Commit Graph

20843 Commits

Author SHA1 Message Date
Keita Iwabuchi
5f7f8ce1eb
Metall package: add v0.21 (#31482)
* Metall package: add dependency to GCC for build test

* Package Metall: add v.017

* Package Metall: update the package file

* Update var/spack/repos/builtin/packages/metall/package.py

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>

* Metall package: add v0.18 and v0.19

* Metall Package: add v0.20

* Metall package: add v0.21

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-07-11 14:54:57 -07:00
Richard Berger
ac09607a5a
ports-of-call: new version 1.2.0, simplify (#31485) 2022-07-11 14:53:36 -07:00
miheer vaidya
e0bbf26f1f
[cppcodec] new package (#31506) 2022-07-11 14:11:24 -07:00
Adam J. Stewart
1d827a9ff6
py-mypy: add v0.961 (#31503) 2022-07-11 12:34:09 -07:00
Adam J. Stewart
ba0cff1831
py-gpytorch: add v1.7.0 (#31504) 2022-07-11 12:30:58 -07:00
Adam J. Stewart
12699787e7
py-numpy: add v1.23.1 (#31510)
* py-numpy: add v1.23.1

* Remove packaging dep
2022-07-11 10:47:20 -07:00
Adam J. Stewart
c020894f36
py-torchgeo: add v0.3.0 (#31514) 2022-07-11 10:10:30 -07:00
Carlos Bederián
05a32b5cf5
ucx: add 1.13.0 (#31517) 2022-07-11 10:06:33 -07:00
Michael Kuhn
359d094528
julia: fix patch (#31515) 2022-07-11 16:13:47 +02:00
Harmen Stoppels
92dfe7f25b
man-db: Don't use DESTDIR (#31492) 2022-07-10 21:41:55 +02:00
Erik Schnetter
2159ce036e
openssl: New version 1.1.1q (#31487) 2022-07-08 13:25:43 -06:00
Adam J. Stewart
7e6dbfb185
py-setuptools: add v63.0.0 (#31444) 2022-07-08 10:41:15 -07:00
Harmen Stoppels
4043b13d59
vim: deprecate 9.0.0000, add 9.0.0045 (#31490) 2022-07-08 10:16:50 +00:00
Luke Diorio-Toth
ec7513c8b5
py-panaroo, py-edlib, and py-intbitset: new packages (#31452) 2022-07-07 18:13:39 -06:00
Erin Newcomer
44b48cfe46
Package/py phylophlan (#31422)
* py-phylophlan: new package

* py-phyloseq: new package

* py-phylophlan: style fix

* py-phylophlan: fixed dependencies

* py-phylophlan: style fix
2022-07-07 14:06:55 -07:00
Tamara Dahlgren
a12ce9fd59
OpenBabel: Make building with GUI an option (#31456) 2022-07-07 09:43:17 -07:00
Stephen Sachs
626b239c96
[py-distributed] Add version 2022.2.1 (#31465) 2022-07-07 08:06:18 -07:00
Adam J. Stewart
211030cd19
py-pytorch-lightning: remove upper bounds on deps (#31443) 2022-07-07 17:05:33 +02:00
Stephen Sachs
3787f0c64c
mpas-model: Overwrite compiler args in Makefile (#31431)
Use 8 byte reals only when `precision=double` is set

The pre-defined compilation targets do not follow the usual behavior of
Makefiles. Compiler flags are set as strings (not Makefile variables) and as
such are not able to be overridden by environment variables. This patch changes
the behavior to the expected behavior of a Makefile such that `fflags` etc have
the desired effect.

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07 17:04:51 +02:00
Ryan Marcellino
be65e4471e
speexdsp: add pkgconfig dependency (#31455) 2022-07-07 16:53:11 +02:00
Adam J. Stewart
8745009492
py-tensorboard: install from wheel (#31445) 2022-07-07 16:48:06 +02:00
Adam J. Stewart
7c5116a73a
py-rasterio: add v1.3.0 (#31457) 2022-07-07 16:46:52 +02:00
Stephen Sachs
e6bdbde54e
libzmq: fix issue with newer GCC and master branch (#31468)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07 08:45:37 -06:00
Adam J. Stewart
386f08c1b4
py-torch: re-add headers/libs properties (#31446) 2022-07-07 16:31:09 +02:00
Adam J. Stewart
9c437e2a10
py-torchgeo: tiff support required (#31447) 2022-07-07 16:30:18 +02:00
Marie Houillon
d393260a11
Fix conditional dependencies for openCARP (#31478) 2022-07-07 08:21:41 -06:00
Stephen Sachs
ad95b0d01d
[py-ipyparallel] setuptools.config.StaticModule moved (#31467)
* [py-ipyparallel] setuptools.config.StaticModule moved

