Itaru Kitayama
5b5c56c7f1
neuron: add variant for caliper ( #23271 )
2021-04-29 10:03:30 +02:00
Vicente Bolea
15d2e60c16
Adds Paraview 5.9.1-RC2 ( #23327 )
...
Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
2021-04-28 15:30:21 -07:00
Tom Payerle
c0e53827aa
libtirpc: Fix directories returned for header files ( #23332 )
...
libtirpc puts its header files under prefix/include/tirpc, but
spack was returning just prefix/include for location of headers.
This will cause spack to return both prefix/include and
prefix/include/tirpc for headers, so both
include <rpc/xdr.h>
or
include <tirpc/rpc/xdr.h>
should work.
2021-04-28 15:08:42 -07:00
Robert Cohn
239e8db319
intel-oneapi-dnn: fix header/lib paths ( #23326 )
...
Help dependents find libraries/headers. Like intel-oneapi-mkl, this
package offers several different versions of libraries that conflict.
This PR chooses one of those versions. When
https://github.com/spack/spack/discussions/22749 is resolved, this
package should be updated to choose which libraries to use.
2021-04-28 14:06:36 -07:00
Chris White
c8084991b4
Honor global compiler flags ( #23305 )
2021-04-28 12:11:19 -07:00
Gregory Lee
b510464f04
mesa: fix build with upstream patch ( #23302 )
2021-04-28 16:22:00 +00:00
Jen Herting
d5b3d075d2
alembic: new package ( #22223 )
2021-04-28 17:03:30 +02:00
Massimiliano Culpo
5b12568c4f
Make Spack able to apply gz compressed remote patches ( #22823 )
...
Modified ncbi-rmblastn to retrieve patches from remote
2021-04-28 17:00:58 +02:00
Massimiliano Culpo
6ab859fb45
bzip2: fix typo in package ( #23312 )
...
A recently merged PR had a typo that slipped through CI. Here's a fix.
2021-04-28 14:19:10 +00:00
Scott McMillan
f5e6c32495
findutils: update package for nvhpc ( #23145 )
...
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-04-28 15:06:43 +02:00
Christoph Junghans
9faa3221b3
py-espressopp: update to py3 ( #23264 )
2021-04-28 15:00:42 +02:00
Jen Herting
48d2ec99d8
ffmpeg: add v4.3.2 ( #22573 )
2021-04-28 14:53:06 +02:00
Michael Kuhn
20791b5882
gcc: add v11.1.0 ( #23294 )
2021-04-28 14:17:55 +02:00
Itaru Kitayama
b43ed76fa7
nest: depend on py-scipy when +python ( #23306 )
...
Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
2021-04-28 12:17:09 +00:00
Itaru Kitayama
62a001dea6
scalasca: add v2.6 ( #23299 )
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Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
2021-04-28 14:14:05 +02:00
Jen Herting
13755d57c4
ghostscript: added v9.54.0, v9.53.3 + patch for freetype ( #22393 )
2021-04-28 13:54:41 +02:00
eugeneswalker
c27d7d7486
mesa18: depends on binutils+plugins for build ( #23285 )
2021-04-28 13:53:14 +02:00
Harmen Stoppels
94f894b1b2
binutils: default to +plugins ( #23309 )
2021-04-28 13:51:26 +02:00
Vicente Bolea
98f8689ccd
paraview: add v5.9.1-RC1, make 5.9.0 preferred ( #23226 )
...
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-04-28 13:39:34 +02:00
Peter Scheibel
10e4eeec9c
bzip2: add pic/debug options ( #23230 )
...
