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Author SHA1 Message Date
dependabot[bot]
29ee861366 build(deps): bump docker/login-action from 3.0.0 to 3.1.0 (#43176) 
Bumps [docker/login-action](https://github.com/docker/login-action) from 3.0.0 to 3.1.0.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](343f7c4344...e92390c5fb)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-03-14 05:27:16 +01:00
John W. Parent
b1a984ef02 msvc: patch property ref bug (#43173) 2024-03-13 22:28:36 +00:00
Christopher Christofi
cc545d8c9a jags: add version 4.3.2 (#43166) 2024-03-13 23:06:03 +01:00
Ashwin Kumar Karnad
49ff816fb0 octopus: disable gdlib by default (#43161) 2024-03-13 13:04:39 -06:00
Ashwin Kumar Karnad
8c33841567 Add iamashwin99 as a maintainer in Octopus package (#43163) 2024-03-13 12:59:41 -06:00
Ashwin Kumar Karnad
21b50fbbe3 octopus: Support new version octopus@14 (#43160) 
* add checksum for octopus 14

* Update dependencies for BerkeleyGW package
 2024-03-13 12:59:16 -06:00
Martin Aumüller
2a8e503a04 protobuf: apply centos 8 patch only to @3.4: (#43162) 
does not apply cleanly to older versions
 2024-03-13 12:54:02 -06:00
Wileam Y. Phan
4b695d4722 rocm-openmp-extras: Fix resource download URLs (#43147) 
* rocm-openmp-extras: Fix resource download URLs

* Apply review suggestions
 2024-03-13 12:53:46 -06:00
Juan Miguel Carceller
2fa816184e py-ruff: add version 0.3.0 and deprecate the oldest version (#43069) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2024-03-13 11:03:28 -07:00
Brian Spilner
25f622e809 update to cdo-2.4.0 (#43071) 2024-03-13 11:01:41 -07:00
吴坎
7506acabe7 antlr4-cpp-runtime: update dependencies (#43115) 
* update dependencies

* Update package.py
 2024-03-13 11:00:54 -07:00
Dom Heinzeller
3a828358cb Update var/spack/repos/builtin/packages/ecmwf-atlas/package.py: set correct ectrans/trans variant, configure tesselation variant (#43151) 2024-03-13 10:19:24 -07:00
Adam J. Stewart
94a1d1414a spack.patch: support reversing patches (#43040) 
The `patch()` directive can now be invoked with `reverse=True` to apply a patch in reverse.
This is useful for reverting commits that caused errors in projects, even if only the forward
patch is available, e.g. via a GitHub commit patch URL.

`patch(..., reverse=True)` runs `patch -R` behind the scenes. This is a POSIX option so we
can expect it to be available on the `patch` command.

---------

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2024-03-12 23:22:10 -07:00
downloadico
0f080b38f4 abinit: add version 9.10.5 (#43148) 
set the FC variable to the MPI Fortran compiler and also set the F90 variable
to the same compiler for versions 9.8 and up.  FC needs to be set because the
configure script still uses FC.
 2024-03-12 14:04:35 -07:00
Alec Scott
f1ec4859c8 unmaintained packages: add new versions (#43112) 
* unmaintained packages: add new versions
* Fix parallel and numactl
* Revert numactl changes
* rollback lua-sol2 version
* Update alluxio version format
 2024-03-12 13:34:17 -07:00
Greg Sjaardema
63baba0308 SEACAS: Make latest release available in spack (#43123) 2024-03-12 11:32:32 -07:00
Christopher Christofi
aeec861544 py-art: add new package (#43127) 2024-03-12 11:29:13 -07:00
Christopher Christofi
e54d4678f9 py-lazy-loader: add new version (#43130) 2024-03-12 11:14:17 -07:00
Dom Heinzeller
187b8adb4f ecmwf-atlas@0.36: depend on ecbuild@3.4: (#43133) 2024-03-12 11:00:15 -07:00
Samuel K. Gutiérrez
d6fd96f024 libquo: Update default version from 1.3.1 to 1.4. (#43057) 
Signed-off-by: Samuel K. Gutierrez <samuel@lanl.gov>
 2024-03-12 10:28:30 -07:00
Andrey Perestoronin
e3b6d2c3c7 Intel oneapi compilers 2023.2.4 (#43144) 
* added intel-oneapi-compilers

