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1024 Commits

Author SHA1 Message Date
Massimiliano Culpo
e20c05fcdf Make "minimal" the default duplicate strategy (#39621) 
* Allow branching out of the "generic build" unification set

For cases like the one in https://github.com/spack/spack/pull/39661
we need to relax rules on unification sets.

The issue is that, right now, nodes in the "generic build" unification
set are unified together with their build dependencies. This was done
out of caution to avoid the risk of circular dependencies, which would
ultimately cause a very slow solve.

For build-tools like Cython, however, the build dependencies is masked
by a long chain of "build, run" dependencies that belong in the
"generic build" unification space.

To allow splitting on cases like this, we relax the rule disallowing
branching out of the "generic build" unification set.

* Fix issue with pure build virtual dependencies

Pure build virtual dependencies were not accounted properly in the
list of possible virtuals. This caused some facts connecting virtuals
to the corresponding providers to not be emitted, and in the end
lead to unsat problems.

* Fixed a few issues in packages

py-gevent: restore dependency on py-cython@3
jsoncpp: fix typo in build dependency
ecp-data-vis-sdk: update spack.yaml and cmake recipe
py-statsmodels: add v0.13.5

* Make dependency on "blt" of type "build"
 2023-10-06 10:24:21 +02:00
dependabot[bot]
f2230100ac build(deps): bump urllib3 from 2.0.5 to 2.0.6 in /lib/spack/docs (#40286) 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.5 to 2.0.6.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/v2.0.5...2.0.6)

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 2023-10-03 12:27:36 +02:00
Todd Gamblin
9e54134daf docs: Replace package list with packages.spack.io (#40251) 
For a long time, the docs have generated a huge, static HTML package list. It has some
disadvantages:

* It's slow to load
* It's slow to build
* It's hard to search

We now have a nice website that can tell us about Spack packages, and it's searchable so
users can easily find the one or two packages out of 7400 that they're looking for. We
should link to this instead of including a static package list page in the docs.

- [x] Replace package list link with link to packages.spack.io
- [x] Remove `package_list.html` generation from `conf.py`.
- [x] Add a new section for "Links" to the docs.
- [x] Remove docstring notes from contribution guide (we haven't generated RST
      for package docstrings for a while)
- [x] Remove referencese to `package-list` from docs.
 2023-10-01 05:36:22 +02:00
Massimiliano Culpo
210d221357 Test package detection in a systematic way (#18175) 
This PR adds a new audit sub-command to check that detection of relevant packages
is performed correctly in a few scenarios mocking real use-cases. The data for each 
package being tested is in a YAML file called detection_test.yaml alongside the 
corresponding package.py file.

This is to allow encoding detection tests for compilers and other widely used tools, 
in preparation for compilers as dependencies.
 2023-09-29 10:24:42 +02:00
dependabot[bot]
37c48fc82c build(deps): bump urllib3 from 2.0.4 to 2.0.5 in /lib/spack/docs (#40119) 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.4 to 2.0.5.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.4...v2.0.5)

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 2023-09-24 17:35:48 +02:00
dependabot[bot]
74a6c48d96 build(deps): bump sphinx from 7.2.5 to 7.2.6 in /lib/spack/docs (#40029) 
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.5 to 7.2.6.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.5...v7.2.6)

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 2023-09-15 09:51:51 +02:00
Massimiliano Culpo
c4e2d24ca9 Spec.tree: add type hints (#39948) 2023-09-13 11:53:14 +02:00
dependabot[bot]
28a3be3eca build(deps): bump black from 23.7.0 to 23.9.1 in /lib/spack/docs (#39937) 
Bumps [black](https://github.com/psf/black) from 23.7.0 to 23.9.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.7.0...23.9.1)

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 2023-09-12 07:44:19 +02:00
dependabot[bot]
a4d2f8332f build(deps): bump pytest from 7.4.1 to 7.4.2 in /lib/spack/docs (#39883) 
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.1 to 7.4.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.1...7.4.2)

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 2023-09-08 08:16:19 +02:00
Tamara Dahlgren
007f02e06a Docs/Packaging guide: Add BundlePackage (#39691) 
* Docs/Packaging guide: Add BundlePackage
* Adjusted version ordering note to reflect convention.
 2023-09-07 19:45:51 -07:00
dependabot[bot]
189cd59d13 build(deps): bump pytest from 7.4.0 to 7.4.1 in /lib/spack/docs (#39790) 
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.0 to 7.4.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.0...7.4.1)

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 2023-09-05 09:51:41 +02:00
dependabot[bot]
ecb7ad493f build(deps): bump sphinx from 7.2.4 to 7.2.5 in /lib/spack/docs (#39716) 
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.4 to 7.2.5.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.4...v7.2.5)

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 2023-08-31 10:40:33 +02:00
dependabot[bot]
ffddaabaa0 build(deps): bump sphinx from 7.2.3 to 7.2.4 in /lib/spack/docs (#39668) 
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.3 to 7.2.4.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.3...v7.2.4)

