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Author SHA1 Message Date
kjrstory
30201e3381 Openfoam: replace two boolean variants with multi-valued variant for precision option (#37736) 2023-06-26 15:43:27 +02:00
Martin Aumüller
501bb88de2 llvm: fix build against libstdc++ 13 (#38329) 
llvm @13-15 is required for ispc, but fails to build with GCC 13.
14.0.6 and 15.0.7 built successfully with upstream patch, 13.0.1
still fails. Thus upstream patch is applied to 14 and 15 only.
 2023-06-26 15:42:25 +02:00
Alex Richert
c5adb05433 ufs-utils: update urls, versions, and dependencies (#37255) 2023-06-26 15:41:38 +02:00
Tamara Dahlgren
8528106484 tests/heffte/tasmanian: convert to new stand-alone test process (#35750) 2023-06-26 15:10:55 +02:00
George Young
134dceb055 cromwell: add v85 (#38427) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-06-26 09:08:34 -04:00
Sergey Kosukhin
aa3744299b netcdf-c: apply patches (#38324) 
* netcdf-c: fix building on macOS

* netcdf-c: add patch fixing multi-threaded HDF5 calls

* netcdf-c: update patch url
 2023-06-26 15:04:12 +02:00
George Young
105ac0c377 mmseqs2: patching to support building with %gcc@13: (#38296) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-06-26 14:59:05 +02:00
Cameron Book
1949f67a71 scotch: add new variants + bison version min. (#37958) 2023-06-26 14:55:21 +02:00
Terry Cojean
0314071763 ginkgo: add version 1.6.0 (#38439) 2023-06-26 14:13:48 +02:00
Annop Wongwathanarat
6e13d7d917 acfl: remove version 23.04 (#38363) 2023-06-26 14:02:17 +02:00
Annop Wongwathanarat
2d4758bdd9 armpl-gcc: remove version 23.04 (#38362) 2023-06-26 14:01:43 +02:00
George Young
ff002316a8 py-python-lzo: add 1.15 (#38418) 
* py-python-lzo: add 1.15

* Update package.py

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-06-26 07:42:39 -04:00
snehring
251282812b demuxlet: add new package (#38425) 2023-06-26 13:17:01 +02:00
SXS Bot
4ac43b5032 spectre: add v2023.06.19 (#38474) 
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
 2023-06-26 13:07:39 +02:00
Tamara Dahlgren
05b6ac16bc tests/*mpi*: convert to new stand-alone test process (#35802) 2023-06-26 12:40:03 +02:00
Xavier Delaruelle
8164712264 Add raw attribute to env.set command (#38465) 
Update `env.set` command and underlying `SetEnv` object to add the `raw`
boolean attribute. `raw` is optional and set to False by default. When
set to True, value format is skipped for object when generating
environment modifications.

With this change it is now possible to define environment variable
whose value contains variable reference syntax (like `{foo}` or `{}`)
that should be set as-is.

Fixes #29578
 2023-06-26 11:55:57 +02:00
Wouter Deconinck
ce0b9ea8cf acts: ensure Python_EXECUTABLE uses ^python when +python (#38540) 
By default, `find_package(Python)` searches from highest version to lowest version, identifying the highest version that satisfies the requirements. This means that `/usr/bin/python3.11` will be found before `$(spack location -i python)/bin/python3.10`, even when other packages have been built with the `python` in spack.

