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Author SHA1 Message Date
Xavier Delaruelle
398c53eaa2 environment-modules package: add version 4.3.0 (#12155) 2019-07-27 12:20:39 -05:00
Chuck Atkins
18e41f9959 adios2: Patch findmpi for downstream issues. (#12152) 2019-07-26 13:17:31 -07:00
Sinan
511f84dd8c kealib: fix incorrect md5sum for v1.4.11 (#12126) 
* fix incorrect md5sum for v1.4.11

* fix url and replace md5 with sha256

* add mainter
 2019-07-26 15:14:46 -05:00
Ryan S. Elliott
12055acccc update to kim-api-2.1.1 and openkim-models-2019-07-25 (#12137) 
* update to kim-api-2.1.1 and openkim-models-2019-07-25

* openkim-models provide needed dependency constraints and settings

* add maintainers and fixup flake8 errors
 2019-07-26 13:06:10 -05:00
Adam J. Stewart
fbb04ece43 Add flake8 3.7.8 (#12141) 2019-07-26 12:11:07 -05:00
t-karatsu
21daa41dd6 libxc: Make configure recognize Fujitsu compiler (#12147) 2019-07-26 12:09:52 -05:00
Justin S
e2d16429ae py-pyomo: new package at 5.6.6 (#12134) 
* py-pyomo: new package at 5.6.6

* py-pyomo: add missing deps, python constraint
 2019-07-26 10:38:25 -05:00
Rémi Lacroix
9caba3e072 Small fixes for font-util package (#12148) 
* font-util: Remove duplicated dependencies.

* font-util: Fix path handling for font resources.

The "join_path" call made no sense but still managed to work somehow most of the times.
 2019-07-26 10:32:39 -05:00
Adam J. Stewart
0babdab8f0 Add GDAL 3.0.1 (#12140) 2019-07-26 09:25:35 +02:00
Adam J. Stewart
07fefea52d Add Python 3.7.4 (#12142) 2019-07-26 09:18:46 +02:00
Oliver Breitwieser
867ba9d7fe googletest: Fix reversed +pthreads option (#12128) 
If +pthreads is specified, googletest actually gets build without
pthreads support and vice versa.

If pthreads is not available, googletest should detect it itself which
is why "enabling" pthreads in case of ~pthreads does not seem to cause
any error.

Change-Id: I29de8c4a23dc3901124b27a1ead3354949b7e65b
 2019-07-25 19:50:23 -05:00
Justin S
94af6cad5f interproscan: new package at 5.36-75.0 (#12130) 2019-07-25 19:49:42 -05:00
Matthias Diener
7cc1292202 git-lfs: add version 2.8.0 (#12131) 2019-07-25 19:46:03 -05:00
Glenn Johnson
7ad8061cbb Patches for graphviz (#12133) 
- patch to build with qt5, enabling gvedit to build
- two patches to compile graphviz with icc
 2019-07-25 19:45:10 -05:00
Satish Balay
7bd3b66f6e xsdk: phist has a conflict with gcc version <= gcc-4.9.1 (#11946) 
* xsdk: phist has a conflict with gcc version <= gcc-4.9.1 - so add a variant to disable it on older compiler builds

This is triggered by #11677

* fix typo
 2019-07-25 14:01:00 -05:00
Gregory Lee
e8a71089a6 use Excecutable instead of exec for editing licenses (#11968) 
* fix defunct editor exit in #11691
 2019-07-25 11:48:32 -07:00
Elizabeth Fischer
fff99a8a3a Make OpenJDK the default (#12106) 2019-07-25 10:25:26 -07:00
Chuck Atkins
e614d4b481 cmake: Add a patch to revert a findmpi regression (#12129) 2019-07-25 10:23:01 -07:00
Chris Green
c20c153d16 catch: more versions, new and older. (#12123) 
New versions 2.9.0, 2.9.1, older versions 2.2.2, 2.2.3, 2.4.1, 2.4.2, 2.7.0, 2.7.1, 2.7.2.
 2019-07-25 11:33:03 -05:00
simo-tuomisto
4c7ee8b7c8 lame & libmad: Added two new packages for sox mp3 support. (#11964) 
* Added a new package for LAME and a variant in sox for it.

