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14947 Commits

Author SHA1 Message Date
Axel Huebl
d8ba71993c
openPMD-api: 0.13.2 (#21450) 2021-02-02 14:25:18 -08:00
Andrew-Dunning-NNL
09190c0876
py-bash-kernel: new package (#21441) 
* py-bash-kernel: new package

* py-bash-kernel: remove git bash kernel dependency
 2021-02-02 15:42:08 -06:00
Bryan Herman
182ab78940
add py-python-fsutil recipe (#21449) 2021-02-02 15:41:21 -06:00
Mark W. Krentel
040204c261
intel-xed: add patch to 12.0.1 to fix segfault (#21436) 
Fix segfault due to uninitialized data when trying to decode some cases of data that aren't a valid instruction.
 2021-02-02 12:40:24 -08:00
bryanherman
d048048911
py-nbsphinx: new package (#21444) 
* added py-nbsphinx package

* added a comment about nbsphinx use
 2021-02-02 11:24:28 -06:00
Andrew-Dunning-NNL
959df6bb12
py-grandalf: new recipe (#21348) 
* py-grandalf: new recipe

* py-grandalf: add runtime dependency

* py-grandalf: add runtime dependency)
 2021-02-02 11:22:36 -06:00
Andrew-Dunning-NNL
59a54905ea
py-dictdiffer: fix offline dependencies (#21345) 
* py-dictdiffer: fix offline dependencies

* Update var/spack/repos/builtin/packages/py-dictdiffer/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-02-02 11:21:58 -06:00
Andrew-Dunning-NNL
8b6c468cdf
py-ftfy: new recipe (#21333) 
* py-ftfy: new recipe

* py-ftfy: depend on python>3.5
 2021-02-02 11:19:02 -06:00
Andrew-Dunning-NNL
71309f75b2
py-dulwich: new recipe (#21330) 
* py-dulwich: new recipe

* py-dulwhich: add python dependency

* py-dulwich: fix flake8 whitespace
 2021-02-02 11:15:34 -06:00
Andrew-Dunning-NNL
49b3ab684e
py-flatten-dict: new recipe (#21329) 
* py-flatten-dict: new recipe

* Update var/spack/repos/builtin/packages/py-flatten-dict/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-flatten-dict: fix dependencies

* py-flatten-dict: fix dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-02-02 11:14:12 -06:00
apreifsteck
df0cc9ee02
OSU mvapich2 GDR 2.3.5 package.py update (#21270) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: NOWLAB PACKAGER <mvapich-help@cse.ohio-state.edu>
 2021-02-01 18:48:16 -08:00
Sergei Shudler
8f2acc3123
mfem: Add e4s testsuite-inspired smoke test (#21228) 2021-02-01 17:49:20 -08:00
Desmond Orton
71b12e9b27
New R Package Pegas@0.14 (#21359) 2021-02-01 16:42:44 -08:00
Desmond Orton
6cc23e6137
New Feature r-quickplot (#21430) 2021-02-01 18:02:14 -06:00
iarspider
eac95c866a
FastJet: add optional patch to make random generator thread-local (#21395) 2021-02-01 11:18:04 -08:00
Phil Carns
03fce1f0c9
replace margo pkg with updated mochi-margo pkg (#20273) 2021-02-01 12:38:02 -06:00
iarspider
586ff05af1
New package: frontier-client (#21405) 2021-02-01 10:23:56 -08:00
iarspider
5add6c4e03
New package: unigen (#21338) 2021-02-01 10:21:02 -08:00
Ryan Mast
5cb8d1894b
libgcrypt: add versions up to 1.9.1 (#21401) 2021-02-01 10:11:51 -08:00
Jose E. Roman
4523cce791
SLEPc: add v3.14.2 (#21422) 2021-02-01 09:42:13 -08:00
Adam J. Stewart
1d636bed6a
R: add maintainer(s) (#21119) 
* R: add maintainer(s)

