Commit Graph

19219 Commits

Author SHA1 Message Date
Christoph Junghans
fcbf0545c7 votca-*: add stable version (#16336)
* votca-*: add stable version

* votca-*: add myself as maintainer
2020-04-27 20:43:34 -05:00
Tiziano Müller
3115b5c758 CP2K: arch file improvements and blas-dependency simplification (#16074)
* cp2k: prettify arch-file, call pkg-config directly

this allows to re-use the arch-file without having to load the complete
Spack environment, for example after a dev-build

* cp2k: use consistency check instead of blas lib enum

this makes using other BLAS/LAPACK implementations possible without
explicitly adding support for them

* cp2k: add basic support for Cray and XL Compilers, correct Intel fp mode

* cp2k: add myself as maintainer

* cp2k: use "master" to denote the git version

* cp2k: use spack_cc/fc/cxx when possible, set CXX explicitly

* cp2k: set __MKL when using the MKL, not just the Intel compiler

* cp2k: drop self. when referencing spec where possible

* cp2k: add forgotten elpa+openmp dep

* cp2k: set C++14 for recent versions
2020-04-27 19:42:33 -05:00
Dr. Christian Tacke
f5a5a11c77 abseil-cpp: new Version, Build Shared Library (#16125)
* Add new version: "Abseil LTS branch, Feb 2020, Patch 1"
* Build shared libraries by default with new version
* Older versions do not support building shared libraries
2020-04-27 19:41:15 -05:00
Diego Magdaleno
f1a7fb2ffc Update bat and make the url dynamic (#16127)
* Update bat and make the url dynamic

- Now depending on the version it will calculate
the url

- This also fixes a weird issue that was reported
on Darwin, back when I reported that Rust wasn't
linking properly on Darwin #15887 on the comment
by hartzell i was also experiencing this issue

* Remove unnecessary stuff

- Removes the need for LLVM

- Removes the need for version calculation.

* Keep the versions on 1 line

* Pass flake8 tests
2020-04-27 19:40:35 -05:00
Diego Magdaleno
cd56882998 Add a new package Exa (#16126)
* Add new package exa

* Format and fix a silly typo

* Fix SHA256 SUM and make URL calculation dynamic

* Remove unnecessary URL calculation

* Update package.py

* Keep the version on 1 line

* Pass flake8 checks
2020-04-27 19:39:09 -05:00
asmaahassan90
b04b6e1449 Add ShengBTE (#16154)
* Add ShengBTE

Adding a new package; ShengBTE. I tried adding it a MakefilePackage, and use build_directory = 'Src', but it was as if the build_directory gets ignored and make complains about target not found. and using the make funtion here instead of os.system, I get errors that config.f90 is not found which is already available under Src as well.

* more enhancmenets

fix lint; use mkl spec; use build_directory variable

* one more fix

* Use Makefile template

* Update var/spack/repos/builtin/packages/shengbte/package.py

use mkl instead of intel-mkl as a dependency

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/shengbte/package.py

update recipe as suggested by reviewer

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* enhance recipe

remove white space; changes as suggested by reviewer

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-27 19:38:15 -05:00
Joseph Ciurej
f314ff6639 python : fix SSL for older Python versions (#16217)
* Fixed SSL pathing for older versions of Python (i.e. @:3.6.999).

* Fixed an issue where the 'python~ssl' variant wasn't properly being respected.

* Improved the '~ssl' patch by making it functional instead of diff-based (enables 3.X.Y patches).

* Fixed comment formatting to satisfy 'flake8' style requirements.
2020-04-27 19:36:33 -05:00
Tim Haines
204179eed3 elfutils: Add version 0.179 (#16334) 2020-04-27 19:26:28 -05:00
Christoph Junghans
8060bc6523 graphviz: add poppler support (#16331)
* graphviz: add poppler support

* graphviz: actually needs poppler+glib

* poopler: fix glib build, new version
2020-04-27 15:18:03 -06:00
Mark W. Krentel
08e53b67f8 hpcviewer: add version 2020.04 (#16332)
* hpcviewer: add version 2020.04

* ibm-java: add version 8.0.6.7
2020-04-27 16:04:02 -05:00
Brian Van Essen
a4b17b9503 cuDNN: Help dependents find libs/includes on Power arch (#16128)
On Power architectures cuDNN will install in a target directory. This
sets cuDNN_ROOT to point to the subdirectory to help dependents use
this install.
2020-04-27 13:15:46 -07:00
Amjad Kotobi
1c45153e00 ecflow added version 4.12.0 (#16327) 2020-04-27 13:19:41 -05:00
Amjad Kotobi
31eff3578f cmake added version 3.17.1 (#16326) 2020-04-27 13:19:10 -05:00
Benjamin Tovar
505a511af4 update cctools to version 7.1.3 (#16324) 2020-04-27 13:18:44 -05:00
iarspider
a277b96b39 Make mariadb provide mysql-client... (#16322)
... as well as mariadb. Needed for ROOT.
2020-04-27 11:01:48 -05:00
vvolkl
77812845b8 update podio version formatting (#16321)
* update podio version formatting

* [podio] formatting fixes
2020-04-27 11:01:09 -05:00
vvolkl
eda886f627 [dd4hep] url and other fixes (#16320) 2020-04-27 11:00:10 -05:00
Toyohisa Kameyama
d59f7398a3 MODYLAS: New package (#16317) 2020-04-27 10:57:14 -05:00
darmac
5938499be7 Add new package: stinger (#16316) 2020-04-27 10:55:07 -05:00
darmac
81b5475f8e Add new package: smartdenovo (#16310) 2020-04-27 09:55:35 -05:00
Massimiliano Culpo
fe46919e19 tulip: added new package at v5.4.0 (#16319)
closes #3479

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>
2020-04-27 09:54:49 -05:00
George Hartzell
3f54e73025 singularity: better info re post-install step (#16311)
The singularity info should actually suggest where you might find the info about the post-install steps.