* Fixed download url for LAME

* libmad: Added new package libmad for mp3 decoding. Changed sox variant from lame to mp3.

* libmad: Added m4 as a requirement

* libmad: Added comment on patch origins

* libmad: Added a list_url for alternate download location

* libmad: Fixing libmad download url
 2019-07-25 10:40:50 -05:00
Sinan
9ace419aa5 gdal: added versions 2.4.2 and 3.0.1 (#12125) 2019-07-25 17:14:37 +02:00
Chris Green
4190f302e5 geant4: improvements with respect to building against CLHEP. (#12124) 2019-07-25 08:58:13 -05:00
Todd Gamblin
b0abbfecb8 new command: spack maintainers queries package maintainers 
- We don't currently make enough use of the maintainers field on
  packages, though we could use it to assign reviews.

- add a command that allows maintainers to be queried
  - can ask who is maintaining a package or packages
  - can ask what packages users are maintaining
  - can list all maintained or unmaintained packages

- add tests for the command
 2019-07-24 14:10:08 -07:00
Tamara Dahlgren
7411347a29 tests: Test install of unconcretized spec (#12099) 2019-07-24 13:30:27 -05:00
Glenn Johnson
8bb745325d Add py-setuptools as a build dependency for py-absl-py (#12109) 
I needed to add py-setuptools to get py-absl-py to build.
 2019-07-24 12:33:45 -05:00
Glenn Johnson
642d3345f6 Add conflicts statement to freetype for icc (#12111) 
Freetype-2.8 and above use __builtin_shuffle which is not supported by
icc.
 2019-07-24 12:33:24 -05:00
t-karatsu
0f98cf0398 Perl take in flags (#12112) 
* perl: perl package takes in spack cflags.

* fix for flake8 test.
 2019-07-24 12:32:49 -05:00
Toyohisa Kameyama
bbc689ae38 nnvm: cmake bug is fixed. (#12113) 2019-07-24 12:31:49 -05:00
Toyohisa Kameyama
cb62b1ff85 rapidjson: Don't add -march=native on ARM and gcc 5.x or before. (#12117) 2019-07-24 12:30:32 -05:00
Nichols A. Romero
63813fa9c0 QMCPACK Update July 2019 (#12097) 
* Add QMCPACK v. 3.8.0

* Remove QE variant conflict for serial QMCPACK installations.

* Add support for QE 6.4.1 converter.

* FindLibxml2QMC patch function only needed prior to QMCPACK 3.8.0
 2019-07-24 12:28:35 -05:00
Glenn Johnson
42c3782f7e Do not build c-blosc test if intel in spec (#12110) 
While the c-blosc library compiles with icc some of the c-blosc tests do
not. Disable the tests so that the spack build can continue.
 2019-07-24 11:17:11 -05:00
t-karatsu
0d690edfb2 cmake: fix cxx98flag's name (#12114) 2019-07-24 11:28:22 -04:00
Massimiliano Culpo
6fac0ae687 Fixed a name clash in the 'from_environment_diff' function (#12116) 
* Added a unit test reproducing the failure in 12085

* Fixed name clash in the 'from_environment_diff' function

The bug reported in #12085 stemmed from a name clash among variables,
introduced during the refactor in #10753 and not caught by unit tests
and reviews.
 2019-07-24 10:25:24 -05:00
Toyohisa Kameyama
a8b12f0cb6 rocksdb: Don't add -march=native on ARM and gcc 5.x or before. (#12108) 2019-07-23 22:33:05 -05:00
Douglas Duckworth
ec29461632 added relion 3.0.7 - removed deprecated versions (#12101) 
* relion - added v 3.0.7 and removed deprecated versions that have inferior performance

