8 cleanup

* flake8

* fixed syntax of compiler version detection tests

* fixed syntax of compiler version detection tests

	modified:   detection.py

* fix typo

* fixes for compilers tests

* remove erroneous tests for outdated -std= flags, remove ifx version check (output won't parse)

Co-authored-by: Frank Willmore <willmore@anl.gov>
2020-10-29 16:52:54 -05:00
Jean-Paul Pelteret
52959528a2 Suite-sparse: Fix Darwin install name (#19507) 2020-10-29 15:29:39 -05:00
Geoffrey Oxberry
af057e0196 yapf: add version 0.30.0 (#19598) 2020-10-29 14:14:55 -05:00
Ben Corbett
305d8d9b1b Adds a package for LvArray (#19221)
* RAJA and CHAI changes.

* Added LvArray package.
2020-10-29 13:52:10 -05:00
David Beckingsale
e2a720930a Patch CMake version check in Umpire (#19590)
* Patch CMake version check in Umpire

* Update version constraint for cmake_version_check patch

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add maintainers to Umpire

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-29 11:32:56 -07:00
Jen Herting
518124c14a [py-torch-nvidia-apex] added version 201019 and added dependency on p… (#19548)
* [py-torch-nvidia-apex] added version 201019 and added dependency on py-pybind11

* [py-torch-nvidia-apex] changed versioning format

* [py-torch-nvidia-apex] removed redundent version condition

* [py-torch-nvidia-apex] removed condition on dependency
2020-10-29 11:20:18 -05:00
Jen Herting
0fc79293c6 New package: py-cupy (#19468)
* [py-cupy] created template

* [py-cupy] added dependencies

* [py-cupy] switched to git based download for submodules

* [py-cupy] added dependencies

* [py-cupy] added homepage and description. removed fixmes

* [py-cupy] updated to tarball from pypi
2020-10-29 11:17:14 -05:00
h-denpo
c2e6610948 plplot:fix: add: depends_on('libsm', type='link') (#19594) 2020-10-29 11:10:57 -05:00
Rémi Lacroix
a4a64e1fbd Gromacs: Remove a dependency that could never be enabled. (#19599)
The `fft` variant was removed but not the associated dependency.
2020-10-29 11:08:13 -05:00
Greg Becker
71cb46afde clingo+python extends python (#19585) 2020-10-29 10:38:17 -05:00
AMD Toolchain Support
09b63ae3d1 Adding AOCC support for M4 (#19572)
* Adding AOCC support for M4

* combining 4 if-statements into a single if-statement with or conditions

* keeping parentheses around the or expressions

* fixing flake8 test failures

Co-authored-by: mohan babu <mohbabul@amd.com>
2020-10-29 10:13:30 -05:00
G-Ragghianti
0bed9a1990 SLATE package: New versions of slate, blaspp, and lapackpp with CMake build support (#19587)
* New versions of slate, blaspp, and lapackpp with CMake build support

* Fixing formatting
2020-10-29 10:13:02 -05:00
t-nojiri
ad87eece17 launchmon: Fix for aarch64 (#19562) 2020-10-28 21:11:36 -05:00
Seth R. Johnson
ef9c80de23 qt: Silence build and force xmlpatterns library on for Qt4 (#19591)
For some mysterious reason Qt4 stopped building the xmlpatterns
component, needed by some downstream packages. With this patch, the
component successfully builds with
```
qt@4.8.7~dbus~debug~examples~framework~gtk~opengl~phonon+shared~sql~ssl~tools~webkit freetype=none arch=linux-rhel7-haswell %gcc@10.2.0
```
2020-10-28 20:47:16 -05:00
manifest
f7269ffd0a pest suit + (#19458)
* pestpp +

* build -f default
2020-10-28 20:46:04 -05:00
manifest
b4a0a43d98 PopLDdecay package + (#17802)
* poplddecay bio

* flake8 debug

* bin PATH correction

* build step opt

* BUILD_PATH fix

* retro implementation + style fix
2020-10-28 20:45:24 -05:00
manifest
3243e904a8 Pbbam debug (#17803)
* pbbam path fix

* pbbam flake8 fix

* sys var build_directory sub

* pbbam flake8 fix
2020-10-28 20:44:38 -05:00
Todd Gamblin
aebf20ebdc sbang: vendor sbang
`sbang` now lives at https://github.com/spack/sbang, and it has its own
test suite that's more extensive than what's in Spack. We'll leave sbang
tests to sbang from now on, and just vendor `bin/sbang` directly.
Remaining `sbang` tests have to do with patching files, not with
`sbang`'s functionality.

