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Author SHA1 Message Date
Robert Mijakovic
2894c24125 r: add v4.1.0 (#23757) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-05-19 10:00:52 +02:00
Jamie Finney
b3004e1dd0 Add caret/hat to spack spec help documentation (#23758) 
Co-authored-by: Jamie Finney <finneyjm@ornl.gov>
 2021-05-19 09:49:07 +02:00
Massimiliano Culpo
8146c0d848 gawk: add support for external find (#23716) 2021-05-19 09:33:28 +02:00
Paul
ccbd1f1d79 Go: add v1.16.4 and v1.15.12 (#23745) 2021-05-19 09:26:19 +02:00
Brian Van Essen
932e916c59 RDKit: new package (#23761) 
RDKit is a collection of cheminformatics and 
machine-learning software written in C++ and
Python.
 2021-05-19 09:25:40 +02:00
David Hughes
1a8d18a2d3 mpich: Apply fallow-argument-mismatch parameter with clang (#23748) 2021-05-19 06:46:51 +00:00
Adam J. Stewart
f407539abb py-pygeos: add v0.10 (#23781) 2021-05-19 06:19:17 +00:00
Valentin Volkl
2e58d09303 py-qtpy: recipe bugfix (#23747) 2021-05-19 07:34:59 +02:00
Vanessasaurus
8bed109e41 monitor: fix issue with attribute lookup (#23773) 
Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
 2021-05-19 07:33:09 +02:00
Massimiliano Culpo
1a5924f5fb gnupg: bumped versions, added maintainer (#23734) 2021-05-19 05:17:42 +00:00
Andreas Baumbach
77f155fec4 py-jinja2: add version 2.11.3 (#23698) 
* py-jinja2: add version 2.11.3

Change-Id: If845ff512bafed4d911b03463cae2154357ae5c3

* fixup

Change-Id: Ie39a8b7225826547fcbdb68cb083311a191903ef
 2021-05-19 04:57:23 +00:00
wspear
b21a4f5c89 TAU needs to specify pdt_c++ if built with intel. (#23775) 2021-05-19 02:08:14 +00:00
Tamara Dahlgren
5bd42d1b31 docs/packaging guide: Reference test stage directory (#23707) 2021-05-18 17:56:38 -07:00
Dan Bonachea
ce7516f25f upcxx: Add support for stand-alone post-install tests (#23714) 
This uses the existing script which is always installed for this purpose in modern versions.
 2021-05-18 17:40:51 -07:00
Michael Kuhn
f0d5d992e6 lmdb package: Fix build with other compilers (#23704) 
lmdb hardcodes gcc in its Makefile, so override it.
 2021-05-18 17:18:48 -07:00
Robert Mijakovic
79d8691dde mercurial: add version 5.8 (#23756) 2021-05-18 17:02:48 -07:00
Robert Mijakovic
18edf0f072 emacs: add version 27.2 (#23753) 2021-05-18 17:01:29 -07:00
Andreas Baumbach
60a6281c47 py-werkzeug: add versions including 0.15.6 (#23728) 2021-05-18 17:00:44 -07:00
Frédéric Simonis
6bf6567f9d precice: Add version 2.2.1 (#23743) 2021-05-18 16:37:40 -07:00
Michael Kuhn
9410d99153 Bugfix: fetching oddly-named resources from local mirrors (#23300) 
Spack uses curl to fetch URL resources. For locally-stored resources
it uses curl's file protocol; when using this protocol, curl expects
that the URL encoding conforms to RFC 3986 (which reserves characters
like '?' and '=' for special use).

We were not performing this encoding, and found a resource where
curl was interpreting this in an unfavorable way (succeeding, but
producing an empty file). This commit properly encodes URLs when
using curl's file protocol.