* Add pic (for static) and debug variants
* explicitly add -g flag for +debug (even though it is in Makefile)
2021-04-28 13:16:57 +02:00
eugeneswalker
19c2ad8185
spath: zlib is a link dependency ( #23303 )
2021-04-28 12:52:45 +02:00
Cody Balos
d9804d31f9
sundials: fix cuda architectures typo and specify raja variants ( #23293 )
2021-04-28 06:49:14 -04:00
Seth R. Johnson
e14baffbcf
vecgeom: add v1.1.13 ( #23308 )
2021-04-28 12:41:55 +02:00
Robert Underwood
159d3b3381
[tau]: Use compiler name instead of basename ( #23247 )
...
Previously the tau package got the cxx and cc names from
os.path.basename(self.compiler.cxx), however if the path to the compiler
looks like "/usr/bin/g++-10.2.0" then tau's custom build system doesn't
recognize it. What we want instead is something that looks like "g++"
which is exactly what cxx_names[0] gives us. We already did this for
fortran, so I am not sure why we didn't do it here. Not doing this
causes a build failure when tau tries to use a polyfill (vector.h,
iostream.h) that doesn't seem to be packaged with tau.
Additionally, tau needs some help finding mpi include directories when
building with MPI, so we provide them. Unfortunately, we can't just say
that the compilers are mpicc and mpicxx in the previous fix to have
these things found automatically. This is because tau assumes we always
need the polyfill when the compilers are set to these values which again
causes a build failure.
2021-04-27 20:12:01 -07:00
Dmitri Smirnov
b23b126013
root: Add variant for veccore option ( #23237 )
2021-04-27 21:09:16 -05:00
Pat McCormick
24c87e07b5
Legion package overhaul ( #23252 )
...
Complete overhaul of the Legion package to better capture a more
up-to-date set of configuration options and variants. This update
adds additional flexibility and features that were requested by
users.
* Add version 21.03.0 and "stable" branch
* Remove all older numeric versions
* Add support for CUDA, Python, PAPI support and more
* Add maintainer
* This no longer uses the Spack `gasnet` package: it defaults to
using an embedded gasnet or can be pointed to an external
2021-04-27 16:51:48 -07:00
Owen Solberg
6f0042b47b
fix shadow checksum per #23263 ( #23291 )
2021-04-27 21:23:56 +00:00
Harmen Stoppels
e501f79d43
Make it possible to build git without man pages and native language support ( #23066 )
2021-04-27 22:47:59 +02:00
Vasileios Karakasis
99a5bf7892
Add ReFrame 3.5.3 ( #23265 )
2021-04-27 12:20:54 -07:00
Sreenivasa Murthy Kolam
b2d3d35528
Add git repo path for rocm packages ( #23270 )
2021-04-27 11:38:14 -07:00
Zack Galbreath
295377b2b4
Don't report configure errors to CDash for successful packages ( #23286 )
...
Convert configure errors detected by our log scraper into warnings when
the package being installed reports that it was successful.
2021-04-27 12:20:32 -06:00
Valentin Volkl
07e50c1732
prmon: add version 2.2.0 ( #23207 )
...
Switched to .zip source archives to avoid problems with spack checksum finding binary assets when excluding versions.
2021-04-27 10:56:18 -07:00
wspear
303e506f2b
Add +plugins to binutils dependency ( #23272 )
...
Tau will build but instrumented applications will fail to link with tau if it is built with a binutils that does not include the plugins variant.
2021-04-27 10:36:17 -07:00
eugeneswalker
4179c8bd72
kvtree 1.1.1: updated checksum ( #23262 )
2021-04-27 09:34:24 -07:00
darmac
4f53975a2a
Add new package: py-aiodns ( #22138 )
2021-04-27 07:16:39 -05:00
Tim Haines
cad06a15e0
Dyninst: add elfutils versioning ( #19648 )
2021-04-27 07:15:37 -05:00
Rémi Lacroix
42af3c16bf
GLM: Add version 0.9.9.8. ( #22467 )
...
The CMake install target was removed in version 0.9.9.6 so update the package accordingly.
