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9561 Commits

Author SHA1 Message Date
Glenn Johnson
c56f03a3ba The perl-uri-escape package duplicates perl-uri (#12971) 
* The perl-uri-escape package duplicates perl-uri

The Perl URI::Escape module is in the Perl URI package so the Spack
perl-uri-escape package is a duplicate of the perl-uri package. This PR
does the following:

- replace `depends_on('perl-uri-escape')` with `depends_on('perl-uri')`
  in packages that dependend on perl-uri-escape
- add the version from perl-uri-escape to perl-uri
- remove the unneeded dependency from perl-uri
- remove the perl-uri-escape package

* Reinstated perl-test-needs dependency

Put the perl-test-needs dependency for perl-uri back in but set it to
type='test'.

* For tests to succeed the type must be ('build', 'test')
 2019-09-29 09:27:42 -05:00
Massimiliano Culpo
467261803f raxml: simplified recipe by removing SIMD variants (#12952) 
Now the support for SSE3 or AVX is tested on the selected target
 2019-09-28 13:45:01 -05:00
t-karatsu
c065c25a4c bowtie: fix for aarch64, and bugfix about c++11-narrowing. (#12953) 2019-09-28 13:44:02 -05:00
Massimiliano Culpo
4cebc68f06 vdt: simplified recipe by removing SIMD variants (#12954) 
Now the support for SSE3 or AVX is tested on the selected target
 2019-09-28 13:41:57 -05:00
Jaroslav Hron
7e9365036f correct with-xxx-lib= options (#12964) 2019-09-28 13:39:45 -05:00
Patrick Schratz
86a85b7eb2 update neovim (#12965) 2019-09-28 13:28:27 -05:00
Shintaro Iwasaki
3776eccc4b bolt: add a new version, 1.0rc2 (#12966) 2019-09-28 13:27:33 -05:00
Daryl W. Grunau
8db94bcc86 eospac: laws.lanl.gov -> laws-green.lanl.gov (#12970) 2019-09-27 17:28:38 -07:00
Ross Miller
c49c37af9b py-adios package: restrict python dependency to <=3.6.x (#12932) 
The adios code (currently) won't compile against the Python 3.7 C API.
This change adds a dependency on 3.6 or less.
 2019-09-27 17:19:36 -07:00
Kevin Huck
b4c28182dc Tau package: turn off unsupported variants by default on OSX (#12890) 2019-09-27 17:16:44 -07:00
G-Ragghianti
61d41eea7f New package: libibumad (#12886) 2019-09-27 17:02:34 -07:00
Glenn Johnson
fc99eddb12 New package: maker and dependencies (#12904) 2019-09-27 14:59:58 -07:00
Seth R. Johnson
5201d2615e qt4: fix 'arch' string due to microarchitecture change (#12957) 
qt4 fails to build because it's expecting something like 'x86_64' rather 
than 'broadwell'.
 2019-09-26 21:15:17 +02:00
Massimiliano Culpo
90236bc9f5 Update target comparison semantic for a few packages (#12947) 
Use spec.target.family instead of spec.architecture.target
 2019-09-26 10:25:12 +02:00
Massimiliano Culpo
31e5318c24 Removed references to '(-march|-mtune|-mcpu)=native' (#12948) 
Now that Spack injects microarchitecture specific optimizations for
the selected target, packages should avoid adding flags that could
step over those.
 2019-09-26 10:02:08 +02:00
Massimiliano Culpo
78d051b534 parsimonator: simplified recipe by removing SIMD variants (#12949) 
Now the support for SSE3 or AVX is tested on the selected target
 2019-09-26 09:33:18 +02:00
Seth R. Johnson
f2967b6c16 New package: flibcpp (Fortran bindings to C++ standard library) (#12926) 2019-09-25 19:25:24 -07:00
liuyangzhuan
b384504218 butterflypack package: add version 1.0.3 (#12927) 2019-09-25 19:16:47 -07:00
Glenn Johnson
dd626a0f07 interproscan package: add version 4.8, patch for version 5 (#12897) 
This PR adds interproscan-4.8, which has a completely different build
system than version 5. Note that this builds for running on a host as
opposed to a queue system. I am fairly certain that a queue system can
be configured later.

This PR also adds a patch for intrproscan-5 to build when the user
building the packages has a large GID by setting posix mode for tar.
 2019-09-25 19:04:57 -07:00
Sinan
c5860d89b7 libspatialite package: add version 3.0.1 and missing dependencies (#12843) 2019-09-25 18:48:48 -07:00
Sinan
507b28de18 py-imageio package: add versions 2.4.1 and 2.5.0 (#12884) 2019-09-25 18:44:57 -07:00
Matthieu Dorier
e6cae978b8 llvm, mesa: update target comparison semantics (#12914) 
* llvm: fixed issues with syntax and formatting
  * use spec.architecture.target.family
  * use spec.target instead of spec.architecture.target
* mesa: use == instead of __contains__
 2019-09-25 16:41:02 -07:00
Adam J. Stewart
4e858e24b0 libflame: fix macOS build (#12950) 2019-09-25 18:37:33 -05:00
Matthieu Dorier
71cc29691b openblas: fixed a query to target family (#12910) 2019-09-25 22:15:23 +02:00
Christoph Junghans
ccfe8aaf76 portage: fix RelWithDebInfo build (#12944) 2019-09-25 11:29:43 -06:00
Christoph Junghans
e123058721 kokkos-kernels: initial commit (#12934) 2019-09-25 09:00:01 -06:00
Mathias Jacquelin
7a11a2ccdb Upcxx package: remove warning, add version 2019.9.0 (#12880) 
A function added to this package ran as part of importing it and
printed a warning for most Spack invocations, this removes the
warning message.

