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4717 Commits

Author SHA1 Message Date
Christoph Junghans
e3e030cf76 astyle: homepage dead, use mirror (#5483) 2017-09-26 13:03:34 -06:00
Michael Kuhn
86d681be6e snappy: Update to 1.1.7 (#5477) 
Convert to CMakePackage and add a pkg-config file (otherwise libmongoc's
pkg-config file does not contain all required flags).
 2017-09-26 11:00:21 -06:00
Michael Kuhn
733965b3c6 autoconf, automake: Add missing perl dependency (#5187) 
* autoconf, automake: Add missing perl dependency

* automake: Add 1.15.1
 2017-09-26 08:10:22 -06:00
Michael Kuhn
60f8621704 Missing perl dependencies (#5204) 
* glib: Add missing perl dependency

* shared-mime-info: Add missing perl dependency

* libx11: Add missing perl dependency

* likwid: Add missing perl dependency
 2017-09-26 07:27:28 -06:00
lingnanyuan
f3152a5600 r-limma: new package. (#5468) 
* r-limma: Create New Package.

* pr-quantities: add version & py-numpy conflict (#5307)

* r-limma: Create new package.

* r-limma: Correct format.

* Update package.py
 2017-09-25 19:55:03 -06:00
Yifan Zhu
9b2c9bb699 r-affy: created new package (#5471) 2017-09-25 16:57:56 -06:00
lingnanyuan
34d4131284 r-genefilter: New package. (#5467) 
* r-genefilter: Create New Package.

* r-genefilter: Create new package.

* r-genefilter: Correct format.

* Update package.py
 2017-09-25 16:57:17 -06:00
Yifan Zhu
111c216fb7 r-xml: updated url and added version 3.98-1.9 (#5466) 
* r-xml: updated url and added version 3.98-1.9

* Update package.py
 2017-09-25 16:46:01 -06:00
lingnanyuan
8f0fbb4e11 r-multtest: new package. (#5469) 
* r-multtest: Create New Package.

* pr-quantities: add version & py-numpy conflict (#5307)

* r-multtest: Create new package.

* r-multtest: Correct format.
 2017-09-25 16:45:21 -06:00
lingnanyuan
fefb668dcb r-plogr: new package. (#5443) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-plogr:Create new package.

* r-plogr: Correct format.
 2017-09-25 16:42:03 -06:00
lingnanyuan
fafd240c30 r-glmnet: update version. (#5470) 
* r-glmnet: Create New Package.

* pr-quantities: add version & py-numpy conflict (#5307)

* r-glmnet: Update version to 2.0-13

* r-matrix: Update version to 1.2-11

* r-lattice: Update version to 0.20-35.
 2017-09-25 16:39:41 -06:00
lingnanyuan
33adb08672 r-pkgconfig: new package. (#5441) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-pkgconfig: Create new package.

* r-pkgconfig: Correct format.

* r-pkgconfig: Correct format.
 2017-09-25 16:38:45 -06:00
lingnanyuan
eb4ad328ee r-bit64: new package. (#5437) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-bit64: Create new package.

* r-bit64: Correct format.
 2017-09-25 16:38:18 -06:00
lingnanyuan
23235cf3e3 r-annotationdbi: new package (#5408) 
* r-annotationdbi: Create New Package.

* r-iranges: Create new package.

* r-s4vectors: Create new package.

* r-annotationdbi: Create new package.

* r-s4vectors: Delete file.

* r-annotationdbi: Correct format.

* r-iranges: Correct format.
 2017-09-25 16:37:31 -06:00
lingnanyuan
f94b23a249 r-blob: new package. (#5438) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-blob: Create new package.

* r-blob: Correct format.
 2017-09-25 14:41:18 -06:00
Todd Gamblin
13b61913da patch py-mccabe and py-flake8 to not require pytest-runner for install (#5427) 
- Filter the pytest-runner dependency out of setup.py in py-mccabe and
  py-flake8
 2017-09-25 12:46:47 -07:00
Cyrus Harrison
1348fd5648 update for conduit 0.3.0 release (#5421) 
* update for conduit 0.3.0 release

* use mpicxx

* Update package.py
 2017-09-25 12:25:40 -06:00
Axel Huebl
28dd6b378c Fix Protobuf URLs (#5373) 
The default implementation of Package.fetch_remote_versions will take
a URL like https://github.com/google/protobuf/archive/ and automatically
search https://github.com/google/protobuf/releases/ for new package
versions. In the case of protobuf the release/ path contains release
artifacts for a version and the archive/ path contains the desired
source. Since both are associated with the version, and
Package.fetch_remote_versions only stores one URL for a given version,
the two paths are in conflict; previously the URL returned for a
given version was arbitrarily chosen between the two paths. This
updates the definition for the Protobuf package to always search for
URLs in https://github.com/google/protobuf/archive/
 2017-09-25 10:47:55 -07:00
Christoph Junghans
64311e8510 lammps: add support of latte package (#5446) 2017-09-25 09:39:29 -07:00
George Hartzell
e947a0b152 Add info for lmod@7.7 and lmod@7.6.14 (#5450) 
Lightly tested on CentOS 7
 2017-09-25 07:31:43 -06:00
Denis Davydov
330211468a add assimp package. link against it in dealii (#5463) 2017-09-25 06:58:13 -06:00
George Hartzell
99cefcc955 New version for mosh1.3.2 (#5448) 
Required an update to the protobuf digest value, which seems to
be amongst the set creamed by GitHub's change.
 2017-09-24 15:12:35 -06:00
Andrey Prokopenko
6168b7fda8 llvm: patch lldb for gcc-7 (#5239) 2017-09-24 10:24:36 +02:00
Denis Davydov
8db69de258 hdf5: fix macOS build by not using numactl (#5458) 2017-09-23 22:34:00 -06:00
Christoph Junghans
40777e44e2 parsplice: add version 1.1 (#5461) 2017-09-23 20:28:40 -07:00
Denis Davydov
7f84de52a0 blas_lapack: add multithreading variant consistent in all implementations. (#5340) 
* blas_lapack: add multithreading variant