This update also fixes a bug with `sbang` and multiple command line
arguments that was introduced in #19529. See:
  * https://github.com/spack/sbang/pull/1
  * https://github.com/spack/sbang/pull/2

- [x] include latest `sbang` from https://github.com/spack/sbang
- [x] remove old `sbang` tests from Spack
- [x] update `COPYRIGHT` and `cmd/license.py`
2020-10-28 17:43:23 -07:00
David Beckingsale
44bacefb27 RAJA package: Don't set both CUDA_ARCH and CMAKE_CUDA_FLAGS (#19589) 2020-10-28 16:54:23 -07:00
dunatotatos
f028079564 Update strelka (#19565)
* Update package.py

Remove breaking patch.

Patching the shebang is useless is the dependencies are properly loaded before execution. Furthermore, the long paths which can be generated when installing with Spack can exceed the maximum length of the shebang.

* Add newer versions of strelka.
2020-10-28 10:58:30 -05:00
dunatotatos
1dd7370885 Remove unused dependency. (#19566)
Boost is not used to build Manta.
2020-10-28 10:57:19 -05:00
Toyohisa Kameyama
f320a650d8 py-mmcv: fix Opencv detection. (#19567) 2020-10-28 10:56:52 -05:00
Roberto Di Remigio
98a1771590 Do not build XCFun tests (#19568) 2020-10-28 10:56:11 -05:00
Roberto Di Remigio
f4b63db78f Do not build MRCPP tests (#19569) 2020-10-28 10:55:46 -05:00
Roberto Di Remigio
85e6334d6f Add new package: mrchem (#19571) 2020-10-28 10:55:19 -05:00
Dr. Christian Tacke
674fb16828 openssl: Add version 1.1.1h (#19574) 2020-10-28 10:53:33 -05:00
Pieter Ghysels
9b809e01b4 Add new minor version 1.2.1 for ButterflyPACK (#19554) 2020-10-27 20:28:24 -05:00
lorddavidiii
6a5d399f55 asciidoc-py3 add docbook dependency and fix a enviroment variable problem for docbook-{xml,xsl} (#19547)
* asciidoc-py3: add docbook-{xml,xsl} dependency

* docbook-{xsl,xml}: fix XML_CATALOG_FILES enviroment variable
2020-10-27 20:11:37 -05:00
Jen Herting
79b0eab2af New package: libcudf (#19110)
* [libcudf] created template

* [libcudf] depends on cuda

* [libcudf] set cmake dir

* [libcudf] depends on boost

* [libcudf] depends on py-pyarrow

* [libcudf] depends on librmm

* [libcudf] depends on dlpack

* [libcudf] added more dependency information from https://github.com/rapidsai/libcudf/blob/v0.15.0/CONTRIBUTING.md#customizing-the-build

* [libcudf] removed python dependencies

* [libcudf] fixed url that got mangled in package renaming

* [libcudf] added default build options from build.sh

* [libcudf] added version 0.16.0a

* [libcudf] removed version 0.16.0a as it's an alpha version

* [libcudf] added homepage and description. removed fixmes

* [libcudf] flake8

* [libcudf] arrow requires +orc

* [libcudf] requires +parquet

* [libcudf] checksum changed
2020-10-27 20:11:06 -05:00
Jen Herting
7bd5397aca New Package: py-rmm (#19104)
* [py-rmm] created template

* [py-rmm] added dependencies

* [py-rmm] setting build_directory

* [py-rmm] added dependencies cuda and spdlog

* [py-rmm] added homepage and description. removed fixmes

* [py-rmm] added for loop for dependency versions

* [py-rmm] flake8

* [py-rmm] updating upper range of python version

* [py-rmm] removing python upper limit
2020-10-27 20:10:40 -05:00
t-nojiri
429f49a1e4 bowtie2: Add version 2.4.2 (#19537) 2020-10-27 20:09:05 -05:00
Todd Gamblin
965ccb78cf sbang: use bashcov in sbang on Linux 2020-10-27 13:59:46 -07:00