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Author SHA1 Message Date
Denis Davydov
e9c66a76f0 dealii: add scalapack and various cleanups (#6552) 2017-12-04 08:02:05 +01:00
Chien-Chang Feng
f564e02301 py-h5py: fixed a typo in the name of a dependency (#6540) 2017-12-04 07:50:35 +01:00
Benedikt Riedel
6887107775 Adding zlib dependence to xrootd to resolve #6545 (#6550) 2017-12-03 16:22:44 -07:00
Eric
10ad2bc1bf py-multiqc: Add version 1.3 (#6554) 2017-12-03 16:21:27 -07:00
Yifan Zhu
1e702bfab0 r-fftwtools: new package (#6532) 2017-12-03 16:20:32 -07:00
Paschalis Korosoglou
79751729c9 Rename variant static to shared (#6543) 2017-12-03 16:19:32 -07:00
Denis Davydov
13dade60dd gcc: remove all variant (#5283) 2017-12-03 10:19:55 +01:00
Nils Deppe
07fcd0d115 Add Kvasir MPL (#6529) 2017-12-02 16:02:43 -07:00
Eric
6918ee3767 salmon: Add version 0.9.1 (#6516) 2017-12-02 12:45:10 -07:00
sknigh
80048ae4a9 Paraview expects qt to have opengl (#6520) 2017-12-01 13:46:39 -07:00
Patrick Gartung
f6c99d7beb Buildcache: relocate fixes (#6512) 
* Updated function which checks if a binary file needs relocation.
  Previously this was incorrectly identifying ELF binaries as symbolic
  links (so they were being excluded from relocation). Added test to
  check that ELF binaries are not considered symlinks.

* relocate_text was not replacing paths in text files. Added test to
  check that text files are relocated properly (i.e. paths in the file
  are converted to the new prefix).

* Exclude backup files created by filter_file when installing from
  binary cache.