* Add maintainer to base class
 2021-02-01 11:33:33 -06:00
Andrew-Dunning-NNL
f781403615
py-colored-traceback: new package (#21423) 2021-02-01 11:14:00 -06:00
eugeneswalker
0b58499d7a
llvm: "master" branch is now "main" branch (#21411) 2021-02-01 08:32:36 -06:00
iarspider
af988fc32d
sqlite: add v3.32.03 (#21417) 2021-02-01 15:04:19 +01:00
Tomoki, Karatsu
6feb697b62
abinit: fix build with Fujitsu compilers (#21213) 2021-02-01 15:03:03 +01:00
iarspider
260706c186
coin3d: depend on gl/glu (virtual packages), not on opengl/openglu (#21419) 2021-02-01 15:01:05 +01:00
Tomoyasu Nojiri
c279983c10
cgdb: add a few build dependencies (#20927) 2021-02-01 15:00:52 +01:00
Jean-Paul Pelteret
a04e0d2525
Add package: py-beancount (#21274) 
* Add package: py-beancount

* Fixes
 2021-01-31 12:29:29 -06:00
darmac
f7929aaeb1
chrony: add missing dependency (#21403) 2021-01-31 12:21:23 -05:00
Jean-Paul Pelteret
6ac3d98f4c
Add package: py-flask-babel (#21272) 2021-01-31 10:50:16 -06:00
Jean-Paul Pelteret
6c03c9996a
Add package: py-markdown2 (#21273) 2021-01-31 10:49:49 -06:00
Adam J. Stewart
c950f4a4ff
py-numpy: add v1.20.0 (#21409) 2021-01-31 06:28:21 +01:00
Toyohisa Kameyama
c175c05af9
quantum-expresso: fix for Fujitsu compiler (#21368) 2021-01-29 17:36:58 -08:00
Harmen Stoppels
371247c14a
Fix https://github.com/spack/spack/pull/21391#issuecomment-769961025 (#21397) 2021-01-29 17:21:56 -08:00
Massimiliano Culpo
13ac7198d3
clingo: added a package with option for bootstrapping clingo (#20652) 
* clingo/clingo-bootstrap: added a package with option for bootstrapping clingo

package builds in Release mode
uses GCC options to link libstdc++ and libgcc statically

* clingo-bootstrap: apple-clang options to bootstrap statically on darwin

* clingo: fix the path of the Python interpreter

In case multiple Python versions are in the same prefix
(e.g. when clingo is built against an external Python),
it may happen that the Python used by CMake does not
match the corresponding node in the current spec.

This is fixed here by defining "Python_EXECUTABLE"
properly as a hint to CMake.

* clingo: the commit for "spack" version has been updated.
 2021-01-29 12:22:57 -08:00
Robert Underwood
0611036abd
doxygen: add support for external detection (#20642) 2021-01-29 21:05:48 +01:00
Peter Lindstrom
0f82fa5151
zfp: several package improvements (#21244) 
- add variants for build targets, language bindings, backends
- ensure selected variants are compatible with zfp version
- point to GitHub (not LLNL) tar balls
- add dependencies
- update link to homepage
- add maintainers

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2021-01-29 17:51:30 +01:00
albestro
47c85059fb
it seems like there was a bug in the version of APEX that we set by default in 1.5.x (#21391) 2021-01-29 16:51:28 +01:00
a-saitoh-fj
9761c13878
dssp: added smoke tests (#21366) 2021-01-29 10:29:42 +01:00
Tomoyasu Nojiri
e3a0c48599
py-cheetah: restrict valid python interpreter to 2.7.X, add v2.4.4 (#21363) 2021-01-29 09:43:43 +01:00
Tomoyasu Nojiri
7b6c99655c
py-cheetah3: add new package at v3.2.6 (#21387) 2021-01-29 09:41:32 +01:00
Tomoyasu Nojiri
bc639fe60b
wtdbg2: enable build for aarch64 (#21390) 
Use sse2neon to maintain the same API calls for aarch64
 2021-01-29 09:37:00 +01:00
Tomoyasu Nojiri
b18479a2bd
swarm: add v3.0.0 (#21389) 2021-01-29 09:18:41 +01:00
Adam J. Stewart
519ba5590c
py-graphviz: add v0.8.4 (#21383) 2021-01-28 18:25:07 -08:00
Cyrus Harrison
57c23b964a
add new package: bloaty (#21355) 2021-01-28 16:44:07 -08:00
Dan Lipsa
5a9da90d07
Use utf8 for latex build. (#21360) 
Patch provided by @Billae