2021-04-26 16:58:12 -07:00
Jen Herting
0a6227870c
New package: r-assertive-models ( #23266 )
2021-04-26 16:46:33 -06:00
Jen Herting
934d845806
New package: r-assertive-reflection ( #23267 )
2021-04-26 17:45:46 -05:00
Tim Haines
c23ffd89ff
Dyninst: Add dependencies for v11.0.0 ( #23121 )
...
Also update the mpileaks unit test to avoid a conflict on CentOS 6
where Dyninst >=11.0.0 no longer builds due to a compiler version
conflict.
2021-04-26 13:53:53 -07:00
Drew Whitehouse
45b4dcb9ed
add a package libcxxwrap-julia ( #23076 )
2021-04-26 14:04:11 -06:00
QuellynSnead
b7c4bfb2a7
hypre: Add a variant for unified memory support ( #23258 )
...
Enabling unified memory requires cuda to be enabled as well.
2021-04-26 12:55:37 -07:00
Adam J. Stewart
418c78fdc9
py-scipy: add v1.6.3 ( #23253 )
2021-04-26 16:06:57 +00:00
Glenn Johnson
2473e0cc82
r-blavaan: new package ( #23232 )
2021-04-26 10:03:52 +02:00
miheer vaidya
d21339bae5
fasd: new package ( #23238 )
2021-04-26 02:02:20 -06:00
Glenn Johnson
7952a802ed
r-brms: new package ( #23233 )
2021-04-26 10:01:47 +02:00
kurtsansom
4b62344163
p4est: add v2.3.1 ( #23235 )
2021-04-26 09:59:49 +02:00
Robert Mijakovic
afa3ddedba
openmpi: add v4.1.1 ( #23242 )
...
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-04-26 09:39:16 +02:00
Valentin Volkl
70955dbce3
py-hepunits: add v2.1.0 ( #23244 )
2021-04-26 09:37:26 +02:00
Valentin Volkl
40d8723d6d
py-awkward: add v1.2.2, py-uproot: add v4.0.7 ( #23245 )
2021-04-26 09:37:07 +02:00
Massimiliano Culpo
d0eca2c639
clingo: add v5.5.0, v5.4.1 ( #23239 )
...
fixes #23236
Version 5.5.0 depends on Python 3.6 or later
and CFFI
2021-04-25 21:28:30 -07:00
Julius Plehn
0e43f52991
FLEXI: Updates cmake options according to recent changes ( #23042 )
...
* fixes cmake options
* adds several optional tools
* use tag & consistent names
2021-04-25 23:26:11 +02:00
Matthieu Dorier
769e549cd9
argobots: changed 'no' into 'none' for variant ( #23171 )
2021-04-23 14:47:42 -07:00
Glenn Johnson
5809ee6d26
New package: r-champ ( #23221 )
2021-04-23 14:45:42 -07:00
Andrew W Elble
2b2a26022b
gcc package: fix build with +nvptx ( #23165 )
...
backport of 383400a6078d upstream to allow for cuda@11:
2021-04-23 14:45:18 -07:00
Glenn Johnson
94ef4e9eae
New package: r-nonnest2 ( #23222 )
2021-04-23 14:29:52 -07:00
Glenn Johnson
e0c82fcf82
New package: r-shinystan ( #23223 )
2021-04-23 14:29:06 -07:00
Glenn Johnson
a5db2a7403
r-renv: new package ( #23067 )
2021-04-23 20:26:51 +00:00
Harmen Stoppels
fef05621a7
Bootstrap with -O3 in cmake ( #23147 )
2021-04-23 11:10:09 -06:00
romerojosh
ce664f6f5f
Add NCCL 2.8.4 and 2.9.6. ( #23219 )
2021-04-23 16:57:06 +00:00
romerojosh
037e8deecb
Add cuDNN 8.2.0 ( #23214 )
2021-04-23 16:41:43 +00:00
Rémi Lacroix
44136223f7
MUMPS: allow for more optimized builds ( #23161 )
...