Also:

* Use compilers directly instead of Spack compiler wrappers (since
  references to the compiler are embedded in text and binary files
  of the installation)
* Add 'cross' variant for setting CROSS environment variable for
  build
* Set UPCXX_INSTALL for generated module files
* Set UPCXX_GASNET_CONDUIT/UPCXX_NETWORK in generated module files
  on Cray systems
* Also set UPCXX_NETWORK in build environment for Cray systems
 2019-09-24 13:25:05 -07:00
Simo Tuomisto
6cd5edacca heaptrack: added new package at version 1.1.0 (#12844) 2019-09-24 15:54:23 +02:00
Glenn Johnson
10d5e90e65 Add missing dependency to perl-xml-parser (#12903) 
This PR adds the following dependency:

+    depends_on('perl-libwww-perl', type=('build', 'run'))
 2019-09-24 12:51:55 +02:00
Glenn Johnson
fa5a9cd878 Added missing dependencies for perl-list-moreutils (#12900) 
The following dependencies were added:

+    depends_on('perl-exporter-tiny', type=('build', 'run'))
+    depends_on('perl-list-moreutils-xs', type=('build', 'run'))
 2019-09-24 12:45:39 +02:00
Glenn Johnson
b508eaa806 Added depencies to perl-libwww-perl (#12899) 
The following dependencies are needed for perl-libwww-perl according to
https://metacpan.org:

+    depends_on('perl-encode-locale', type=('build', 'run'))
+    depends_on('perl-file-listing', type=('build', 'run'))
+    depends_on('perl-html-parser', type=('build', 'run'))
+    depends_on('perl-http-cookies', type=('build', 'run'))
+    depends_on('perl-http-daemon', type=('build', 'run'))
+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-http-message', type=('build', 'run'))
+    depends_on('perl-http-negotiate', type=('build', 'run'))
+    depends_on('perl-lwp-mediatypes', type=('build', 'run'))
+    depends_on('perl-net-http', type=('build', 'run'))
+    depends_on('perl-try-tiny', type=('build', 'run'))
+    depends_on('perl-uri', type=('build', 'run'))
+    depends_on('perl-www-robotrules', type=('build', 'run'))
 2019-09-24 12:45:02 +02:00
Glenn Johnson
ca11ce06b8 Add missing dependencies to perl-http-daemon (#12898) 
Added the following dependencies:

+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-module-build-tiny', type='build')
 2019-09-24 12:44:28 +02:00
Axel Huebl
1d316c4eb3 spdlog: added version 1.4.1 (#12917) 
Add newest release with ability to pre-build as shared or static
library.
 2019-09-24 12:19:19 +02:00
Adam J. Stewart
53db1eafb9 Fix installation permissions on BLIS and libflame libs (#12919) 
* Fix installation permissions on BLIS and libflame libs

* Fix undefined symbols
 2019-09-23 18:54:47 -05:00
Jed Brown
958b81a564 libceed package: add version 0.5 (#12875) 
Also enable vectorization via -O3 for gcc/clang
 2019-09-23 10:38:44 -07:00
Seth R. Johnson
27d4e9a1d1 QT package: only enable fontconfig when freetype is enabled (#12574) 
The 'fontconfig' option is only valid when freetype is enabled.
 2019-09-23 10:04:29 -07:00
Xavier Delaruelle
53ab298e88 environment-modules: add version 4.3.1 (#12893) 2019-09-21 21:32:27 -05:00
Paul
ef652ee42a czmq package: add autoreconf stage (#12846) 2019-09-20 18:14:41 -07:00
Jordan Ogas
d9c22e3f9c charliecloud package: add version 0.11 and test dependency (#12861) 2019-09-20 18:01:40 -07:00
Sinan
326c2718d5 New package: py-gast (#12874) 2019-09-20 17:59:50 -07:00
t-karatsu
e26b23e980 intel-tbb: fix typo. 2019-09-20 17:53:23 -07:00
Sinan
af8f245f48 py-protobuf package: fix import error for Python 2.x (#12873) 2019-09-20 17:52:11 -07:00
Massimiliano Culpo
7daf860991 targets: adjust packages to use new specific targets semantics 
Seamless translation from 'target=<generic>' to either
- target.family == <generic> (in methods)
- 'target=<generic>:' (in directives)

Also updated docs to show ranges in directives.
 2019-09-20 00:51:37 -07:00
Valentin Clement (バレンタイン クレメン)
83bea039cf CLAW Compiler: added version 2.0.1 (#12878) 2019-09-19 18:27:22 +02:00
Adam J. Stewart
cbbd384628 blis: fix darwin install name (#12869) 2019-09-18 22:46:34 -05:00
Adam J. Stewart
a4e585bad5 googletest: fix darwin install name (#12871) 2019-09-18 22:46:16 -05:00
Adam J. Stewart
964500399b libkml: fix darwin install name (#12872) 2019-09-18 22:44:57 -05:00
Adam J. Stewart
b33d005267 wcslib: fix darwin install name (#12868) 2019-09-18 22:44:38 -05:00
Adam J. Stewart
1fe94748d2 diffutils: add missing libiconv dependency (#12866) 2019-09-18 15:36:41 -05:00
Julien Loiseau
cacbb4ff7a Correcting branch used for FleCSPH (#12865) 2019-09-18 14:00:47 -06:00