Avoid the following error:
  File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 768, in _writer_daemon
    line = _retry(in_pipe.readline)()
  File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 830, in wrapped
    return function(*args, **kwargs)
  File "/usr/lib/python3.8/codecs.py", line 322, in decode
    (result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x97 in position 220: invalid start byte
 2021-01-28 15:58:55 -05:00
Massimiliano Culpo
f523ea8c4e
perl: add v5.32.1 (#21375) 
Make it such that BigSur is seen as 10.16 rather than 11.1, since the latter causes troubles with Perl configuration
 2021-01-28 21:54:28 +01:00
Desmond Orton
b095dfb44b
New Package r-fpCompare@0.2.3 (#21380) 2021-01-28 14:29:57 -06:00
iarspider
f28026c040
pacparser: new package at v1.3.7 (#21372) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2021-01-28 20:42:53 +01:00
Tomoyasu Nojiri
6ae8d5c380
openmx: Fix for aarch64 (#21367) 2021-01-28 10:20:18 -08:00
Ali Ahmed
b6d52fa466
New package: libpulsar (#21369) 2021-01-28 10:12:12 -08:00
Adam J. Stewart
aa15246280
py-matplotlib: add v3.3.4 (#21378) 2021-01-28 10:09:17 -08:00
bryanherman
ff8ef48806
New package: py-pytest-doctestplus (#21335) 
* added package py-pytest-doctestplus

* setuptools required for run
 2021-01-28 11:00:03 -06:00
bryanherman
ff0a92e6a8
New package: py-pytest-openfiles (#21339) 
* added package py-pytest-openfiles

* remove wheel dep
 2021-01-28 10:59:35 -06:00
bryanherman
bf33fe4805
openmc: add v0.11.0, v0.12.0 (#21349) 
Also added new variants to fine tune the build
 2021-01-28 17:04:34 +01:00
iarspider
9baecd0d78
umesimd: add new package (#21370) 2021-01-28 16:22:21 +01:00
Sergey Kosukhin
d577b6fcdf
autoconf: fix v2.70 and patching procedure of bin/autom4te.in (#21255) 
This PR adds:

1.  A patch that fixes a bug in version 2.70 
    (will be fixed upstream in the next release: https://savannah.gnu.org/support/?110396).
2. A fix for the way we patch shebang in bin/autom4te.in. 

For 2, we need to keep the original modification timestamp of the file. 
Otherwise, we either get an empty man page for autom4te (versions 2.69 and before)
or a failure at the build time (versions 2.70 and after). 

The difference has to do with the update of the missing script: https://git.savannah.gnu.org/cgit/automake.git/commit/lib/missing?id=a22717dffe37f30ef2ad2c355b68c9b3b5e4b8c7

It will take time until developers of Autotools-based packages adjust their scripts 
to the new version, therefore, 2.69 is marked as preferred.
 2021-01-28 11:21:04 +01:00
Adam J. Stewart
5b4d636d73
Clingo: fix missing import (#21364) 2021-01-28 00:38:01 -08:00
Tomoyasu Nojiri
181f921c1a
libpeas: restrict python version range, use pkgconfig virtual dependency (#21313) 2021-01-28 09:31:54 +01:00
Tomoyasu Nojiri
bcb0e80548
fox: add dependency to glu virtual package (#21280) 2021-01-28 09:29:36 +01:00
Jen Herting
0ebefcc92b
New package: py-proglog (#20750) 
* [py-proglog] created template

* [py-proglog] added dependencies

* [py-proglog] fixed pypi url

* [py-proglog] removed fixmes, added homepage and description

* [py-proglog] url -> pypi

* [py-proglog] added dependency on setuptools
 2021-01-27 20:59:19 -06:00
Rao Garimella
3dc5ffaf65
Update MSTK version (#21356) 
* New interface reconstruction package

