Commit Graph

18681 Commits

Author SHA1 Message Date
albestro
262c680997 neovim: add tree-sitter dependency + add v0.6.0 (#28145) 2021-12-24 13:57:15 +01:00
Jen Herting
054149698b py-fastprogress: new package (#28149) 2021-12-24 13:50:45 +01:00
Wouter Deconinck
a294acfb73 pythia8: bugfix for pythia8 +fastjet (#28153) 2021-12-24 13:47:18 +01:00
Cyrus Harrison
9602d0a03c dray: add v0.1.8 and v0.1.7 (#28147) 2021-12-24 13:43:11 +01:00
snehring
a3048438c3 lordec update and gatb-core (#28119)
* lordec: version update to 0.9 adding gatb-core as dep

* gatb-core: adding new package gatb-core
2021-12-24 13:42:30 +01:00
Vicente Bolea
6331778552 ParaView: add v5.10.0 (#28121) 2021-12-24 13:40:33 +01:00
Cody Balos
1513e57eee sundials: add v6.0.0 (#28032) 2021-12-24 13:38:36 +01:00
AMD Toolchain Support
d52e55d8de vasp: add support for aocc (#27950)
Co-authored-by: mohan babu <mohbabul@amd.com>
2021-12-24 13:36:15 +01:00
kjrstory
9c8a75ff9c npb package: add version 3.4.1 (#28122)
* The Class F problem has been added to seven of the benchmarks
  (BT, SP, LU, CG, MG, FT, and EP).
* The Class E problem has been added to the IS benchmark.
* In version 3.4.1, 'the number of processes' option does not apply.
* MPIFC and FC flags were added.
2021-12-23 18:52:59 -07:00
Glenn Johnson
f3035f98e1 r-htmltools: fix version 0.5.2 (#28124)
The lastest version of r-htmltools needs version 1.1.0 of r-fastmap.
This is not specified in the DESCRIPTION file.
2021-12-23 16:35:09 -07:00
Jen Herting
15951f0e6b New package: py-fastcore (#28148)
* [py-fastcore] created template

* [py-fastcore]

- added dependencies
- added homepage
- added description
- removed fixmes

* [py-fastcore] depends on setuptools
2021-12-23 14:11:17 -07:00
Axel Huebl
1c3881b48a HDF5 package: change 1.10.8/1.13.0 CMake Path (#28103)
These versions change the install location of CMake files used
by dependents, but most dependents don't seem to look in this
new location.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Chris White <white238@llnl.gov>
2021-12-23 12:11:50 -08:00
Jen Herting
704c81eda4 amber package: add ambertools21 for @20 (#28064)
* [amber] added 3 more patches for amber20
* [amber] updated dependencies for @20 (cuda, parallel-netcdf)
2021-12-23 11:39:09 -08:00
Andrew W Elble
74d64fd61a py-pymol: update package, new version 2.5.0 (#28044)
* py-pymol: update package, new version 2.5.0

* ensure legacy plugins still load/work
2021-12-23 12:33:53 -05:00
Vinícius
afd65a4cd0 simgrid package: add versions 3.28 and 3.29 (#28118) 2021-12-23 02:53:14 -07:00
Hadrien G
b6da473800 acts: add v15.1 and record incompatibility (#27942)
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2021-12-22 23:02:16 -07:00
Christoph Junghans
eee0f2b9d5 votca-*: merge packages into one (#28073)
* votca-*: merge packages into one

* Update package.py

* votca-*: make old version as deprecated

* votca-*: mark stable deprecated as well
2021-12-22 21:42:14 -07:00
Jen Herting
cb5d53e5a9 New package: py-qpth (#28047)
Co-authored-by: Doug Heckman <dahdco@rit.edu>
2021-12-22 20:29:08 -07:00
albestro
b5ba20ada4 New package: tree-sitter (#28110) 2021-12-22 19:18:09 -08:00
Bernhard Kaindl
d236b9438d llvm: Fix the llvm versions for using the MicrosoftDemange patch (#28140) 2021-12-22 16:53:10 -07:00
Pat Riehecky
522a7c8ee0 New package: microsocks (#27859) 2021-12-21 16:55:15 -08:00
Mark Olesen
433f743074 openfoam package: add v2112 release and latest patched v2106 (#28108)
Also remove x86_64-only handling for Darwin
2021-12-21 16:47:39 -08:00
Seth R. Johnson
38196894db perl: fix macOS build (#26290)
* perl: fix macOS build