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 2023-08-29 14:45:06 +02:00
Peter Scheibel
95f78440f1 External ROCm: add example configuration (#39602) 
* add an example of an external rocm configuration
* include more info
* generalize section to all GPU support
 2023-08-26 15:46:25 -07:00
dependabot[bot]
ca1e4d54b5 build(deps): bump sphinx from 7.2.2 to 7.2.3 in /lib/spack/docs (#39603) 
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.2 to 7.2.3.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.2...v7.2.3)

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 2023-08-24 07:55:14 +02:00
Tamara Dahlgren
3f5f4cfe26 docs: API, f-string, and path updates to test section (#39584) 2023-08-23 09:22:25 +02:00
dependabot[bot]
afebc11742 Bump sphinx from 6.2.1 to 7.2.2 in /lib/spack/docs (#39502) 
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 6.2.1 to 7.2.2.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v6.2.1...v7.2.2)

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  update-type: version-update:semver-major
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 2023-08-22 12:02:58 +02:00
dependabot[bot]
1d8ff7f742 Bump sphinx-rtd-theme from 1.2.2 to 1.3.0 in /lib/spack/docs (#39562) 
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) from 1.2.2 to 1.3.0.
- [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst)
- [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.2.2...1.3.0)

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 2023-08-22 09:32:39 +02:00
dependabot[bot]
b19691d503 Bump mypy from 1.5.0 to 1.5.1 in /lib/spack/docs (#39478) 
Bumps [mypy](https://github.com/python/mypy) from 1.5.0 to 1.5.1.
- [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1)

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 2023-08-17 12:35:49 +02:00
dependabot[bot]
c764f9b1ab build(deps): bump mypy from 1.4.1 to 1.5.0 in /lib/spack/docs (#39383) 
Bumps [mypy](https://github.com/python/mypy) from 1.4.1 to 1.5.0.
- [Commits](https://github.com/python/mypy/compare/v1.4.1...v1.5.0)

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 2023-08-11 08:01:34 +02:00
dependabot[bot]
37634f8b08 build(deps): bump pygments from 2.15.1 to 2.16.1 in /lib/spack/docs (#39365) 
Bumps [pygments](https://github.com/pygments/pygments) from 2.15.1 to 2.16.1.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.15.1...2.16.1)

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 2023-08-10 18:10:32 +02:00
dependabot[bot]
3f83ef6566 build(deps): bump flake8 from 6.0.0 to 6.1.0 in /lib/spack/docs (#39366) 
Bumps [flake8](https://github.com/pycqa/flake8) from 6.0.0 to 6.1.0.
- [Commits](https://github.com/pycqa/flake8/compare/6.0.0...6.1.0)

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 2023-08-10 05:34:33 -04:00
dependabot[bot]
554ce7f063 build(deps): bump sphinx-design from 0.4.1 to 0.5.0 in /lib/spack/docs (#39367) 
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.4.1 to 0.5.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.4.1...v0.5.0)

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 2023-08-10 05:29:52 -04:00
dependabot[bot]
a3c7ad7669 build(deps): bump urllib3 from 2.0.3 to 2.0.4 in /lib/spack/docs (#39002) 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.3 to 2.0.4.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.3...2.0.4)

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 2023-08-10 05:04:58 +00:00
Andrey Parfenov
b1e33ae37b add info about devito and qe for intel env (#39357) 
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
 2023-08-09 12:47:35 -04:00
dependabot[bot]
deadb64206 build(deps): bump black from 23.1.0 to 23.7.0 in /lib/spack/docs (#38982) 
Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.7.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.1.0...23.7.0)

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 2023-08-09 17:19:49 +02:00
Harmen Stoppels
e51748ee8f zlib-api: new virtual with zlib/zlib-ng as providers (#37372) 
Introduces a new virtual zlib-api, which replaces zlib in most packages.

This allows users to switch to zlib-ng by default for better performance.
 2023-08-09 09:22:58 -04:00
Jonathon Anderson
9aa3b4619b containerize: ensure bootstrap images contain all system dependencies (#36818) 
This also makes `spack bootstrap status` exit 1 if some dependency is missing
 2023-08-09 09:46:59 +02:00
Adam J. Stewart
4eed832653 py-pyqt6: add new package (#32696) 2023-08-04 18:49:54 -05:00
Harmen Stoppels
03c0d74139 buildcache extractall: extract directly into spec.prefix (#37441) 
- Run `mkdirp` on `spec.prefix`
- Extract directly into `spec.prefix`
  1. No need for `$store/tmp.xxx` where we extract the tarball directly, pray that it has one subdir `<name>-<version>-<hash>`, and then `rm -rf` the package prefix followed by `mv`.
  2. No need to clean up this temp dir in `spack clean`.
  3. Instead figure out package directory prefix from the tarball contents, and strip the tarinfo entries accordingly (kinda like tar --strip-components but more strict)
- Set package dir permissions
- Don't error during error handling when files cannot removed
- No need to "enrich" spec.json with this tarball-toplevel-path