* forgot to put in CMake option for Jali

* cleanup whitespace

* fix lines with more than 79 chars

* more long line cleanup

* fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos

* New interface reconstruction package

* forgot to put in CMake option for Jali

* cleanup whitespace

* fix lines with more than 79 chars

* more long line cleanup

* fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos

* fix bugs in CMake section

* more compact cmake block

* update hash for 1.2.10 and add 1.2.11

* update recipe for Portage 3.0.0

* removing old versions - they won't build with the new recipe and the url specification doesn't work for them

* update version to 3.3.6

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
 2021-01-27 20:58:02 -06:00
bryanherman
fe05b16922
New package: py-pytest-benchmark (#21324) 
* added pytest-benchmark recipe

* Update var/spack/repos/builtin/packages/py-pytest-benchmark/package.py

Added Python2 dependence.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-27 20:57:24 -06:00
bryanherman
d1ce461a81
New package: py-pytest-cpp (#21328) 
* added package py-pytest-cpp

* Update var/spack/repos/builtin/packages/py-pytest-cpp/package.py

package is !=5.4.0 use @:5.3.999

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-27 20:57:09 -06:00
bryanherman
4efeb39e95
New package: py-pytest-timeout (#21340) 
* added package py-pytest-timeout

* Update var/spack/repos/builtin/packages/py-pytest-timeout/package.py

Added Python2.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-27 20:56:52 -06:00
bryanherman
f7a47e4048
New package: py-openmc (#21351) 
* added package py-openmc

* Update var/spack/repos/builtin/packages/py-openmc/package.py

specify branch when using branch names for versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

use run after fixture to install openmc lib

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

Simplify copying openmc library to py-openmc prefix using install

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

NumPy should be 1.9+

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix paren missing

* Update var/spack/repos/builtin/packages/py-openmc/package.py

fixed parens

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

use v0.11.0 in URL

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-27 20:56:35 -06:00
eugeneswalker
74fbad4742
autoconf: add version 2.70 (#21362) 2021-01-27 17:59:03 -08:00
Stephen Herbein
71375b3446
flux: update to latest releases (#21306) 2021-01-27 17:56:45 -08:00
bryanherman
cc28bcddd1
fix cpio for intel@18 (#21322) 2021-01-27 17:48:26 -08:00
Harmen Stoppels
3172fc3681
Add conflict for mpich 3.4.x for clang <= 7" (#21326) 2021-01-27 17:45:38 -08:00
Michael Kuhn
f9fef22ce8
rdma-core: add 33.1 (#21361) 2021-01-27 17:31:01 -08:00
Greg Becker
0d521d56ec
openmpi find external fixup (#21354) 2021-01-27 15:27:17 -08:00
Desmond Orton
18b3688cd1
Package/spades (#21227) 
Co-authored-by: codeandkey <jtst@iastate.edu>
 2021-01-27 23:28:37 +01:00
bryanherman
71bac42357
added gawk version 5.1.0 (#21342) 2021-01-27 13:48:53 -08:00
Christoph Junghans
6b63441281
libecpint: initial add (#21353) 
* libecpint: initial add

* flake8
 2021-01-27 14:19:48 -07:00
Rémi Lacroix
5ef2daaa4a
ELPA: Switch to HTTPS links. (#21352) 2021-01-27 22:06:44 +01:00
Andrew-Dunning-NNL
895c8b33d9
py-dpath: new recipe (#21331) 2021-01-27 14:46:40 -06:00
bryanherman
68a144eaa3
added package py-pytest-flakes (#21337) 2021-01-27 14:38:30 -06:00
Andrew-Dunning-NNL
52c32047ad
py-mailchecker: new recipe (#21346) 2021-01-27 14:33:23 -06:00
Andrew-Dunning-NNL
54f163f7dc
py-jsonpath-ng: new recipe (#21347) 2021-01-27 14:23:20 -06:00
Brian Van Essen
3cbc35dbdd
LBANN: add support for building with OneDNN. (#21305) 2021-01-27 21:11:31 +01:00
Brian Van Essen
aac3699748
OneDNN: add versions up to v2.1-rc (#21304) 2021-01-27 21:10:16 +01:00
Rao Garimella
f2c98a8537
portage: added v3.0.0, deleted old versions (#21293) 
old versions won't build with the new recipe and the url 
specification doesn't work for them