... in py-setuptools@61

* [py-ipyparallel] setuptools fix only added to release 8.2.1

https://github.com/ipython/ipyparallel/pull/680

* [py-ipyparallel] Fix typo

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07 03:17:36 -06:00
Stephen Hudson
3338d536f6
libEnsemble: add v0.9.2 (#31471) 2022-07-06 19:14:12 -07:00
Erik Schnetter
6cbcc94fc9
kokkos: New version 3.6.01 (#31462) 2022-07-06 14:33:48 -06:00
Erik Schnetter
c7ac0b9aa6
spiner: New version 1.5.1 (#31461) 2022-07-06 14:21:53 -06:00
Adam J. Stewart
5efe0822b8
pip bootstrap packages: add myself as maintainer (#31448) 2022-07-06 14:05:42 -06:00
Kenny Weiss
5d97c816ca
Minor typo fix in mfem's package (#31470)
Pointed out by @agcapps
2022-07-06 12:52:23 -07:00
Weiqun Zhang
9a711e6ffa
amrex: add v22.07 (#31464) 2022-07-06 11:13:44 -06:00
iarspider
fcea26ca23
Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1 (#31435)
* Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1

* Update package.py
2022-07-06 10:06:37 -07:00
iarspider
687cac3a79
Add checksum for py-pylint 2.14.4; py-astroid 2.11.5, 2.11.6 (#31436)
* Add checksums for astroid 2.11.5 and 2.11.6

* Add checksum for py-pylint 2.14.4

* Update package.py

* Add checksum for py-tomlkit 0.11.0
2022-07-06 09:58:35 -07:00
otsukay
d9f49d7415
add recipe for improved-rdock (#31158)
* add recipe for improved-rdock

* style: fix format

* style: fix format again

* Fix location of the directory

* Fix copyright

* Fix according to the reviewer's comments.

* Revert "Fix according to the reviewer's comments."

This reverts commit 4877877daf.

* Fix according to the reviewer's comments.

* style: fix format

* Update var/spack/repos/builtin/packages/improved-rdock/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Yuichi Otsuka <otsukay@riken.jp>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-06 09:25:45 -07:00
Erik Schnetter
ccb5432177
readline: New version 8.1.2 (#31025) 2022-07-06 16:32:12 +02:00
Mikael Simberg
dfb0c6c51d
Add pika 0.6.0 (#31458) 2022-07-06 11:55:58 +02:00
Adam J. Stewart
8d1c723576
Bazel: new versions, patches, conflicts, and java version contraints (#31402) 2022-07-05 23:28:50 -05:00
Adam J. Stewart
8037c91403
py-libclang: add v13.0.0 (#31441) 2022-07-05 17:50:07 -07:00
Adam J. Stewart
30e5828f06
llvm-openmp: add v14.0.6 (#31440) 2022-07-05 17:11:00 -07:00
Mark W. Krentel
12fb842bea
hpctoolkit: add variants for gtpin and opencl (#31439)
Reorder a few options to better group them by function.
2022-07-05 12:22:00 -07:00
Matthew LeGendre
37c9974755
Add adiak version 0.2.2 (#31438) 2022-07-05 13:05:51 -06:00
Luke Diorio-Toth
86a127788d
Package/ont-guppy (#31417)
* guppy: new package

* adding different hashs/urls

* working now

* guppy: new package

* ont-guppy: new package

* ont-guppy: new package

* ont-guppy: fixed style
2022-07-05 10:46:58 -07:00
Annop Wongwathanarat
613362c42d
armpl: Add new versions and rename package to armpl-gcc (#31437)
Co-authored-by: Annop Wongwathanarat <annop.wongwathanarat@arm.com>
2022-07-05 10:22:12 -07:00
Richard Berger
b7fb5dbb28
flecsi: exclude caliper versions that cause aborts with Legion (#31410) 2022-07-05 09:29:47 -06:00
Alberto Invernizzi
bb3a663392
ROCmPackage: unify amdgpu_targets (#30582)
* unify amdgpu_targets for rocsolver and rocblas