* added classics version
 2024-03-12 12:54:19 -04:00
Tamara Dahlgren
1e9c46296c perl testing: refactor stand-alone testing into base class (#43044) 2024-03-12 15:39:18 +01:00
Valentin Volkl
48183b37be gaudi: add py-yaml dependency (#43116) 
Needed to parse job options in yaml format (https://gitlab.cern.ch/gaudi/Gaudi/-/blob/master/GaudiKernel/python/GaudiKernel/ProcessJobOptions.py#L528).
In principle this is optional, but it's needed for the test  35 - GaudiKernel.pytest.nose.test_Configurables (Failed). Seems like there's no harm done in adding this as a full dependency.
 2024-03-12 08:58:32 -05:00
Oakley Brunt
9a3d248348 py-psyclone and py-fparser: Add new releases (#42744) 
* py-psyclone and py-fparser new releases added

* py-fparser: add missing releases for py-psyclone

* py-psyclone: actioned @adamjstewart comments

* py-psyclone: removed py-pytest-pylint

* py-pytest-pylint: added package @ latest version

* py-pytest-pylint: reformatted

* Update var/spack/repos/builtin/packages/py-psyclone/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-pytest-pylint: added build deps and runtime dep versions

* py-pytest-pylint: removed version from setuptools

* py-psyclone: add py-pytest-pylint test dep and alphabetize deps

* Update var/spack/repos/builtin/packages/py-pytest-pylint/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-psyclone: deps ordered

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2024-03-12 14:46:48 +01:00
Pierre Blanchard
03e22adb5b sleef: add v3.6 (#42978) 2024-03-12 11:04:17 +01:00
Massimiliano Culpo
5f5fc78236 Update archspec to v0.2.3 (#42854) 2024-03-12 09:31:15 +01:00
Adam J. Stewart
e12a8a69c7 py-neuralgcm: add new package (#43117) 
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2024-03-11 21:02:03 -06:00
Christopher Christofi
001af62585 perl-math-symbolic: add required perl-parse-recdescent dependency (#42157) 
* perl-math-symbolic: add required perl-parse-recdescent dependency

* perl-math-symbolic: add new runtime dependency
 2024-03-11 17:09:51 -06:00
Christopher Christofi
f5e89df6f2 perl-parsetemplate: add new package (#41845) 
* perl-parsetemplate: add new package

* perl-parsetemplate: update to latest copyright date and add license
 2024-03-11 17:04:35 -06:00
Massimiliano Culpo
ce75adada6 Fix callbacks accumulation when using mixins with builders (#43100) 
fixes #43097

Before this PR the behavior of mixins used together with
builders was to mask completely the callbacks defined from
the class coming later in the MRO.

Here we fix the behavior by accumulating all callbacks,
and de-duplicating them later.
 2024-03-11 20:48:21 +01:00
Adam J. Stewart
24d37df1a2 py-climax: add new package (#43121) 2024-03-11 12:47:20 -07:00
Stephen Sachs
a9d294c532 aocl-utils: source sha has changed (#43120) 
* aocl-utils: source sha has changed

* aocl-utils: version 4.1 hash updated
 2024-03-11 12:45:30 -07:00
Adam J. Stewart
9dcaa56db4 py-onnx-opcounter: add new package (#43119) 2024-03-11 12:42:16 -07:00
Adam J. Stewart
98162aa2e1 py-earth2mip: add new package (#43062) 
* py-earth2mip: add new package