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
 2021-01-27 20:13:22 +01:00
Ben Morgan
5667759bf5
vecgeom: add v1.1.9 release (#21341) 2021-01-27 19:50:31 +01:00
Sergey Kosukhin
3cc5b7adc7
Python extensions: consistently set LDSHARED to get Spack RPATHs (#21149) 
Python extensions use CC and LDSHARED from the sysconfig module to
build. When Spack installs Python, it replaces the Spack compiler
wrappers in these values with the underlying compilers (since these
wrappers are not useful outside of the context of running Spack).
In order to use the Spack compiler wrappers when building Python
extensions with Spack, Spack sets the LDSHARED environment variable
when running `Python.setup_py` (which overrides sysconfig). However,
many Python extensions use an alternative method to build (namely
PythonPackage.setup_py), which meant that LDSHARED was not set (and
RPATHs were not inserted for dependencies).

This commit makes the following changes:

* Sets LDSHARED in the environment: this applies to all commands
  executed during the build, rather than for a single command
  invocation
* Updates the logic to set LDSHARED: this replaces the compiler
  executable in LDSHARED with the Spack compiler wrapper. This
  means that for some externally-built instances of Python,
  Spack will now switch to using the Spack wrappers when building
  extensions. The behavior is expected to be the same for Spack-
  built instances of Python.
* Performs similar modifications for LDCXXSHARED (to ensure RPATHs
  are included for C++ codes)
 2021-01-27 10:20:36 -08:00
William Downs
6ba2e3ee5d
gchp: added new package (#21310) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2021-01-27 18:02:55 +01:00
Luca Heltai
8a7487773b
dealii: added support for simplices, updated sundials (#20621) 2021-01-27 17:02:15 +01:00
bryanherman
c52e95d681
cxxtest: added new package (#21323) 2021-01-27 16:26:26 +01:00
bryanherman
fbdc8b65b1
mesa: add dependency on zlib (#21325) 
When installing mesa in an offline environment, mesa tries to download zlib.
 2021-01-27 15:19:03 +01:00
Baptiste Jonglez
0efe54f722
mxnet: Fix python lib installation (#21298) 2021-01-27 07:53:09 -06:00
Ben Morgan
561557d2f5
py-h5py: add build dependency on py-wheel (#21320) 
h5py requires wheel at build time from version 3.0.0, based on
the project's pyproject.toml.
 2021-01-27 08:43:21 -05:00
Brian Van Essen
b8b432c3aa
lbann: add support for building just the LBANN core library (#21235) 
Variants to disable vision libraries and NumPy support.
 2021-01-27 13:42:49 +01:00
bryanherman
cbdf87cd28
boost: restrict lower bound of ranges for two patches (#21321) 2021-01-27 13:28:29 +01:00
Mohan
4977dcfe9b
knem: added a patch for v1.1.4 (#21312) 
Co-authored-by: amd-toolchain-support <toolchainsupport@amd.com>
 2021-01-27 13:27:10 +01:00
Brian Spilner
258bfff1da
cdo: add v1.9.10 (#21315) 2021-01-27 11:32:49 +01:00
takanori-ihara
e83cce313b
fujitsu-ssl2: remove mentions of libfj90rt2.a (#21308) 2021-01-27 11:32:23 +01:00
Glenn Johnson
84234e224c
mafft: add v7.475 and build extensions (#21301) 2021-01-27 10:55:51 +01:00
darmac
88325cada8
r-xvector: add dependency on zlib (#21286) 2021-01-27 10:22:34 +01:00
Tomoyasu Nojiri
503f2f1bbc
xterm: add dependency on termcap (#21314) 2021-01-27 09:50:21 +01:00
Brian Van Essen
46153a8201
NVSHMEM package (#21279) 2021-01-27 09:49:53 +01:00
Baptiste Jonglez
3626ab2697
libsodium: Fix build on ppc64le (#21256) 
On ppc64le and aarch64, Spack tries to execute any "config.guess" and
"config.sub" scripts it finds in the source package.