* elemental: update

* intel-mkl: extend to macOS

* rename multithreading to threads

* intel-mkl: avoid long lines

* intel-mkl: make one install error a conflict

* openblas: fix a minor bug in the test
 2017-09-23 13:27:42 -07:00
lingnanyuan
bf2f96ce78 r-rsqlite: Update version to 2.0. (#5444) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-rsqlite: Update version to 2.0
 2017-09-23 15:02:27 +00:00
lingnanyuan
c3a8f10bf9 r-bh: update version. (#5442) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-bh: Update version to 1.65.0-1
 2017-09-23 15:01:35 +00:00
lingnanyuan
8e2351f96c r-memoise: update version. (#5440) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-memoise: Update version to 1.1.0
 2017-09-23 15:00:50 +00:00
lingnanyuan
9fdcc147a7 r-tibble: update version. (#5439) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-tibble: Update version to 1.3.4
 2017-09-23 15:00:02 +00:00
lingnanyuan
c6a3f4cf9b r-bit: new package. (#5436) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-bit: Create new package.
 2017-09-23 14:59:09 +00:00
lingnanyuan
debc492032 r-assertthat: update version to 0.2.0 (#5435) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-assertthat: Update version to 0.2.0
 2017-09-23 14:58:53 +00:00
Yifan Zhu
72bb53c018 r-preprocesscore: created new package (#5434) 2017-09-23 14:58:24 +00:00
Yifan Zhu
6134e94ede r-affyio: created new package (#5433) 2017-09-23 14:58:06 +00:00
Yifan Zhu
d2c65247b0 r-xvector: created new package (#5432) 2017-09-23 14:57:31 +00:00
Denis Davydov
4c20d9917e superlu-dist: fix has after 09/17/2017 update (#5457) 2017-09-23 12:50:02 +00:00
George Hartzell
d12f52b37a tmux: add version 2.5 (#5449) 2017-09-22 19:30:47 -07:00
George Hartzell
6e20dd61c0 Ack: add version 2.18 (#5445) 2017-09-22 19:30:12 -07:00
George Hartzell
e43ea22e45 Add info for httpie@0.9.9 (#5451) 
Lightly tested on CentOS 7.
 2017-09-23 00:40:22 +00:00
George Hartzell
6ac28c1daa Add info for lftp@4.8.1 (#5452) 
Lightly tested on CentOS 7.
 2017-09-23 00:39:49 +00:00
George Hartzell
315d844ab7 Update git to @2.14.1, requires pcre+jit variant (#5430) 
Update the git package to git@2.14.1.

This requires a pcre that has been built with `--enable-jit`, so this
adds a variant to pcre to support that and arranges so that git versions
before 2.14 depend on pcre and git 2.14 and after depend on pcre+jit.
 2017-09-22 16:43:45 -07:00
George Hartzell
fd552ab2b9 git-lfs: add 2.2.1 and 2.3.0 (#5429) 2017-09-22 16:36:57 -07:00
George Hartzell
e176c3a3c5 emacs: add version 25.3 (security update) (#5447) 
25.3 is a security update. Info here:
https://lists.gnu.org/archive/html/info-gnu/2017-09/msg00006.html

Build both +X and ~X on CentOS 7 and lightly tested.
 2017-09-22 16:34:59 -07:00
Massimiliano Culpo
f1fbcfa971 plumed: fixed possible linking issue (#5425) 
Due to the logic in configure.ac, we may be using both the system
linker (LD_RO='ld -r -o') and the linker tied to the compiler (LD=$CXX).
This may produce weird link-time errors when the two executables are
not the same.

The PR works around the issue disabling 'ld -r'
 2017-09-22 21:14:53 +02:00
Howard Pritchard
a646ec1fff PMIx: add PMIx package to Spack (#5426) 
Open MPI has been relying on versions of PMIx since the 2.0.0
release.  Although the embedded version can be used, it makes
more sense long term for Spack to know about the PMIx package,
and to build Open MPI against PMIx as an external package.

There are other software components that may eventually be
reliant on PMIx including MPICH, GASNet, the OpenSHMEM reference
implementation, etc.

This is also partly motivated by the desire to have ECP ST
projects to be released through Spack.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-09-22 11:27:28 -06:00
sknigh
7b4d8d6d1e Version fixes for py-csvkit (#5393) 2017-09-22 10:06:15 -07:00
healther
6ff57bde42 Add package py-memory-profiler (#5413) 
* add package memory profiler

* fix FIXME
 2017-09-21 20:00:09 -06:00
Yifan Zhu
77f2221177 r-s4vectors: created new package (#5419) 
* r-s4vecors: created new package

* Update package.py

* edited according to flake8
 2017-09-21 19:57:02 -06:00
Mike Pozulp
2ad3a1bff7 Update pic/shared variants for hdf5, python, silo (#5423) 2017-09-21 18:14:31 -07:00
lingnanyuan
3817111454 r-mpm: new package. (#5416) 2017-09-21 13:36:51 -07:00