* Fix audit tests

* Make things easier to concretize

* Make things easier to concretize

* Fix magics build

* Fix onnx build

* blacken

* cmake > py-cmake

* Fix onnxruntime build

* onnxruntime: remove unknown cmake vars

* Trick bazelisk into using Spack bazel

* Different deps for main

* protobuf: add v3.25.3

* Enforce upper bound on jaxlib version

* py-chex: add v0.1.85

* py-dm-haiku: add v0.0.12

* py-jax: add v0.4.25

* Older jaxlib doesn't build on ppc64le either
 2024-03-11 12:28:03 -07:00
Alec Scott
3934df622c fzf: add v0.47.0 (#43113) 2024-03-11 11:58:15 -07:00
tpeterka
dbf5d79557 updated diy/package.py to version 3.6.0 (#43101) 2024-03-11 11:56:26 -07:00
eugeneswalker
97e29e501d e4s ci stacks: add cp2k cpu and gpu specs (#42454) 
* e4s ci stacks: add cp2k cpu and gpu specs

* remove non-building cp2k specs
 2024-03-11 09:29:51 -07:00
Wouter Deconinck
258c651a8f geant4: new variant timemory (#43111) 
* geant4: new variant timemory

* geant4: depends_on timemory@3.2:

* geant4: fix style
 2024-03-11 15:50:02 +00:00
downloadico
43ca6da346 ruby: add version 3.3.0 (#43058) 
* ruby: add version 3.3.0

* added dependency on libyaml
 2024-03-11 08:49:24 -07:00
Adam J. Stewart
9786bd932b Update TensorFlow ecosystem (#41069) 2024-03-11 14:33:16 +01:00
Sinan
c72619d4db package/qgis: add new version (#42888) 
* package/qgis: add new version

* improve Qsci.pro

* improve

* fix undefined symbol qsciprinter error

* add import test

* fix bug

* add version 3.36

* [@spackbot] updating style on behalf of Sinan81

* fix long line

* only run import test when +python

* first attempt at stand-alone test

* add TODO

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
Co-authored-by: Sinan81 <Sinan@world>
 2024-03-11 05:09:29 -05:00
Mikael Simberg
8ecae17c46 dla-future: Add patch for compilation with newer ROCm versions (#42348) 2024-03-11 10:44:00 +01:00
Massimiliano Culpo
1e47ccb83a Remove dead code (#43114) 
* Remove dead code in spack
* Remove dead code in llnl
 2024-03-11 00:47:55 -07:00
Jonas Eschle
d6421a69eb fix typo in dependency (#43105) 2024-03-10 18:56:27 -07:00
dependabot[bot]
000dff2fd4 build(deps): bump docker/build-push-action from 5.1.0 to 5.2.0 (#43107) 
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5.1.0 to 5.2.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](4a13e500e5...af5a7ed5ba)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-03-10 18:55:44 -07:00
dependabot[bot]
1e413477dd build(deps): bump mypy from 1.8.0 to 1.9.0 in /lib/spack/docs (#43103) 
Bumps [mypy](https://github.com/python/mypy) from 1.8.0 to 1.9.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.8.0...1.9.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-03-10 18:54:58 -07:00
Pranav Sivaraman
8955e63a68 feat: add LLVM v18.1.1 (#43109) 2024-03-10 08:55:39 +01:00
John W. Parent
bf14b424bb proj: correct CMake arg for shared build with proj older than 7.0.0 (#43089) 
* proj: correct CMake arg for shared build with proj older than 7.0.0

* Actually use new CMake arg

* Update var/spack/repos/builtin/packages/proj/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
develop-2024-03-10 		2024-03-09 00:40:27 -07:00
Arne Becker
14209a86a6 perl-bio-eutilities and deps: new packages (#42869) 
This adds Spack packages for these Perl distributons:
- Bio::DB::EUtilities and its dependencies:
- Bio::ASN1::EntrezGene
- Bio::Cluster
- Bio::Variation
 2024-03-08 10:42:26 -08:00
Arne Becker
b7d9900764 perl-test-warn: update version, dependencies (#42901) 
* perl-test-warn: new package
  Adds Test::Warn
* Revive older version
* perl-test-warn: fix URL and deprecate old version
 2024-03-08 10:40:20 -08:00