* MUMPS: Use GEMMT BLAS extension when possible.
This should improve the performance and is recommanded by the developers.
* MUMPS: Add a new "openmp" variant.
* MUMPS: Add a "blr_mt" variant.
This improves performance when using OpenMP but might not be compatible with all multithreaded BLAS.
2021-04-23 18:19:15 +02:00
Miroslav Stoyanov
2c9068ead8
tasmanian: add v7.5, improved cuda and rocm support ( #23148 )
2021-04-23 16:48:08 +02:00
David Hadley
2f9bfd7e09
ROOT: fix pyroot build failure in v6.20.0 ( #23038 )
2021-04-23 16:46:27 +02:00
Andrew W Elble
c575b1ce9b
openmm: add v7.5.0 ( #23037 )
2021-04-23 16:44:57 +02:00
Glenn Johnson
32368c7f46
r-rjava: set JAVAH environment variable ( #23055 )
...
Set the path to javah via the JAVAH environment variable. If it is
a version of java that does not have javah it will fall back to `javac
-h`. Without specifying this the build could pick up a javah from the
system.
2021-04-23 16:40:32 +02:00
Glenn Johnson
f246f6701a
r-runjags: new package ( #23058 )
2021-04-23 16:39:44 +02:00
Glenn Johnson
675de93b32
r-lavaan: new package ( #23138 )
2021-04-23 08:39:25 -06:00
Glenn Johnson
7c6692b0cb
r-colourpicker: new package ( #23136 )
2021-04-23 16:36:12 +02:00
Glenn Johnson
a7fb70853e
r-isva: new package ( #23137 )
2021-04-23 16:35:40 +02:00
Glenn Johnson
0c56b59877
r-dmrcate: new package ( #23151 )
2021-04-23 16:28:24 +02:00
Gregory Lee
bcea5e7ba4
mpa and fgfs: add v1.1.1 ( #23173 )
2021-04-23 16:09:26 +02:00
snehring
c3fbe0f026
gmap-gsnap: add v2021-03-08 ( #23178 )
2021-04-23 16:02:56 +02:00
Glenn Johnson
a276f9405c
augustus: add v3.4.0 and update package ( #22879 )
...
- add version 3.4.0
- add patch for bam2wig when version 3.4.0
- url format changed again, hopefully stable now
- added missing python dependency when version >3.3.1
- have older version compile with htslib, samtools ,bcftools
- new dependencies for version 3.4.0
- sqlite
- mysql-client
- mysqlpp
- lp-solve
- suite-sparse
- refactored filtering code
- set python interpreter in scripts
2021-04-23 15:56:22 +02:00
Robert Mijakovic
ce6a617706
shadow: add v4.8.1 ( #23185 )
...
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-04-23 15:51:35 +02:00
Tamara Dahlgren
19b9789b45
fontconfig: resolve tarball issue fcobjshash.h ( #23190 )
2021-04-23 15:37:25 +02:00
Greg Becker
80c8b11d77
mpich: post-configure patch for cce ( #23193 )
2021-04-23 15:22:39 +02:00
Valentin Volkl
30c81b127c
pythia8: add v8304, fix copy-paste errors in configure arguments ( #23028 )
2021-04-23 14:55:04 +02:00
Cameron Stanavige
93976d018d
er: add v0.0.4 ( #23022 )
...
This adds that new version to the package, updates the url, and
updates the hash of v0.0.3 for the new url.
This also updates the KVTree dependency as MPI is required to be
enabled in KVTree for er to work.
rankstr is now also required by er for recently added tests.
2021-04-23 06:46:18 -06:00
Valentin Volkl
5641923dfa
py-particle: add v0.14.1 ( #23216 )
2021-04-23 14:15:49 +02:00
Tamara Dahlgren
6f25e5242e
Docs: Updated copyrights in files still using 2020 as ending year ( #23215 )
2021-04-22 22:23:09 -07:00
Robert Pavel
e64fe11506
Initial Version of Ascent Miniapp Spackage ( #23170 )
...