However, in the libsodium tarball, these files are present but not
executable.  This causes the following error when trying to install
libsodium with spack:

    Error: RuntimeError: Failed to find suitable substitutes for config.sub, config.guess

Fix this by chmod-ing the scripts in the patch() function of libsodium.
 2021-01-27 09:40:10 +01:00
Michael Kuhn
0366d49c6e
mpich: add 3.4.1 (#21302) 2021-01-26 23:13:14 +01:00
Anton Loukianov
fe35ada685
nextflow: new version (#21276) 2021-01-26 22:59:49 +01:00
Vicente Bolea
104c826e33
ParaView: add ParaView-5.9.0 new release (#21268) 2021-01-26 22:58:48 +01:00
bryanherman
5cd0a9ab8e Update var/spack/repos/builtin/packages/py-shtab/package.py 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-26 15:24:18 -06:00
bryanherman
86c906e24f Update var/spack/repos/builtin/packages/py-shtab/package.py 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-26 15:24:18 -06:00
bryanherman
52630d9b96 Update var/spack/repos/builtin/packages/py-shtab/package.py 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-26 15:24:18 -06:00
Bryan Herman
430b7f3ebd added package py-shtab 2021-01-26 15:24:18 -06:00
bryanherman
4a6676c441 Update var/spack/repos/builtin/packages/py-paramiko/package.py 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-26 15:23:17 -06:00
Bryan Herman
b527e43615 added invoke variant to py-paramiko 2021-01-26 15:23:17 -06:00
Bryan Herman
3455647011 added package py-sortedcollections 2021-01-26 15:23:02 -06:00
bryanherman
4e465e230e Update var/spack/repos/builtin/packages/py-rich/package.py 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-26 15:22:48 -06:00
bryanherman
93a7f57299 Update var/spack/repos/builtin/packages/py-rich/package.py 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-26 15:22:48 -06:00
bryanherman
eb1270d917 Update var/spack/repos/builtin/packages/py-rich/package.py 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-26 15:22:48 -06:00
Bryan Herman
53f299d0d5 dont cap future python versions 2021-01-26 15:22:48 -06:00
Bryan Herman
08413844f1 added py-rich package 2021-01-26 15:22:48 -06:00
Paul
c03a2d0697
Added Go versions 1.15.7 and 1.14.14 (#21294) 2021-01-26 22:19:13 +01:00
Harsh Bhatia
04225d3cef new package: callflow 2021-01-26 14:40:28 -06:00
Harsh Bhatia
a4e67c35de added flask-cors 2021-01-26 14:40:28 -06:00
kean-smullen-nnl
889c86bdb1
dakota: fix build dependencies (#20697) 2021-01-26 19:04:39 +01:00
Erik Schnetter
325510da5c
qthreads: New version 1.16 (#21159) 2021-01-26 18:53:46 +01:00
Tomoyasu Nojiri
90009d67a9
py-prompt-toolkit: Add version 2.0.10 for py-spatialist (#21281) 2021-01-26 11:26:26 -06:00
bryanherman
6b16d61a80
Added package py-nanotime (#21287) 2021-01-26 11:22:19 -06:00
bryanherman
a678c1966f
added version 2.4.7 to py-pyparsing (#21290) 2021-01-26 11:18:03 -06:00
bryanherman
fbf13e19ed
added missing dep, py-wheel, to py-pynacl (#21292) 2021-01-26 11:16:26 -06:00
Claire Guilbaud
31cf77aec6
recipe: add version 6.1.1 for pytest (#20831) 
* recipe: add version 6.1.1 for pytest