* relion 3.0.7 does require cuda 9 or above
 2019-07-23 18:13:00 -05:00
Adam J. Stewart
58427a7102 Typo fixes in Spack Environments docs (#12100) 2019-07-23 17:42:16 -05:00
Toyohisa Kameyama
6b07407cd0 isaac-server: Don't add -march=native on ARM and gcc 5.x or before. (#12042) 2019-07-23 16:48:25 -05:00
Toyohisa Kameyama
39139b9db8 nanoflann: Don't add -mtune=native on ARM and gcc 5.x (#12093) 2019-07-23 16:47:28 -05:00
Nichols A. Romero
2b35ad7b22 Quantum Espresso Update 2019 (#12098) 
* Add support for QE 6.4.1

* QE 6.3. backports branch no longer relevant.

* List QE develop first.
 2019-07-23 16:44:08 -05:00
Jimmie Lin
8095e26ffa Add EFA fabric to libfabric 2019-07-23 12:08:33 -07:00
Greg Becker
daac376862 error messages: include whole spec for "no externals found" message (#12070) 
* Provide better error message when matching externals are found for package marked not buildable
 2019-07-23 13:58:07 -05:00
Pariksheet Nanda
5878b418c5 ioapi: add version 3.2 (#12088) 
* ioapi: add version 3.2

* ioapi: unwrap version checksum; it's exempt from line length QA

* ioapi: drop overridden build(); it's the same as the default
 2019-07-23 12:10:01 -05:00
Gregory Becker
a086dda82f hashing: fix caching of dependency hashes in to_node_dict 2019-07-23 08:58:49 -07:00
Greg Becker
4ff2773704 ncurses: remove TERMINFO from build env (#12086) 2019-07-23 10:13:41 -05:00
Marco Comparato
7ea4e50587 font-util: add missing autoconf automake dependencies (#12053) 2019-07-23 09:41:04 -05:00
Todd Gamblin
3cb40e1c02 commands: add tests for all subcommands of spack pkg 2019-07-22 23:01:45 -07:00
Todd Gamblin
0b17bccdce commands: add spack pkg changed subcommand, better test support 
- Add `spack pkg changed` to show changed and added packages for a
  commit.

- Make `spack pkg` support tests better.
 2019-07-22 23:01:45 -07:00
Daniel Topa
07f3921838 Add UCX 1.6.0 (#12089) 
https://github.com/openucx/ucx/releases/tag/v1.6.0
Released 2019-07-17

Verification builds on LANL Darwin x86_64 and Power9:

dantopa@cn2037:pr-update-ucx.spack $ date
Mon Jul 22 17:04:14 MDT 2019

dantopa@cn2037:pr-update-ucx.spack $ pwd
/scratch/users/dantopa/repos/spack/pr-update-ucx.spack

dantopa@cn2037:pr-update-ucx.spack $ spack find -ldf ucx

==> 2 installed packages
-- linux-centos7-x86_64 / gcc@4.8.5 -----------------------------
w7fp4n6    ucx@1.6.0%gcc
tt2hkol        ^numactl@2.0.12%gcc
srhy7ry        ^rdma-core@20%gcc
kvgvhpv            ^libnl@3.3.0%gcc

-- linux-rhel7-ppc64le / gcc@4.8.5 ------------------------------
cji3ce7    ucx@1.6.0%gcc
pmgndwh        ^numactl@2.0.12%gcc
qymrwx6        ^rdma-core@20%gcc
2263pm5            ^libnl@3.3.0%gcc

Signed-off-by: Daniel Topa <dantopa@lanl.gov>
 2019-07-22 21:43:35 -05:00
Matthias Diener
19968a0035 scons: add version 3.1.0 (#12084) 2019-07-22 17:35:40 -05:00
Chuck Atkins
69c302f455 cmake: Move cxx11 flags for fujitsu into the flag_handler method (#12056) 
* cmake: Move cxx11 flags for fujitsu into the flag_handler method

* cmake: sanitization and error checking in flag_handler

* cmake: Fix fujitsu flag check from 'fc' to 'fj'
 2019-07-22 17:33:40 -05:00