* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize
* adding gptune package
* minor fix for macos spack test
* update patch for py-scikit-optimize; update test files for gptune
* fixing gptune package style error
* fixing unit tests
* a few changes reviewed in the PR
* improved gptune package.py with a few newly added/improved dependencies
* fixed a few style errors
* minor fix on package name py-pyro4
* fixing more style errors
* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* resolved a few issues in the PR
* fixing file permissions
* a few minor changes
* style correction
* minor correction to jq package file
* Update var/spack/repos/builtin/packages/py-pyro4/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fixing a few issues in the PR
* adding py-selectors34 required by py-pyro4
* improved the superlu-dist package
* improved the superlu-dist package
* moree changes to gptune and py-selectors34 based on the PR
* Update var/spack/repos/builtin/packages/py-selectors34/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi
* fixing style issue of gptune
* changing file mode
* improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant
* fixing style error
* corrected pddrive_spawn path in gptune test; enforcing gcc>7
* fixing style error
* setting environment variables when loading gptune
* removing debug print in hypre/package.py
* adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR
* changing site_packages_dir to python_platlib
* not using python3.9 for py-gpy, which causes due to dropped support of tp_print
* more replacement of site_packages_dir
* fixing a few dependencies in gptune; added a gptune version
* adding url for gptune
* minor correction of gptune
* updating versions in butterflypack
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [py-xonsh] added py-xonsh package
* [py-xonsh] change dependency to python 3.6
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add sticky variants
* Add unit tests for sticky variants
* Add documentation for sticky variants
* Revert "Revert 19736 because conflicts are avoided by clingo by default (#26721)"
This reverts commit 33ef7d57c1.
* Add stickiness to "allow-unsupported-compiler"
- To retrieve the correct spack version we need to get it from the git
repo.
- Recommend installing the package with root for production
- Add Tomas as maintainer to sarus' spack package
- Add the option to disable unit tests in latest versions
Fixes the following build failure when building with gcc 11:
478 ../../../../CPP/7zip/Archive/Wim/WimHandler.cpp: In member function 'virtual LONG NArchive::NWim::CHandler::GetArchiveProperty(PROPID, PROPVARIANT*)':
>> 479 ../../../../CPP/7zip/Archive/Wim/WimHandler.cpp:308:11: error: use of an operand of type 'bool' in 'operator++' is forbidden in C++17
480 308 | numMethods++;
481 | ^~~~~~~~~~
>> 482 ../../../../CPP/7zip/Archive/Wim/WimHandler.cpp:318:9: error: use of an operand of type 'bool' in 'operator++' is forbidden in C++17
483 318 | numMethods++;
484 | ^~~~~~~~~~
* opencv: add new version, variant, and patch
- added version 4.5.4
- added tesseract variant
- added patch to not add system paths
* Add leptonica depends and contrib conflicts
* Add dependencies for 1394 support
- new package: libraw1394
- add sdl dependency to libdc1394
- add conflict for openjpeg and jasper
* Adjust dependencies and conflicts for opencv modules
* rewrite of opencv
- all prebuilt apps are now variants and can be installed
- core is no longer a variant. It was always built anyway so it was not
really a variant.
- contrib is no longer a variant. All of the contrib modules are now
available as variants.
- components that can not be built with Spack are no longer variants.
They are set to 'off' to prevent pulling from system.
- handle the case where a module and a component have the same name
- use `with when` framework
- adjust dependencies and conflicts
- new package: libraw1394
- have libdc1394 depend on libraw1394
- patch to find clp
- patch to find onnx
- patch for cvv to find Qt
- format with black
* Incorporate recommended changes
- fix variants and dependencies on packages that depend on opencv
- remove opencv-3.2 and patches
- add some new patches to handle different versions
- cntk needs further work
- the openvslam package was markde deprecated as it is no longer an
active project and the repository has no code
* Remove gmake dependency.
* Remove sdl support
SDL is only used in an example case, but the examples are not built.
* remove openvslam
* Remove opencv+flann variant from 3dtk
* Back out cfitsio constraint from py-astropy
* remove opencv+flann variant from dlib
* remove boost constraint from 3dtk
* Remove non-opencv related bohrium changes
* Adjustments for cntk
- protobuf constraint at version 3.10
- need specific variants for opencv
- improve patch
* Deprecate CNTK package
* variant tweaks
- added appropriate conflicts for cublas
- made cuda/cudev relationship explicit
- moved openx to pending components as it needs an openvx package
* fix isort style error
* Use date version from kaldi rather than commit
* Revert changes from a bad rebase
* Add +flann to 3dtk and dlib
* Use compression support with libtiff
* remove `+datasets` from opencv dependency
The py-torchgeo package does not need opencv+datasets.