This error did not likely come up before because in most contexts
Spack was either fetching via http or it was using URLs without
offending characters (for example, the sha-based URLs in mirrors
never contain these characters).
 2021-05-18 15:26:49 -07:00
Robert Mijakovic
ba68cbc694 julia: new version, 1.6.1 (#23755) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-05-18 23:03:51 +02:00
Harmen Stoppels
4f6b4dcaac New package: ca-certificates-mozilla (#23632) 2021-05-18 12:50:45 -07:00
Andreas Baumbach
346e52de38 cppcheck: add versions including 2.0 and 1.88 (#23678) 2021-05-18 11:23:22 -07:00
Andreas Baumbach
b41ee03475 doxygen: fix build with gcc@10: for version 1.8.15 (#23680) 2021-05-18 11:21:54 -07:00
Desmond Orton
c22a5326d8 trinity: Version Update to 2.12.0 (#23430) 
Added version requirements for deps
Changed url to get proper versions
 2021-05-18 11:12:33 -07:00
Andreas Baumbach
13cb8ef2c2 fontconfig: add version 2.13.93 (#23681) 2021-05-18 11:03:40 -07:00
Justin M Wozniak
99cd09b2b2 Swift/T Release 1.5.0 (#23702) 
Add versions to adlbx (1.0.0), exmcutils (0.6.0), stc (0.9.0),
and turbine (1.3.0).
 2021-05-18 11:02:31 -07:00
Jim Galarowicz
977dad4c93 openspeedshop and cbtf packages: new versions and dependency updates (#23254) 
* Add versions 1.9.4 and 1.9.4.1 for cbtf-* packages
* Add versions 2.4.2 and 2.4.2.1 for openspeedshop packages
* Remove older versions
* Switch from generic dependency on elf to a dependency on the
  elfutils implementation for cbtf-* and openspeedshop packages
* For llvm-openmp-ompt, relax dependency on libelf to elf (cbtf-krell
  now depends on elfutils, and llvm-openmp-ompt, so unless this
  dependency is relaxed there would be a conflict)
* Update CMake build_type to support Debug, Release, RelWithDebInfo
  in cbtf-* and openspeedshop packages
* Update libmonitor patches when building as a dependency of
  cbtf-krell
 2021-05-18 09:40:01 -07:00
arjun-raj-kuppala
319f20d94f AMD ROCm release 4.2: core components part-1 (#23613) 2021-05-18 15:53:53 +02:00
Andreas Baumbach
20a99f4f04 git add older versions (#23682) 2021-05-18 10:50:55 +02:00
Harmen Stoppels
e3c59264d8 cray: fix builds on Alps/Eiger (CSCS) (#23470) 
Co-authored-by: Tiziano Müller <tiziano.mueller@chem.uzh.ch>
 2021-05-18 02:25:14 -06:00
eugeneswalker
4cd53cadb0 binutils: fix NameError from commit de8027 (#23715) 2021-05-18 09:03:08 +02:00
Andreas Baumbach
f1c849ca0f py-alembic: add new version 1.5.5 (#23686) 
* py-alembic: add new version 1.5.5

Change-Id: I80f57c1f29a689bfa1718dd3500ccda6623acf76

* fixup

Change-Id: I551888c25ca7bc0b738c40d63d12974510b59ecf
 2021-05-18 03:24:44 +00:00
Ross Miller
8f85d3b937 Fix minor build issue with UnifyFS. (#23709) 
This commit updates the UnifyFS package.py script to include a patch
that fixes the build problems on new-ish Linux distributions.

Fixes issue #23292
 2021-05-17 19:04:44 -04:00
Andreas Baumbach
0174936250 py-gitpython: add version 0.3.6 (#23695) 
Change-Id: I3424409f8a7575c6a13592c05e1e940f960fe8fe
 2021-05-17 13:07:18 -06:00
Jen Herting
193699f3c9 New package: r-assertive (#23637) 2021-05-17 12:04:15 -06:00
Andreas Baumbach
58751ac2e8 py-jsonpickle: restrict importlib dependency to appropriate python (#23699) 
Change-Id: I538d72eb97d3cc91e2e6854b40c5b91b39df6f62
 2021-05-17 12:47:20 -05:00
Andreas Baumbach
401f61c094 py-jedi: add older versions (#23697) 
Change-Id: I56de34bace2fb04156700ffd4f1b34408920d702
 2021-05-17 12:44:53 -05:00
Andreas Baumbach
84486be643 py-grpcio: add version 1.16.0 (#23696) 
Change-Id: I4acb232e171ddec688eb7871da80caaa05bf637b
 2021-05-17 12:44:20 -05:00
Andreas Baumbach
d577f25dcf py-google-pasta: add older versions (#23694) 
Change-Id: I5846415b4953a5f12f995672e586cadb80857db2
 2021-05-17 12:42:42 -05:00
Andreas Baumbach
b2bc0241eb py-astroid: add new versions and update dependencies (#23687) 
Change-Id: I2c07e75b404ec289feebdbfb09f6b0e733404911
 2021-05-17 12:31:34 -05:00
lukebroskop
dd350e83d3 CrayPE fix for axom (#23520) 
Pass -ef to the cce fortran compiler, fix the build system to use the correct openmp flag for CCE

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2021-05-17 11:22:16 -06:00
Andreas Baumbach
9d251e51a1 py-bottleneck: add new versions (#23689) 
Change-Id: I31a22fa1495cc2ceed33ba7084831c11120c03e7
 2021-05-17 11:04:24 -06:00
Vicente Bolea
e56aa15d22 ParaView: add new release v5.9.1 (#23657) 2021-05-17 12:51:56 -04:00
lukebroskop
46e0869631 CrayPE fixes for the slepc package (#23503) 
Use the gold linker for CCE (this may change later)

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2021-05-17 09:30:58 -07:00
Daniel Arndt
e34d996944 ArborX: Avoid calling mkdirp directly (#23691) 2021-05-17 18:28:55 +02:00
Andreas Baumbach
8ee8269ede py-coverage: add version and restrict newer python dependency (#23692) 
Change-Id: I7e790014fd448eb203a1963c90e22afde041ba50
 2021-05-17 11:28:29 -05:00
lukebroskop
de8027a820 CrayPE fix for binutils (#23500) 
Allow for multiple definitions at link time (for CrayPE)

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2021-05-17 09:26:15 -07:00
lukebroskop
b462ccb565 CrayPE fix for trilinos (#23518) 
Expand the use of cray_secas.patch and use the gold linker w/cce

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2021-05-17 09:23:24 -07:00
lukebroskop
87466df80f craype fixes for scr (#23510) 
turn off static linking, add -ldl flag

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2021-05-17 09:14:08 -07:00