* add more archs

* adapt all roc packages to unified amdgpu_targets
2022-07-05 14:33:30 +02:00
Valentin Volkl
d05ab36ff9
bdsim: add new package (#31384)
Co-authored-by: gganis <gerardo.ganis@cern.ch>
2022-07-05 12:30:15 +02:00
Jean-Paul Pelteret
f6d701ca26
deal.II: add v9.4.0 (#31279) 2022-07-05 11:40:28 +02:00
Paul R. C. Kent
ffcd9282b5
libcint: add v5.1.3 (#31340) 2022-07-05 11:34:59 +02:00
haralmha
28c5c3285a
root: set gnuinstall to True (#31209) 2022-07-05 11:27:49 +02:00
Adam J. Stewart
6dc708670c
py-torchgeo: latest version of torchvision won't work (#31372) 2022-07-05 11:21:31 +02:00
Marco De La Pierre
d71bbf036f
lammps: add versions and packages Feb-Jun 2022 (#31369) 2022-07-05 11:14:28 +02:00
Mikael Simberg
8cf7241b64
Build llvm-amdgpu's libcxx with cmake --build (#31403)
CMAKE_GENERATOR may be set to something other than "Unix Makefiles" in
which case the build would fail because there is no Makefile for make to
build.
2022-07-05 10:52:52 +02:00
Adam J. Stewart
f932a832ac
node-js: fix build on macOS 12 (#31408) 2022-07-05 10:42:14 +02:00
Cory Bloor
a183b343b9
rocalution: add spack build test (#31415)
- rocprim is a header-only library; its amdgpu_target variant is only
  meaningful for its client executables, not the library itself
- comgr and llvm-amdgpu are merely indirect dependencies (via hip)
2022-07-05 10:02:46 +02:00
Paul R. C. Kent
08fa0c9d46
pyscf: add v2.0.1 (#31342) 2022-07-05 09:14:06 +02:00
Sergey Kosukhin
0b3a409746
nag: fix installation of man pages (#31428) 2022-07-05 09:10:45 +02:00
Marco Feder
18ab94de4b
cgal: add v5.1.5 (#31429) 2022-07-05 09:10:03 +02:00
Moritz Kern
f217ca2059
py-elephant: add versions up to v0.11.1 (#30613)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-07-05 08:59:34 +02:00
Barry Rountree
ac5fd8fa35
util-linux-uuid: Fix icc build issue (#31312) 2022-07-04 16:11:35 +02:00
Glenn Johnson
2eddf8a78d
highfive: Add version 2.4.1 (#31288) 2022-07-03 14:06:41 -05:00
Adam J. Stewart
5b4927a3de
py-pillow: add v9.2.0 (#31409) 2022-07-01 18:53:33 -06:00
Wouter Deconinck
d068b59856
acts: new version 19.3.0 (#31272)
* acts: new version 19.3.0

* acts: new variants +profilecpu, +profilemem
2022-07-01 13:06:55 -07:00
Adam J. Stewart
f2789fa5c5
py-cartopy: add v0.20.3 (#31354)
* py-cartopy: add v0.20.3

* Add py-setuptools-scm 7.0.3
2022-07-01 13:05:14 -07:00
Paul R. C. Kent
f5b0e264fc
Add xcfun 2.1.0 (#31336)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-01 13:00:53 -07:00
Paul R. C. Kent
1f696951e7
Add 5.2.3 (#31337) 2022-07-01 12:59:50 -07:00
Erik Schnetter
2508aa1ab4
ninja: New version 1.11.0 (#31400) 2022-07-01 13:57:46 -06:00
Jonathan R. Madsen
eed265f593
Initial implementation of Omnitrace package (#31381)
* Initial implementation of Omnitrace package

* Fix flake8 errors

* Fix run environment when +python

* String normalization and fix for build env when +tau

* Tweak to style
2022-07-01 12:53:33 -07:00
Simon Pintarelli
bc215c7504
qmcpack pass cuda_arch correctly to cmake (#31407)
Fix compilation of @3.14.0+cuda  (didn't check older versions).
2022-07-01 12:39:50 -07:00
WuK
8b4de69f6a
py-altair: new package (#31386)
* py-altair: new package

* Update var/spack/repos/builtin/packages/py-altair/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-altair/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-altair/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-altair: update

* Update var/spack/repos/builtin/packages/py-altair/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-07-01 10:46:35 -07:00
Harmen Stoppels
3e85d3fd03
bat, hyperfine, ripgrep: Bump versions (#31364) 2022-07-01 08:49:57 +02:00
Brian Van Essen
06f4f43915
New package: NVIDIA cuTensor (#31397) 2022-06-30 22:37:47 -07:00
Richard Berger
4a6b447465
New package: bueno (#31374) 2022-06-30 22:32:30 -07:00
Max Zeyen
43654078fc
boost: do not add the context-impl option for version below 1.65.0 (#30719)
* boost: do not access the context-impl variant for versions below 1.65.0

* boost: check if spec.variants contains context-impl

* boost: improve error message when the context-impl variant causes a conflict

Executing spack solve boost@1.63.0 +context context-impl=fcontext
triggers the following error message:
==> Error: No version for 'boost' satisfies '@1.63.0' and '@1.79.0'