* fix typo
zip --> zlib
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize
* adding gptune package
* minor fix for macos spack test
* update patch for py-scikit-optimize; update test files for gptune
* fixing gptune package style error
* fixing unit tests
* a few changes reviewed in the PR
* improved gptune package.py with a few newly added/improved dependencies
* fixed a few style errors
* minor fix on package name py-pyro4
* fixing more style errors
* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* resolved a few issues in the PR
* fixing file permissions
* a few minor changes
* style correction
* minor correction to jq package file
* Update var/spack/repos/builtin/packages/py-pyro4/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fixing a few issues in the PR
* adding py-selectors34 required by py-pyro4
* improved the superlu-dist package
* improved the superlu-dist package
* moree changes to gptune and py-selectors34 based on the PR
* Update var/spack/repos/builtin/packages/py-selectors34/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi
* fixing style issue of gptune
* changing file mode
* improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant
* fixing style error
* corrected pddrive_spawn path in gptune test; enforcing gcc>7
* fixing style error
* setting environment variables when loading gptune
* removing debug print in hypre/package.py
* adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR
* changing site_packages_dir to python_platlib
* not using python3.9 for py-gpy, which causes due to dropped support of tp_print
* more replacement of site_packages_dir
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* espnet first build with depends
* fixed flake8
* updated to lastest version and removed python dependency
* changed to pypi and version 2.17.2
* [py-kaldiio] depends on py-pytest-runner
* [py-kaldiio] updated copyright
Co-authored-by: Sid Pendelberry <sid@rit.edu>
* prmon: make sure integration tests do not run in parallel
Some integration tests fail if not run on an otherwise idle machine.
* prmon: run unittests based on googletest
* prmon: fix checksums
* superlu-dist: use CMakePackage helper functions
* Fix#28609
It's OK to have CUDA in the dependency tree as long as it's not being
used for superlu-cuda.
* Update prmon package to latest versions
Add recent versions of the prmon package
Add the spdlog dependency for versions >=3
Add package developers as additional maintainers
Update name of development branch to 'main'
* Correct checksum for v3.0.1
at-spi2-core is automatically selecting dbus-broker and enabling systemd if it finds dbus-broker-launch which some systems might have even without systemd being part of the actual spack environment. This is not ideal for a spack package.
ucx has the configure option --[enable|disable]-backtrace detail.
This option is not explicitely set by spack, causing problems on my system, because
./configure does not find the bfd.h header file / libbfd.so library.
Added variant + dependencies (binutils). Disabled by default
* trilinos: version 12 requires cxxstd=11
* trilinos: use cmake version 3.21 or old when trilinos version 12
* conflict cxxstd=17 and cmake@3.2.[01]
* trilinos: version 12 requires cxxstd=11.
* Trilinos_CXX11_FLAGS is set to ' ' to avoid inject C++11 flag.
* set Trilinos_CXX11_FLAGS only version 12 or older.
* trilinos: update dependencies
Use the tribits deps to clarify some dependencies, and group some together
using `with` statements, eliminating some transitive conflict duplication.
* trilinos: Restricit cuda incompatibility
* e4s: vastly reduce number of packages in trilinos-cuda build
Not clear who the customers of cuda-enabled trilinos are, or what options
they need, or which sets of options conflict...
* e4s: remove ~wrapper from trilinos+cuda
* VTK-m: Make vtk-m consistent with ROCmPackage
* VTKm: Add kokkos variant
Specifying +kokkos will enable kokkos backend.
Specifying +kokkos with +rocm will require a kokkos with a ROCm backend.
Specifying +cuda enables VTK-m native CUDA backend. VTK-m native cuda backend
is not compatible with the kokkos +cuda backend.
* VTK-m: Add cuda_native variant
Required to allow specifying a vtk-m spec the selects a
cuda_arch and predictably propagate that to the underlying kokkos
dependency.
This also makes explicit selecting kokkos with a cuda backend or using
the VTK-m cuda backend.
* Mesa(18): Use libllvm virtual package
* Mesa patch configuration
Patch Mesa to define LLVM_VERSION_SUFFIX if llvm is pre-release
* Patch llvm-config to define LLVM_VERSION_SUFFIX
* Add a new version to track development
The released versions do not properly install via cmake which leads to
errors when linking against the library. These upstream problems have
been addressed on the glm development branch.
* Move git to class level and remove redundant depends
* vecgeom: require exact version of veccore
Fixes configure error from downstream package:
```
CMake Error at /rnsdhpc/code/spack/opt/spack/apple-clang/cmake/7zgbrwt/share/cmake-3.22/Modules/CMakeFindDependencyMacro.cmake:47 (find_package):
Could not find a configuration file for package "VecCore" that is
compatible with requested version "0.8.0".
The following configuration files were considered but not accepted:
/rnsdhpc/code/spack/var/spack/environments/celeritas/.spack-env/view/lib/cmake/VecCore/VecCoreConfig.cmake, version: 0.6.0
```
* veccore: add new versions
* Add flags to cabana to enable hypre and heffte when they are part of spec. Also add googletest to build dependencies
* Fixed mixed spaced and tabs
* Update package.py
* Update package.py
* Update package.py
* Modified to request specifically heFFTe version 2.0.0 due to
limitations in heFFTe cmakefiles.
* Update var/spack/repos/builtin/packages/cabana/package.py
Co-authored-by: Christoph Junghans <christoph.junghans@gmail.com>
* Integrated more heffte and hypre versions into cabana requests
Co-authored-by: Christoph Junghans <christoph.junghans@gmail.com>
* ParaView/VTK: Constrain version for ADIOS2 patch.