After this PR, we can in fact tarball packages relative to `/` instead of `spec.prefix/..`, which makes it possible to use Spack tarballs as container layers, where relocation is impossible, and rootfs tarballs are expected.
 2023-08-02 17:06:13 +02:00
Ashwin Kumar Karnad
399271832b Fix typo: binary_caches.rst (#39064) 2023-07-24 15:09:34 +02:00
Ashwin Kumar Karnad
405f563909 binary_caches.rst: fix typo (#39030) 2023-07-21 10:39:53 +02:00
Harmen Stoppels
3fef586cfb binary cache docs: remove redundant flag and comment (#38960) 2023-07-18 22:38:04 +02:00
Massimiliano Culpo
ad1fdcdf48 Pin Spack dev dependencies on RtD (#38950) 2023-07-18 18:37:04 +02:00
Xavier Delaruelle
8c7adbf8f3 modules: add support for conflict in lua modulefile (#36701) 
Add support for conflict directives in Lua modulefile like done for Tcl
modulefile.

Note that conflicts are correctly honored on Lmod and Environment
Modules <4.2 only if mutually expressed on both modulefiles that
conflict with each other.

Migrate conflict code from Tcl-specific classes to the common part. Add
tests for Lmod and split the conflict test case in two.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-07-18 10:24:46 +02:00
Massimiliano Culpo
53ae969aa0 Lock, database and store don't need global configuration on construction (#33495) 
Lock objects can now be instantiated independently,
without being tied to the global configuration. The
same is true for database and store objects.

The database __init__ method has been simplified to
take a single lock configuration object. Some common
lock configurations (e.g. NO_LOCK or NO_TIMEOUT) have
been named and are provided as globals.

The use_store context manager keeps the configuration
consistent by pushing and popping an internal scope.
It can also be tuned by passing extra data to set up
e.g. upstreams or anything else that might be related
to the store.
 2023-07-17 16:51:04 +02:00
Michael Fink
c8026c3c87 Add path to MPI executables to ^mpi dependents (#35758) 2023-07-12 13:58:43 -05:00
Michael Kuhn
d5d0b8821c installer: Improve status reporting (#37903) 
Refactor `TermTitle` into `InstallStatus` and use it to show progress
information both in the terminal title as well as inline. This also
turns on the terminal title status by default.

The inline output will look like the following after this change:
```
==> Installing m4-1.4.19-w2fxrpuz64zdq63woprqfxxzc3tzu7p3 [4/4]
```
 2023-07-12 08:54:45 +02:00
Andrey Parfenov
ae00d7c358 add info about spack env from spack-configs for oneAPI build tools (#38751) 
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
 2023-07-07 03:47:54 +00:00
Adam J. Stewart
45838cee0b Drop Python 2 super syntax (#38718) 2023-07-05 09:04:29 -05:00
Adam J. Stewart
63576275be SIPPackage: documentation fix (#38672) 2023-07-02 11:30:08 +02:00
Gurkirat Singh
69a5c55702 docs: add quotes around some values in a YAML example (#38412) 2023-06-16 10:29:09 +02:00
dependabot[bot]
6979d6a96f build(deps): bump python-levenshtein in /lib/spack/docs (#38339) 
Bumps [python-levenshtein](https://github.com/maxbachmann/python-Levenshtein) from 0.21.0 to 0.21.1.
- [Release notes](https://github.com/maxbachmann/python-Levenshtein/releases)
- [Changelog](https://github.com/maxbachmann/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/maxbachmann/python-Levenshtein/compare/v0.21.0...v0.21.1)

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 2023-06-14 13:03:15 +02:00
Harmen Stoppels
da45073ef9 buildcache: remove deprecated api (#37246) 
The API was deprecated in v0.20 and is slated for removal in v0.21
 2023-06-12 14:33:26 +02:00
Christopher Christofi
7fa3c7f0fa Fix typo in example code block (#38318) 2023-06-11 22:12:36 -04:00
dependabot[bot]
7896625919 build(deps): bump urllib3 from 2.0.2 to 2.0.3 in /lib/spack/docs (#38244) 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.2 to 2.0.3.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.2...2.0.3)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-06-11 13:35:22 -05:00
dependabot[bot]
fb43cb8166 build(deps): bump sphinx-rtd-theme in /lib/spack/docs (#38245) 
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) from 1.2.1 to 1.2.2.
- [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst)
- [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.2.1...1.2.2)

---
updated-dependencies:
- dependency-name: sphinx-rtd-theme
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-06-11 13:35:03 -05:00
Christopher Kotfila
785c1a2070 Add documentation about package signing model (#30939) 
Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-06-07 23:05:44 +02:00
Jonathon Anderson
f41446258a containers: don't install epel-release on Fedora (#37766) 2023-06-06 21:50:46 +02:00
Massimiliano Culpo
e483762015 Update RtD and Sphinx configuration (#38046) 2023-06-05 17:39:11 +02:00