With both 5.34.0 and 5.32.1 the build fails on macos-bigsur-skylake
%clang@12.0.5 and %clang13.0.0 :
```
2 errors found in build log:
     579013    /private/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-perl-5.34.0-tpha2u52qfwaraidpzzbf6u4dbqg7dk5/spack-src/cpan/
               Math-BigInt-FastCalc/../../miniperl "-I../../lib" -MExtUtils::Command::MM -e 'cp_nonempty' -- FastCalc.bs ../../lib/auto/Math/BigInt/FastCalc/Fas
               tCalc.bs 644
     579014
     579015    	Everything is up to date. Type '/Applications/Xcode.app/Contents/Developer/usr/bin/make test' to run test suite.
     579016    DYLD_LIBRARY_PATH=/private/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-perl-5.34.0-tpha2u52qfwaraidpzzbf6u4dbqg7d
               k5/spack-src  ./perl -Ilib -I. installperl --destdir=
     579017    WARNING: You've never run 'make test' or some tests failed! (Installing anyway.)
     579018      /rnsdhpc/code/spack/opt/spack/apple-clang/perl/tpha2u5/bin/perl5.34.0
  >> 579019    install_name_tool: error: sh -c '/Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /Applications/Xcode.app/Contents/Developer/Pl
               atforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -find install_name_tool 2> /dev/null' failed with exit code 256: (null) (errno=Invalid argument
               )
     579020    xcode-select: Failed to locate 'install_name_tool', requesting installation of command line developer tools.
     579021    Cannot update /rnsdhpc/code/spack/opt/spack/apple-clang/perl/tpha2u5/bin/perl5.34.0 dependency paths
  >> 579022    make: *** [install-all] Error 72
```
This is due to SYSTEM_VERSION_COMPAT being set.

* perl: conditionally set SYSTEM_VERSION_COMPAT based on CLT

The version of command line tools is the only difference between
@alalazo and my builds: his (v11) works only when SYSTEM_VERSION_COMPAT
is set to 1, and mine (v12.5 and v13) only work when it is unset.
2021-12-21 22:22:35 +01:00
snehring
389beaef97 structure: fixing build errors with gcc10+ removing unused dep (#28097) 2021-12-21 18:39:26 +01:00
iarspider
8ebad6963b New package: py-onnxmltools and dependencies (#28023)
* New package: py-onnxmltools and dependencies