Older available versions of ParaView/VTK predate
ADIODS2 support.
ParaView lower bound is 5.8 and VTK lower bound is 8.2.0
* ParaView: Gate the ADIOS2 by verison
It seems that spack reads the output of `setup_run_environment` to build the actual spack modules and lmod modules. So, any output here will used verbatim on the shell.
This patch fixes https://github.com/spack/spack/issues/26733
1. adding latest release 3.5.0
2. updating cmake requirement to match that of Kokkos
3. adding logic to depend on the right version of Kokkos by default
* Kokkos: updating package list, maintainers and minimum cmake version
* Kokkos: updating maintainers list
Updating maintainers list to have the correct GitHub handle for Jan.
* [kaldi] Added version 2021-11-16
* [kaldi] Added logic for new version and when cuda 11 is used
* [kaldi] Added patch file when cuda 11 as cub is now built into it
* [kaldi] removed .999 and simplified some logic
Co-authored-by: Doug Heckman <dahdco@rit.edu>
* add py-ats package
* add new 7.0.10 tag
* add myself as a maintainer
* add dependencies for python and setuptools
* style
* added todo for flux
* words
* update versions users should use
* Use pip to bootstrap pip
* Bootstrap wheel from source
* Update PythonPackage to install using pip
* Update several packages
* Add wheel as base class dep
* Build phase no longer exists
* Add py-poetry package, fix py-flit-core bootstrapping
* Fix isort build
* Clean up many more packages
* Remove unused import
* Fix unit tests
* Don't directly run setup.py
* Typo fix
* Remove unused imports
* Fix issues caught by CI
* Remove custom setup.py file handling
* Use PythonPackage for installing wheels
* Remove custom phases in PythonPackages
* Remove <phase>_args methods
* Remove unused import
* Fix various packages
* Try to test Python packages directly in CI
* Actually run the pipeline
* Fix more packages
* Fix mappings, fix packages
* Fix dep version
* Work around bug in concretizer
* Various concretization fixes
* Fix gitlab yaml, packages
* Fix typo in gitlab yaml
* Skip more packages that fail to concretize
* Fix? jupyter ecosystem concretization issues
* Solve Jupyter concretization issues
* Prevent duplicate entries in PYTHONPATH
* Skip fenics-dolfinx
* Build fewer Python packages
* Fix missing npm dep
* Specify image
* More package fixes
* Add backends for every from-source package
* Fix version arg
* Remove GitLab CI stuff, add py-installer package
* Remove test deps, re-add install_options
* Function declaration syntax fix
* More build fixes
* Update spack create template
* Update PythonPackage documentation
* Fix documentation build
* Fix unit tests
* Remove pip flag added only in newer pip
* flux: add explicit dependency on jsonschema
* Update packages that have been added since this was branched off of develop
* Move Python 2 deprecation to a separate PR
* py-neurolab: add build dep on py-setuptools
* Use wheels for pip/wheel
* Allow use of pre-installed pip for external Python
* pip -> python -m pip
* Use python -m pip for all packages
* Fix py-wrapt
* Add both platlib and purelib to PYTHONPATH
* py-pyyaml: setuptools is needed for all versions
* py-pyyaml: link flags aren't needed
* Appease spack audit packages
* Some build backend is required for all versions, distutils -> setuptools
* Correctly handle different setup.py filename
* Use wheels for py-tomli to avoid circular dep on py-flit-core
* Fix busco installation procedure
* Clarify things in spack create template
* Test other Python build backends
* Undo changes to busco
* Various fixes
* Don't test other backends
* Add new package to spack. survey is a lightweight application performance tool that also gathers system information and stores it as metadata.
* Add maintainer and note about source access.
* Update the man path per spack reviewer suggestion.
* Remove redundant settings for PYTHONPATH, PATH, and MANPATH.
* Move to a one mpi collector approach for cce/tce integration.
* Add pyyaml dependency
* Make further spack reviewer changes to python type specs, mpi args, build type variant.
* Add reviewer requested changes.
* Add reviewer docstring requested changes.
* Add more updates from spack reviewer comments.
* Update the versions to use tags, not branches
* Redo dashes to fix issue with spack testing.
Co-authored-by: Jim Galarowicz <jgalarowicz@newmexicoconsortium.org>
Backport a patch for v1.3.4 that fixes an unsigned typedef problem
on macOS: https://github.com/xiph/ogg/pull/64
Also add v1.3.5 that has this issue fixed.
spack paths can be long and this overflows (at least) these buffers
inside of the bundled T1lib inside of the grace distribution, leading
to crashes on startup.
Charm++ versions below 7.0.0 have build issues on macOS, mainly due to the
pre-7.0.0 `VERSION` file conflicting with other version files on the
system: https://github.com/UIUC-PPL/charm/issues/2844. Specifically, it
conflicts with LLVM's `<version>` header that was added in llvm@7.0.0 to
comply with the C++20 standard:
https://en.cppreference.com/w/cpp/header/version. The conflict only occurs
on case-insensitive file systems, as typically used on macOS machines.