* Update write_buildinfo_file method signature to distinguish between
  the spec prefix and the working directory for the binary cache
  package.
 2017-12-01 11:15:16 -08:00
Axel Huebl
d6863a2940 ADIOS: 1.13.0 (#6539) 
New release of ADIOS: 1.13.0.
 2017-12-01 11:09:37 -07:00
Stephen Hudson
d5c96dbd94 Add new package py-libensemble (#6525) 2017-12-01 11:01:08 -07:00
Eric
fa32f8f914 py-dendropy: Create new package (#6528) 2017-12-01 11:00:45 -07:00
Adam J. Stewart
0ffd7f8918 Remove reference to deprecated spack md5 command (#6537) 2017-12-01 14:31:40 +01:00
Paschalis Korosoglou
bd94be818a Added variant static for hwloc (#6538) 2017-12-01 06:25:23 -07:00
Yifan Zhu
e0264404b6 r-udunits2: new package r-udunits2 (#6533) 2017-12-01 11:16:35 +01:00
Yifan Zhu
4a55f81051 r-units: new package (#6531) 2017-12-01 05:26:05 +01:00
Massimiliano Culpo
23b1108451 gpg creation: added suggestion on how to set-up rngd (#6483) 2017-11-30 10:51:55 -08:00
Massimiliano Culpo
f7c0e24f0a 'spack install': make conflict messages as verbose as 'spack spec' (#6436) 
"spack spec" was providing helpful error information about conflicts
that was missing from "spack install", this updates "spack install"
to provide the same information.
 2017-11-30 10:41:24 -08:00
Adam J. Stewart
3dafbe901a Fix CGAL checksum and switch to more stable URL (#6511) 2017-11-30 09:18:54 +01:00
healther
130c56dbaa add package py-lazy-object-proxy (#6489) 2017-11-30 09:17:28 +01:00
lingnanyuan
5382279fa6 r-biomformat: Create new package. (#6517) 2017-11-30 09:14:12 +01:00
lingnanyuan
f9c820c39f r-phyloseq: Create new package. (#6518) 2017-11-30 09:13:31 +01:00
Yifan Zhu
86fbcc7140 r-nanotime: new package (#6519) 2017-11-30 09:12:58 +01:00
Michael Bentley
a097524281 Flit package (#6260) 
Add initial build support for version 2.0-alpha.1
 2017-11-30 09:05:40 +01:00
David Lukes
27b929bfe2 Improve docstring of spack.directives.extend (#6485) 
The original docstring had confusing wording re: what is going to
symlinked and where when using the `extend` directive, and how exactly
the symlinking is performed (not automatically on install, but using
`spack activate`). See #5559.
 2017-11-29 14:30:42 -08:00
Massimiliano Culpo
aa24858648 travis: removed /usr/local/include/c++ before installing gcc on OSX (#6515) 
"brew install gcc" fails for travis build because of an existing
/usr/local/include/c++. This commit removes the offending file
as suggested by brew.
 2017-11-29 11:33:00 -08:00
Stephen Hudson
02371d2ace Add new package nlopt (#6499) 2017-11-29 10:27:08 +01:00
healther
cc5d5295bd add missing build dependency to py-pytest-runner (#6490) 2017-11-28 16:52:18 -07:00
Yan Grange
b5f3ecf3fa Update globus package version and hash (#6482) 2017-11-28 16:51:35 -07:00
Michael Kuhn
9adcb0b4b1 libmongoc: Fix pkg-config file not containing snappy and zlib paths (#6467) 2017-11-28 16:47:12 -07:00
healther
f7fda19f5d remove breaking version and cleanup of dependencies (#6494) 2017-11-28 16:46:23 -07:00
healther
8013996661 add conflicts to py-enum34 (#6496) 2017-11-28 16:45:08 -07:00
healther
2190ae43a5 Fix astroid dependency and mark broken version (#6493) 2017-11-28 16:43:43 -07:00
healther
cab07d2562 add package py-editdistance (#6492) 2017-11-28 16:43:00 -07:00
healther
82adc403ad add package py-isort (#6491) 2017-11-28 16:42:47 -07:00
healther
64b121fa87 add package: py-backports-functools-lru-cache (#6488) 2017-11-28 13:54:40 -08:00
Adam J. Stewart
e01a16b992 Remove spack md5 and sha256 commands (#6428) 2017-11-28 13:41:46 -08:00
healther
dc8f587b61 add path to package.py in case of a syntax error (#6458) 2017-11-28 13:32:21 -08:00
becker33
acd80b16a8 update scr package for cray (#6407) 
* update scr package for cray

* added info on scr version 1.2.0
 2017-11-28 10:33:45 -08:00
Massimiliano Culpo
f6ead27b5b spack spec: don't show normalize + no hash for non concrete specs (#6417) 
Showing "Normalize" on output doesn't give users additional information,
as this step is essentially an implementation detail of concretization.
This PR skips it and shows just the input spec and the concretized one.

Printing partial hashes for input spec has been disabled.
 2017-11-28 09:03:32 -08:00
Denis Davydov
ddb55c2b26 py-numpy: add 1.13.3 (#6484) 2017-11-28 13:42:59 +01:00
Denis Davydov
fdb2386ba7 pi-scipy: add 1.0.0 (#6486) 2017-11-28 13:42:27 +01:00
Yifan Zhu
bec8ddcf81 r-classint: created new package (#6481) 2017-11-28 09:29:29 +01:00
Yifan Zhu
5cdf94233b r-rcppcctz: created new package (#6480) 2017-11-28 09:28:42 +01:00
lingnanyuan
8d64e192dc r-topgo: Create new package. (#6479) 2017-11-28 09:27:36 +01:00
Eric
6edd782d39 r-seurat: Create new package (#6477) 2017-11-28 09:27:14 +01:00
Eric
7f43411e59 Adding list_url to several R module packages (#6474) 2017-11-28 09:26:06 +01:00
Yifan Zhu
63a23b93c5 r-cli: new package (#6476) 2017-11-28 09:21:12 +01:00