With this change, the error message becomes the following:
==> Error: Cannot set variant 'context-impl' for package 'boost' because the variant condition cannot be satisfied for the given spec
2022-06-30 19:27:38 -07:00
Erik Schnetter
8cd542529a
libcxxwrap-julia: New version 0.9.1 (#31392) 2022-06-30 17:01:42 -07:00
Luke Diorio-Toth
60c533b80b
py-cmseq: new package (#31375)
* py-cmseq: new package

* py-cmseq: fixed copyright year

* py-cmseq: changed download to pi, added deps
2022-06-30 10:58:12 -07:00
Mikael Simberg
60d94f2782
Add tracy 0.8.2 (#31385) 2022-06-30 10:55:00 -07:00
Stephen Sachs
8e591f058e
[mpas-model] Add optional make_target and precision variants (#31388)
`make_target` can be used to instruct Spack to build one of the pre-defined make
targets in the MPAS makefile. Spack will guess the targret based on the value of
`spack_fc`, but the user can overwrite the target as variant. E.g.
```
spack install mpas-model make_target=pgi-nersc
```

`precision` is used to set the `PRECISION` flag in the Makefile to {single,
double}. Default is double.

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-06-30 10:52:33 -07:00
Stephen Sachs
4397ec6a48
[mpas-model] Add new versions (#31390)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-06-30 10:50:32 -07:00
Jack Morrison
cbce77b3d9
SOS: Update to include version 1.5.1 (#31394) 2022-06-30 10:26:34 -07:00
Marco De La Pierre
03843db00f
plumed: added fine grained control over optional modules (#29743) 2022-06-30 16:23:27 +02:00
Stephen Sachs
e046dc3ca4
lammps: compiler flags for Intel compiler on AMD zen+ procs (#31183)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-06-30 07:25:41 -06:00
Stephen Sachs
eec78f7702
lammps: fix sha256 of patch_20201029 (#31177)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-06-30 15:21:12 +02:00
Adam J. Stewart
abd6241978
py-torchmetrics: add v0.9.2 (#31382) 2022-06-30 09:05:20 +02:00
Adam J. Stewart
eb6564bc33
py-laspy: add v2.2.0 (#31383) 2022-06-30 09:05:04 +02:00
WuK
ec89ab1c27
cutlass: new package (#31379)
* cutlass: new package

* cutlass: fix ci

* cutlass: remove `join_path`

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* cutlass: adding a message for cuda_arch

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* cutlass: simplify cmake_args

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* cutlass: fix cmake_args

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-06-29 16:39:39 -07:00
Glenn Horton-Smith
e6678e5f12
New packages: EPICS (Experimental Physics and Industrial Control System) (#28270) 2022-06-29 13:36:48 -07:00
Glenn Johnson
b200c57739
Set R_LIBS_USER='' in dependent build environment (#31287)
* Set R_LIBS_USER='' in dependent build environment

Despite R packages being installed with the --vanilla flag, which
ignores Rprofile and Renviron files, R will still set R_LIBS_USER if the
default directory exists. This could lead to pulling in packages from
that directory during the build which could cause the build to fail. To
avoid that, explicitly set R_LIB_USER='' to ensure that packages from
the HOME/R directory are not in the library path.

* Update var/spack/repos/builtin/packages/r/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-06-29 14:14:21 -06:00
Harmen Stoppels
814418db35
file: 5.41 5.42 (#31367) 2022-06-29 20:59:49 +02:00
Davide
53001cc28c
Allow building octave w/ Intel compiler (#31346) 2022-06-29 11:55:39 -07:00
Adam J. Stewart
93c16f1ee3
PythonPackage: add default libs/headers attributes (#28527)
* PythonPackage: add default libs/headers attributes

* Style fix

* libs and headers should be properties

* Check both platlib and include

* Fix variable reference
2022-06-29 11:55:24 -07:00
Satish Balay
7bacde16e4
petsc, py-petsc4py: add 3.17.3 (#31356) 2022-06-29 11:51:45 -07:00
Harmen Stoppels
44d9931cdd
git: 2.37.0 (#31370) 2022-06-29 20:06:01 +02:00
Nadir Román Guerrero
54b7df0bfa
Adds py-websockets 10.3 (#31363) 2022-06-29 17:58:46 +00:00
Harmen Stoppels
ee680567a5
ccache: 4.6.x (#31371) 2022-06-29 10:43:42 -07:00
Sam Gillingham
6a1bbc1658
kealib: add version 1.4.15 (#31355) 2022-06-29 08:24:23 -07:00
Harmen Stoppels
6f3e61b179
vim: add v9.0.0000 (#31365) 2022-06-29 16:36:14 +02:00
Luke Diorio-Toth
a9c246ed67
amrfinder: new package (#31273) 2022-06-29 15:40:03 +02:00
Harmen Stoppels
768d3504dd
tree: 2.0.2 (#31362) 2022-06-29 13:06:38 +02:00