Co-authored-by: george.hartzell <george.hartzell@sana.com>
2020-04-27 13:41:04 +02:00
Toyohisa Kameyama
0477f829a2 xabclib: added package at v1.03 (#16271) 2020-04-27 13:33:28 +02:00
asmaahassan90
35717b556b spglib: added libs property (#16318) 2020-04-27 13:26:10 +02:00
Christoph Junghans
3ea21fef4b votca-csg: Block gromacs@2020 and newer (#16315) 2020-04-27 04:57:26 -06:00
Massimiliano Culpo
6b648c6e89 Improve the coverage of spack.relocate (#15654)
This PR introduces trivial refactoring in:
- `get_existing_elf_rpaths`
- `get_relative_elf_rpaths`
- `get_normalized_elf_rpaths`
- `set_placeholder`

mainly to be more consistent with practices used in other 
parts of the code and to simplify functions locally. It also 
adds or reworks unit tests for these functions and extends 
their docstrings.

Co-authored-by: Patrick Gartung <gartung@fnal.gov>
Co-authored-by: Peter J. Scheibel <scheibel1@llnl.gov>
2020-04-27 12:17:32 +02:00
Toyohisa Kameyama
ca4de491ba ppOpen-APPL/AMR-FDM: New package (#16199)
* ppOpen-APPL/AMR-FDM: New package

* separate build and install.

* Fix description.
2020-04-26 22:09:06 -05:00
Axel Huebl
4f3cc19ec7 qt: fix macOS w/ AppleClang (mesa libs) (#16302)
Building the `py-jupyter` stack on macOS with AppleClang breaks on
the `py-qtconsole` -> `py-qtconsole` -> `qt +opengl` package build
environment setup with:
```
 ==> Error: AttributeError: Query of package 'mesa' for 'libs' failed
 ...
 ==> Error: Failed to install qt due to ChildError: AttributeError: Query of package 'mesa' for 'libs' failed
```

This tries to add more library targets build by `mesa` to avoid this.
2020-04-26 17:07:13 -07:00
Axel Huebl
199ce66a3c libpciaccess: mirror (#16312)
Support mirrors for libpciaccess downloads.
2020-04-26 17:06:37 -07:00
Axel Huebl
af7e323f67 libbsd: mirror (#16313)
Add a mirror for `libbsd` to improve fetch stability.
libbsd.freedesktop.org sometimes failes in my nightly CI/CD scripts.
2020-04-26 17:06:27 -07:00
Axel Huebl
e8efeda14a py-profilehooks (new package) (#16305)
Adds the py-profilehooks package.
2020-04-26 17:08:21 -05:00
Axel Huebl
f202023876 py-blosc (new package) (#16307)
Add the py-blosc python package.
2020-04-26 11:46:40 -05:00
Axel Huebl
31e8d646af py-h5py: master (new version) (#16306)
Add the `master` branch of h5py as a version.
2020-04-26 11:45:04 -05:00
Adam J. Stewart
63a0647282 PyTorch: disable XNNPACK build (#16304) 2020-04-26 11:29:52 -05:00
Axel Huebl
75042c381c LLVM lldb 10.0: Python Link Dependency (#16299)
* LLVM: Python Dependency

Effort to expose the linked python library when building LLVM.
This might fix the forward propagation of libintl that comes
with the static python library build on darwin.

* LLDB Py: Remove Ignored Old Flags

Changed in LLVM 10.0+
2020-04-25 21:36:08 -07:00
Adam J. Stewart
4cd537f6c7 py-pyyaml: add new version and variant (#16301) 2020-04-25 15:43:14 -05:00
Adam J. Stewart
b5be99cdb7 libyaml: add new version (#16300) 2020-04-25 15:42:40 -05:00
Sajid Ali
9b0e4cd20b ucx : add version, modify variants (#16252)
* fixes

* remove extra newline
2020-04-25 12:39:33 -05:00
Adam J. Stewart
9bd0b0fbe1 py-spacy: add new package (#16293) 2020-04-25 10:35:57 -05:00
Jonathon Anderson
b796d2736c Version bump: jdk 14 (#15821) 2020-04-25 10:35:33 -05:00
Adam J. Stewart
5fce2ac96b py-thinc: add new package (#16295) 2020-04-24 23:50:56 -05:00
Joseph Ciurej
914f380bb6 Improved the accuracy of the dependencies for the 'visit' package. (#16297)
Added a fix for the 'visit' package when building variant '@3%gcc'.
2020-04-24 21:25:48 -05:00
Adam J. Stewart
b5bf816577 py-preshed: add new package (#16292) 2020-04-24 21:24:33 -05:00
Adam J. Stewart
d0ccab7d17 py-srsly: add new package (#16294) 2020-04-24 20:01:22 -05:00
Adam J. Stewart
dbd0fe8190 py-wasabi: add new package (#16296) 2020-04-24 20:01:09 -05:00
Adam J. Stewart
7a2f47d181 py-plac: add new package (#16291) 2020-04-24 20:00:55 -05:00
Adam J. Stewart
510d8821e5 py-nltk: add new package (#16290) 2020-04-24 20:00:42 -05:00
Adam J. Stewart
0ee023d29f py-murmurhash: add new package (#16289) 2020-04-24 20:00:28 -05:00
Adam J. Stewart
ab87617d55 py-cymem: add new package (#16288) 2020-04-24 20:00:15 -05:00
Adam J. Stewart
3153610bb8 py-catalogue: add new package (#16287) 2020-04-24 20:00:02 -05:00