Commit Graph

20 Commits

Author SHA1 Message Date
Paschalis Korosoglou
b2c6306b94 Added package r version 3.4.3 (#6565) 2017-12-04 17:39:34 -07:00
健美猫
086a1cfe7e r: add version 3.4.2. (#6455) 2017-11-25 11:34:05 -07:00
Todd Gamblin
05fa302655
Replace github.com/llnl/spack with github.com/spack/spack (#6142)
We moved to a new GitHub org! Now make the code and docs reflect that.
2017-11-04 17:08:04 -07:00
Todd Gamblin
7dd79094b0 remove wildcards from make spack core and packages
- This removes all wildcard imports EXCEPT `from spack import *` in packages
2017-10-24 10:05:36 +02:00
Michael Kuhn
84ae7872d3 Update copyright notices for 2017 (#5295) 2017-09-06 17:44:16 -10:00
snehring
db74f4c3a1 Add a new package for IcedTea (#4804)
* alsa-lib: new package

* cups: new package

* icedtea: new package

* icedtea: adding JAVA_HOME variable

* alsa: removing placeholder

* icedtea: typo fix

* alsa: fixing formattting

* icedtea: formatting fixes and cleanup

* icedtea: additional cleanup

* jdk: adding provides('java') to jdk, setting jdk to default java.

* icedtea: adding jdk as a dependency

* java: changing depends_on('jdk') and similar entries to depends_on('java')

* icedtea: removing unused imports, trying to placate flake8.

* fastqc: fixing flake8 error

* bazel: fixing typo in java dependency

* jdk: changing provides java to a range

* icedtea: cleaning up. Splitting up checksums.

* icedtea: jdk dependency is build only
2017-08-05 14:53:09 -05:00
健美猫
870062076f Add version 3.4.1 for r. (#4799) 2017-07-18 13:04:49 +02:00
Todd Gamblin
cac4362f64 Make LICENSE recognizable by GitHub. (#4598) 2017-06-24 22:22:55 -07:00
Adam J. Stewart
f9ac965fb9 Document known issue with R concretization (#4313) 2017-05-27 12:51:03 -05:00
Douglas Duckworth
8b47fe5a78 added R 3.4.0, again (#4260) (#4294) 2017-05-19 11:55:48 -05:00
George Hartzell
0042b5e856 Add info for r@3.3.3 (#4128) 2017-05-05 13:04:46 -05:00
George Hartzell
b5acd5e44b Fix r package, tk no longer has an X variant (#3544)
Tk recently lost its X variant (it now always uses X).

That broke r, this commit fixes it.

Tested on CentOS 7.
2017-03-24 15:43:25 -05:00
Adam J. Stewart
dca4d2b15e Consistent docs and usage of env mod methods (#3351) 2017-03-14 22:26:44 -07:00
Henrik Bengtsson
4f297f4336 R: Using official cloud URL for CRAN (#2956)
cran.r-project.org runs on a single old-school server in Austria
and could potentially be overloaded if "everyone" used it.

cloud.r-project.org is a cloud-based repository that "automatic redirection to servers worldwide [...]", cf. https://cran.r-project.org/mirrors.html.

I assume, that cloud.* can be scale up as needed. Out of the official CRAN mirror, this should be the safest one to pick if a static CRAN mirror is needed.
2017-01-31 14:47:20 -05:00
Massimiliano Culpo
fc866ae0fe build systems: simpler, clearer decorators: run_after, run_before (#2860)
* PackageMeta: `run_before` is an alias of `precondition`, `run_after` an alias of `sanity_check`

* PackageMeta: removed `precondition` and `sanity_check`

* PackageMeta: decorators are now free-standing

* package: modified/added docstrings. Fixed the semantics of `on_package_attributes`.

* package: added unit test assertion as side effects of install

* build_systems: factored build-time test running into base class

* r: updated decorators in package.py

* docs: updated decorator names
2017-01-25 08:57:01 -07:00
Adam J. Stewart
bcef90fe10 Add --without-x when building r~X (#2864)
* Add --without-x when building r~X

* Add latest version of R

* Run patch for latest version as well
2017-01-23 15:29:48 -08:00
George Hartzell
162be154d2 Fix configure's zlib version check (#2901)
* Fix configure's zlib version check

R wants a version of zlib that is 1.2.5 or newer.

The version checking code just does a lexicographic comparison
of the first 5 characters of the string, so it seesthat the latest
zlib version, 1.2.10, as 1.2.1 and fails.

This patch changes the comparison to use zlibs' hex ZLIB_VERNUM
so that it does not suffer from this problem.

A version of this patch is wending it's way through the R comunity
community and will/should be included in a future release.

I tested the patch with the current R, 3.3.1.

* Tighten zlib dependency version (>= 1.2.5)

* Convert patch to level=1 format.
2017-01-23 10:20:54 -08:00
Adam J. Stewart
1ece25bdc2 Temporary workaround for R concretization bug (#2756) 2017-01-09 19:07:49 -08:00
Elizabeth Fischer
402dfe30f9 Get Rid of nobuild, nolink, and alldeps (#2765)
* Removing the nobuild, nolink, and alldeps dependency types in favor of being explicit.
* This will help with maintenance going forward, as adding more dependency types won't affect existing declared dependencies in weird ways.
* default deptype is still `('build', 'link')`
2017-01-07 19:59:02 -08:00
Elizabeth Fischer
3dd4a01a5e Standardize package names: lower-case, not Mixed_CASE (#2475)
* Rename packages

* Upcasing depends_on() in packages.

* Downcased extends('r')

* Fixed erroneously changed URL that had slipped through.

* Fixed typo

* Fixed link from documentation into package source code.

* Fixed another doc problem.

* Changed underscores to dashes in package names.

* Added test to enforce lowercase, no-underscore naming convention.

* Fix r-xgboost

* Downcase more instances of 'R' in package auto-creation.

* Fix test.

* Converted unit test packages to use dashes not underscores

* Downcase `r` in the docs.

* Update module_file_support.rst

Fix r->R for class R.
2017-01-04 18:24:07 -08:00