* Small fix

* Changes from review

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update recipe following review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-21 11:15:13 -06:00
snehring
6b91d3700b soapdenovo2: fixing compiler errors in gcc10+ (#28098) 2021-12-21 10:51:47 +01:00
Adam J. Stewart
7aa2bdca44 py-build: add virtualenv variant (#28099) 2021-12-21 10:43:42 +01:00
snehring
5005e9a856 pcma: fixing compilation issues with gcc10+ (#28101) 2021-12-21 10:41:44 +01:00
Chris White
0a43dd1019 axom: add v0.6.1, fixed e4s builds (#28067) 2021-12-21 10:40:16 +01:00
Marie Houillon
a6d89853d4 openCARP packages: add version 8.2 (#28087)
Co-authored-by: openCARP consortium <info@opencarp.org>
2021-12-20 19:09:41 -08:00
Brian Spilner
116deb0386 CDO package: add version 2.0.2 (#28086)
Also fix URL for version 2.0.1 (sha256 is not changed)
2021-12-20 19:08:49 -08:00
Jen Herting
6647b2a4ca New package: py-ctgan (#28050)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-20 19:07:21 -08:00
Valentin Volkl
6c62fa461e harfbuzz package: add version 2.9.1 (#27927) 2021-12-20 18:29:52 -08:00
Jen Herting
e9edb5c96b New package: py-liac-arff (#28046) 2021-12-20 18:18:09 -08:00
Jen Herting
9869a2d0da New package: py-rdt (#28048)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-20 18:10:52 -08:00
Jen Herting
024c2b690a New package: py-faker (#28049)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-20 18:08:53 -08:00
Enrico Usai
cd211acd80 aws-parallelcluster: add v2.11.4 (#28094)
Also remove tilne from admins.
2021-12-20 16:49:49 -08:00
Anton Kozhevnikov
494f0053ae add sha256 sum (#28095) 2021-12-20 15:50:18 -07:00
Robert Cohn
d45280369f Intel oneAPI packages: add 2022.1.1 release (#28096)
Co-authored-by: Egorov, Andrey <andrey.egorov@intel.com>
2021-12-20 14:06:32 -08:00
Adam J. Stewart
c68652c88c py-torchgeo: add v0.1.1 (#28082) 2021-12-20 16:18:27 +01:00
Erik Schnetter
94dd9685cc nsimd: Declare missing py-chardet dependency (#28030)
Found by @stevenrbrandt.
2021-12-20 08:43:31 +01:00
Adam J. Stewart
a0f175f327 py-nbconvert: add v6.3.0 (#28075) 2021-12-20 07:57:27 +01:00
Wouter Deconinck
ea692ca6f7 assimp: add v5.1.4 (#28079) 2021-12-20 07:48:07 +01:00
Adam J. Stewart
02aab770db py-kornia: add v0.6.2 (#28080) 2021-12-20 07:30:34 +01:00
Adam J. Stewart
cdc5c44bb1 py-numpy: add v1.21.5 (#28081) 2021-12-20 07:30:17 +01:00
Seth R. Johnson
ece1e3905e cmake: new versions 3.22.x (#28077) 2021-12-19 19:59:00 -07:00
Wouter Deconinck
1e35d06bf0 geant4: new version 11.0.0 (preferred remains 10.7.3) (#27931)
* [geant4] new version 11.0.0

* [geant4] prefer 10.7.3 for now

* [vecgeom] new version 1.1.18

* [clhep] new version 2.4.5.1

* [g4emlow] new version 8.0

* [g4particlexs] new version 4.p

* [geant4-data] new version 11.0.0

* [geant4] @11.0.0: cxxstd=17: ^clhep@2.4.5.1: ^vecgeom@1.1.18:

* [geant4] depends_on cmake@3.16:

* [geant4-data] remove g4tendl comment

* [g4tendl] new version 1.4

* [geant4] default cxxstd=11 when @10, 17 when @11; use CMAKE_CXX_STANDARD

* [geant4] variant tbb whe @11:, depends_on tbb, sets GEANT4_USE_TBB

* [geant4] new variant vtk when @11:, depends_on vtk@8.2:

* [geant4] simplify GEANT4_USE_VTK with define_from_variant

* [geant4] remove variant cxxstd conditional again

* [geant4] flake8 space after comma
2021-12-19 10:43:59 -05:00
Adam J. Stewart
1a576e732e Python: default to 3.9 (#27997)
Both [Anaconda](https://www.anaconda.com/products/individual) and [Homebrew](https://formulae.brew.sh/formula/python@3.9) now default to Python 3.9, so Spack should follow suit.

I also added Python 3.10 while I was at it. Confirmed that it builds successfully on macOS 10.15.7 with Apple Clang 12.0.0. I'm unable to test the Cray and Fujitsu patches.

Fixes #27921
2021-12-19 00:08:20 -08:00
Morten Kristensen
9ace418371 py-vermin: add latest version 1.3.2 (#28072)
* py-vermin: add latest version 1.3.2

* [vermin] Fixed usages of super() without arguments (v3+)
2021-12-18 11:17:02 -07:00
Stephen McDowell
87978f7989 skip googletest and googlebenchmark for header only library (#28068) 2021-12-18 10:29:05 -06:00