This ensures that the `python` dependency is explicitly the `python` version that is used.
 2023-06-26 11:31:48 +02:00
Adam J. Stewart
c560053c39 py-scipy: add v1.11.0 (#38546) 
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
 2023-06-26 11:30:06 +02:00
Fabien Bruneval
5b0ca6d287 MOLGW: add new package (#37878) 2023-06-26 11:12:03 +02:00
is-a-gamer
887d356e01 bzip2: add pkg-config file (#38355) 
Co-authored-by: HongZhi He <a13041902330@outlook.com>
 2023-06-26 05:02:23 -04:00
Tamara Dahlgren
95ca9dea89 libxml2: convert to new stand-alone test process (#37694) 2023-06-25 01:02:33 -04:00
Cyrus Harrison
cb23362b7f ascent: add optional occa dep (#38426) 
Co-authored-by: cyrush <cyrush@users.noreply.github.com>
 2023-06-24 23:32:34 -04:00
George Young
42c4a8b388 gmap-gsnap: updating to 2023-06-01 (#38428) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-06-24 16:46:37 +02:00
Thomas Madlener
cc1f403385 circe2: add new package (#38491) 2023-06-24 16:32:15 +02:00
snehring
b1d281f197 apptainer: add squashfuse dep (#38499) 2023-06-24 16:02:51 +02:00
Tamara Dahlgren
29a1c418b3 etsf-io: convert to new stand-alone test process (#35746) 2023-06-24 15:59:48 +02:00
Wouter Deconinck
36dd325187 gaudi: new versions 36.[11-14] (#38498) 2023-06-24 15:56:02 +02:00
Tamara Dahlgren
585e150816 hpctoolkit: convert to new stand-alone test process (#35752) 2023-06-24 15:44:14 +02:00
miheer vaidya
9a30ba1a4d clp and osi depend on pkgconfig (#31505) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2023-06-24 15:34:56 +02:00
David Huber
d5bb152165 GSI-ncdiag: add v1.1.0 and v1.1.1. (#38196) 
Co-authored-by: [David Huber] <[david.huber@noaa.gov]>
 2023-06-24 15:29:01 +02:00
Stephen Sachs
0c6d0541f0 Fix syntax to set default target in aws-pcluster pipelines (#38048) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-06-24 15:25:19 +02:00
Dennis Klein
7b977dc103 libzmq: Fix static assertion failure with gcc-13 (#38391) 2023-06-24 13:13:17 +02:00
Matthew Thompson
f98bfebce4 pfunit: fix the max_array_rank variant definition (#38528) develop-2023-06-25 2023-06-24 11:01:21 +02:00
Kapil Arya
4907315079 DMTCP: add v3.0.0. (#38307) 2023-06-24 11:00:20 +02:00
Richard Berger
48168de1cc lammps: new verisons (#38532) 2023-06-24 10:49:18 +02:00
Gurkirat Singh
d99892e490 Fixes openmpi configure args for multinode execution on slurm (#38403) 
Remove `--enable-mca-no-build=btl-uct` check for ucx spec
as it is already fixed in the openmpi open-mpi/ompi#6666
 2023-06-24 10:40:43 +02:00
Chris Green
09d9b48957 range-v3: remove overbroad boost dependence (#38539) 
Co-authored-by: greenc-FNAL <greenc-FNAL@users.noreply.github.com>
 2023-06-24 10:25:39 +02:00
Stephen Hudson
62aa9d87ee libEnsemble: add v0.10.0 (#37954) 
* libEnsemble: add v0.10.0

* Make new deps required

* Fixes to deps

* Update var/spack/repos/builtin/packages/py-libensemble/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix build, run

* Reorder required deps

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-06-23 15:16:53 -05:00
Manuela Kuhn
0470fe545f py-pytest: add 7.3.2 (#38522) 
* py-pytest: add 7.3.2

* [@spackbot] updating style on behalf of manuelakuhn

* Swap py-importlib-metadata dependency order

* Restrict python version for older versions
 2023-06-23 15:07:38 -05:00
mschouler
db8bf333d3 Add recipe for iterative-stats (#38039) 
* Add recipe for iterative-stats

* Fix branch name and remove comment

* Add git link

* Add package maintainer

* Enforce multiple requested changes

* Update var/spack/repos/builtin/packages/py-iterative-stats/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update checksum

* Fix openturns dependency specification

* Add python variant spec to openturns

---------

Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-06-23 15:07:04 -05:00
julian-zeidler
f73c8f2255 Added version 0.33 (#38534) 2023-06-23 14:17:38 -04:00
G-Ragghianti
42ed4d81b7 fix version dependency logic (#38535) 2023-06-23 11:08:56 -07:00
Harmen Stoppels
e76b039997 zlib-ng: add latest, default to drop in replacement of zlib (#37370) 2023-06-23 14:02:38 -04:00
Gurkirat Singh
b49d098e3f Add numa variant in ucx package (#38423) 2023-06-23 07:08:09 -04:00
Harmen Stoppels
cd67b2a1a9 spack buildcache sync (--manifest-glob <glob> | <src> <dest>) are mutually exclusive (#38533) 2023-06-23 12:20:48 +02:00
Manuela Kuhn
a076548bd4 py-pytz: add 2023.3 (#38525) 2023-06-22 23:03:28 -04:00
Juan Miguel Carceller
3d342ac69a py-qmtest: add patch for the removed bdist_wininst class (#38253) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2023-06-22 22:48:24 -04:00
Manuela Kuhn
88fc8ae591 py-python-gitlab: add 3.15.0 (#38524) 2023-06-22 22:43:15 -04:00
Paul R. C. Kent
ff6ac42812 Add 1606 (#38511) 2023-06-22 16:14:25 -07:00
snehring
c96f93b2a3 Emblmygff3 (#38515) 
* py-bcbio-gff: adding new version 0.7.0

* emblmygff3: adding new package

* emblmygff3: adding py-setuptools dep
 2023-06-22 16:50:11 -05:00