Initial version of ascent miniapp spackage
2021-04-22 18:35:43 -07:00
Mark W. Krentel
09028f7407
hpctoolkit: fix patch from #22864 ( #23149 )
...
PR #22864 added a patch to hpctoolkit to fix an issue with gcc 10.x, and the patch was applied to all revs unconditionally. But this was fixed in hpctoolkit master on Aug 11, 2020, so the patch should only apply to old revs.
Fixes #22951 .
2021-04-22 19:07:13 -06:00
Itaru Kitayama
010e5761d6
NEST package: add version @master; fix ~python ( #23211 )
2021-04-22 14:35:00 -07:00
estewart08
b0e4950555
[AMD] - rocm-openmp-extras 4.1 updates. ( #22998 )
...
Update package with 4.1 sha keys.
Use variant to disable openmp in the build of llvm-amdgpu.
Set CPATH, LIBRARY_PATH so that clang knows to look in the rocm-openmp-extras for headers/libraries.
Disable flang warnings as Spack thinks they are errors.
In ROCm 4.1, the plugin changed names from hsa -> amdgpu.
Update HSA_INCLUDE for 4.1.0.
2021-04-22 12:11:39 -07:00
Kelly (KT) Thompson
c3733771e4
Update patchfile to allow xl+cuda builds. ( #23201 )
2021-04-22 12:10:12 -06:00
Harmen Stoppels
b904e9aa1c
SIRIUS 7.2.1 ( #23199 )
2021-04-22 11:40:25 -06:00
Massimiliano Culpo
89ae2cb365
minisign: add v0.9 and v0.8 ( #23202 )
2021-04-22 10:31:56 -07:00
Frank Willmore
60c909cee5
prepend missing self. to spec ( #23172 )
2021-04-22 11:40:17 -05:00
Gregory Lee
7322a9e3be
boost: only apply boostrap-toolset.patch for version 1.75 ( #23174 )
2021-04-21 21:25:07 -06:00
Glenn Johnson
e0549f5e88
ncbi-rmblastn: add v2.11.0 ( #22788 )
2021-04-22 05:20:51 +02:00
Jen Herting
5bec197de1
New package: r-assertive-files ( #23183 )
...
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 17:24:22 -05:00
Jen Herting
ae045ac071
New package: r-assertive-matrices ( #23184 )
...
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 17:20:36 -05:00
Jen Herting
da520d7bb3
New package: r-assertive-datetimes ( #23180 )
...
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 17:18:45 -05:00
Harmen Stoppels
730fbae463
Disable multithreaded version of zstd by default ( #23167 )
...
* Disable multithreaded version of zstd by default
* zstd pthreads by default again! but configurable, and turned off in GCC
2021-04-21 22:17:08 +02:00
Jen Herting
ee76c329f8
New package: r-assertive-numbers ( #23181 )
...
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 19:30:31 +00:00
Sergei Shudler
75fd886f62
MAGMA: Add e4s testsuite-inspired smoke test ( #23011 )
2021-04-21 11:12:59 -07:00
Massimiliano Culpo
d670f3aa40
lbann: remove deprecated variants in opencv ( #23176 )
2021-04-21 17:28:33 +00:00
Cameron Stanavige
0ea1b9705f
axl: add version 0.4.0 ( #23044 )
...
* Swap .zip downloads with .tar.gz downloads (and update download
hashes)
* New variants: intel_cppr and bbapi_fallback support
2021-04-21 10:24:30 -07:00
Cameron Stanavige
44d995b6d5
unifyfs: add version 0.9.2 ( #22390 )
...
UnifyFS has been integrated with updated versions of its mochi-margo
dependency (and mochi-margo's mercury and libfabric dependencies).
This removes support for version 0.9.0
2021-04-21 10:20:41 -07:00
