3508909f06
4 Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
Barry Smith
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d04ae9a2b4 |
xsdk version 0.2.0 (#3928)
* xSDK: a bundle/meta package that simple installs a series of packages with suitable specs This is based on struggles with previous attempts at such a bundler Funded-by: IDEAS Project: IDEAS/xSDK Time: 12 hours * PETSc needs c++11 when built with Trilinos * Added alquimia package * remove direct setting of cpp in petsc/package.py since it doesn't work on some systems. Funded-by: IDEAS Project: IDEAS/xSDK Time: .3 hours Reported-by: Mark A. Berrill <berrillma@ornl.gov> * provide the MPI compilers to PETSc configure with --with-cc etc instead of --with-mpi-dir Funded-by: IDEAS Project: IDEAS/xSDK * Spack bug fix issue #3144 String could contain /n which resulting in spack generating warning message to stderr on each use of compiler which configure interpreted as failing compiler Thanks-to: Mark A. Berrill <berrillma@ornl.gov> * Fixed alquimia package Alquimia expects PETSC_DIR and PETSC_ARCH to be defined, and refuses to install if they are not. Spack does not define PETSC_ ARCH, so Alquimia will not install. This patch does two things to fix the alquimia build: 1. A patch has been added to remove the dependency on PETSC_ARCH. 2. Alquimia currently depends on old versions of PETSc and pflotran. @ghammond86 updated the alquimia interfaces to use more recent versions, but his patch is still sitting in an alquimia pull request. As a result, the spack installer now uses his fork of alquimia. This is a temporary fix until his pull request is accepted. * Need to pass to Alquimia the MPI compilers, not the raw compilers Otherwise the PETSc tests do not produce executables that can run because they are not linked against MPI libraries Funded-by: IDEAS Project: IDEAS/xSDK Time: .5 hours * Add alquimia to xSDK build Funded-by: IDEAS Project: IDEAS/xSDK * Fix flake8 errors for xsdk packages * Add xsdk support for xsdk version xsdk-0.2.0 Note that currently it is just dummy code, but will eventually use a xsdk-0.2.0 tag for each package it installs. Funded-by: IDEAS Project: IDEAS/xSDK Time: .7 hours * Do not build Mumps by default for PETSc since it is not portable, for example to Cray Allow alquimia to accept PETSc even if the PETSc test executable cannot run since this is a problem on Cray. Reported-by: Alicia Marie Klinvex <amklinv@sandia.gov> * Add xsdk-0.2.0-rc1 tag for xsdk-0.2.0 installs * Switch alquimia download site back to standard location since they have incorporated Glenn Hammond's fixes Also it no longer needs the patch to the Alquimia cmake Funded-by: IDEAS Project: IDEAS/xSDK Reported-by: Sergi Molins Rafa <smolins@lbl.gov> * update hypre to use the latest release candidate for xsdk 0.2.0 Funded-by: IDEAS Project: IDEAS/xSDK Reported-by: Ulrike Meier Yang <yang11@llnl.gov> * Re-added patch to alquimia The patch was out of date and has been updated accordingly. * Added Tpetra-free option to Trilinos The Tpetra stack takes forever to build and is not used by any of the IDEAS teams, so there should be an option to disable it. I have added this option and updated the xSDK accordingly. I also disabled xSDKTrilinos in the xSDK, since none of the apps teams currently use it, and it's largely Tpetra-based. * Removed alquimia patch from develop version The patch has been incorporated into alquimia and is no longer necessary for the develop version. The tagged version has not been updated accordingly and still needs the patch for now. (When the tagged version gets updated, the patch does need to be removed from spack altogether, or it will break the build.) * Removed patch from alquimia It has been incorporated into alquimia, both the develop and rc2 tagged versions. The 0.2.0 version of alquimia has been updated to tag rc2 rather than rc1. * update xsdk-0.2.0 to depend on PETSc xsdk-0.2.0-rc2 which fixes for Apple xcode 8.3 Commit-type: bug-fix Funded-by: IDEAS Project: IDEAS/xSDK * import sys got lost in merge with develop * Update xsdk packages to use xsdk-0.2.0 tag Commit-type: feature Funded-by: IDEAS Project: ECP * Fixes for Flake8 note, had to ignore some long lines due to a single string * simple improvements to XDK packages as suggested by Spack pull request reviewers Commit-type: style-fix Funded-by: IDEAS Project: xSDK * Removed unneeded : after develop as requested by Denis Davydov in pull request review Commit-type: style-fix Funded-by: IDEAS Project: xSDK Thanks-to: Denis Davydov * Removed change that may not be needed due to updates in PETSc spack file such as using mpicc etc directly Commit-type: bug-fix Funded-by: IDEAS Project: xSDK Thanks-to: Adam J. Stewart * Do not turn on xSDKTrilinos for xSDK builds since it requires tpetra Commit-type: bug-fix Funded-by: IDEAS Project: xSDK * comment why MUMPS is disabled by default for PETSc so that others won't try to enable it when modifying petsc package next time Commit-type: documentation Funded-by: IDEAS Project: xSDK Thanks-to: Denis Davydov |
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Adam J. Stewart
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50df071ad9 |
Overhaul Spack's URL parsing (#2972)
* Remove fake URLs from Spack * Ignore long lines for URLs that start with ftp: * Preliminary changes to version regexes * New redesign of version regexes * Allow letters in version-only * Fix detection of versions that end in Final * Rearrange a few regexes and add examples * Add tests for common download repositories * Add test cases for common tarball naming schemes * Finalize version regexes * spack url test -> spack url summary * Clean up comments * Rearrange suffix checks * Use query strings for name detection * Remove no longer necessary url_for_version functions * Strip off extraneous information after package name * Add one more test * Dot in square brackets does not need to be escaped * Move renaming outside of parse_name_offset * Fix versions for a couple more packages * Fix flake8 and doc tests * Correctly parse Python, Lua, and Bio++ package names * Use effective URLs for mfem * Add checksummed version to mitos * Remove url_for_version from STAR-CCM+ package * Revert changes to version numbers with underscores and dashes * Fix name detection for tbb * Correctly parse Ruby gems * Reverted mfem back to shortened URLs. * Updated instructions for better security * Remove preferred=True from newest version * Add tests for new `spack url list` flags * Add tests for strip_name_suffixes * Add unit tests for version separators * Fix bugs related to parseable name but in parseable version * Remove dead code, update docstring * Ignore 'binary' at end of version string * Remove platform from version * Flip libedit version numbers * Re-support weird NCO alpha/beta versions * Rebase and remove one new fake URL * Add / to beginning of regex to avoid picking up similarly named packages * Ignore weird tar versions * Fix bug in url parse --spider when no versions found * Less strict version matching for spack versions * Don't rename Python packages * Be a little more selective, version must begin with a digit * Re-add fake URLs * Fix up several other packages * Ignore more file endings * Add parsing support for Miniconda * Update tab completion * XFAILS are now PASSES for 2 web tests |
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Adam J. Stewart
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f2d4c15395 | Remove cmake build dep from CMakePackages (#2684) | ||
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amklinv
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f613445eb2 |
Added support for xSDKTrilinos package (#2201)
* Added support for xSDKTrilinos package * Updated xsdktrilinos/package.py for PR review * Added trilinos version # reqs to xsdktrilinos * xsdktrilinos now uses CMakePackage * Cleaned up xsdktrilinos/package.py * Removed unused cxxflags from xsdktrilinos * Removed unused sys import from xsdktrilinos |