add recipe for new dependency py-iniconfig
recipe: add version 6.1.1 for pytest

add recipe for new dependency py-iniconfig

* fix: 'SyntaxError: invalid syntax' during unittests

* requested changes on the pull request done

* requested changes on dep for py-pytest

* change constaint on python for importlib-metadata

* undo change on py-importlib-metada as requested

* bug fix

* bug fix on py-wcwidth

* fix as requested

* forget @ in when param

* forget a colon

* add new versions py-pytest and py-py

* fix setuptools* version

* add rule for more-itertools
 2021-01-26 09:08:36 -06:00
Harmen Stoppels
feaaa8b194
umpire's device allocator exports device functions, which requires static libs (#21264) 2021-01-26 15:57:10 +01:00
Baptiste Jonglez
79afe20bb0
mxnet: Add optional cuda_arch spec support, enable CUDA by default (#21266) 2021-01-26 07:58:41 -06:00
vvolkl
b45a31aefe
[dd4hep] fix assimp variant (#21226) 2021-01-26 08:57:13 +01:00
Jen Herting
eb60c858a0
New package: py-intel-openmp (#20748) 
* [py-intel-openmp] created template

* [py-intel-openmp] is wheel

* [py-intel-openmp] fixed version for linux

* [py-intel-openmp] removed fixmes, added homepage and description

* [py-intel-openmp] added macos support

* [py-intel-openmp] style fix
 2021-01-25 22:34:10 -06:00
Jen Herting
f536ded328
New package: py-bayesian-optimization (#20746) 
* [py-bayesian-optimization] created template

* [py-bayesian-optimization] added dependencies

* [py-bayesian-optimization] removed fixmes, added homepage and description

* [py-bayesian-optimization] added dependency on setuptools

* [py-bayesian-optimization] changed url to pypi and updated checksum

* [py-bayesian-optimization] url -> pypi
 2021-01-25 22:32:55 -06:00
Jean-Paul Pelteret
b5c9318160
Py-cheroot: Add dependency (#21271) 2021-01-25 22:31:51 -06:00
Tomoyasu Nojiri
48310e8988
process-in-process: Add systemtap depend (#21164) 2021-01-25 22:28:25 -06:00
Michael Kuhn
26d4d54a42
mpich: add 3.4 (#21007) 
This also switches the default device to ch4 and the default netmod to
ofi (tcp does not exist for ch4).
 2021-01-25 18:00:30 -06:00
Adam J. Stewart
5447dd6fb8
py-geopandas: add v0.8.2 (#21269) 2021-01-25 16:51:12 -06:00
Evan Bollig
cc006a7847
Updated gromacs for 2021.rc1. Updated GMX_GPU values (#20797) 2021-01-25 22:40:55 +01:00
ketsubouchi
ddf022d308
Itensor: Add new package (#20689) 2021-01-25 22:33:23 +01:00
albestro
3a8e04bfab
add drafts variant (#20643) 2021-01-25 22:32:13 +01:00
Thomas Madlener
4e6b5282c9
Delphes: add 3.4.3pre08 tag as version (#21221) 2021-01-25 22:29:29 +01:00
Chris Richardson
ced55fbfe7
Fenicsx: update for basix (#21220) 2021-01-25 22:29:06 +01:00
Tomoyasu Nojiri
5af2b1a933
gdl: Add libtirpc and libgeotiff depend (#21212) 2021-01-25 22:28:15 +01:00
Peter Scheibel
fd8d14f7c5
Kokkos package: rocm support (#21157) 2021-01-25 22:19:54 +01:00
Baptiste Jonglez
7bed6a7077
mxnet: Fix cuda build (#21267) 2021-01-25 22:09:56 +01:00
Axel Huebl
ef2e1bc3f7
WarpX: Increase openPMD-api Dependency (#21263) 2021-01-25 22:08:53 +01:00
Baptiste Jonglez
7d7315ba93
libsodium: Fix download URLs for older versions (#21257) 2021-01-25 22:07:53 +01:00
Adam J. Stewart
37bbe21692
expect: add v5.45.4 and fix build with Apple Clang (#21232) 2021-01-25 22:04:09 +01:00
darmac
3893ce8f71
es-shell: add missing dependency on YACC (#21234) 2021-01-25 16:32:28 +01:00
Vicente Bolea
bfa480d87d
pugixml: add v1.11.4 (#21224) 2021-01-25 14:16:50 +01:00
iarspider
2378376aa9
py-pythonsollya: new package (#21241) 2021-01-25 13:44:28 +01:00
iarspider
9d1d37c432
sollya: new package at v7.0 (#21240) 2021-01-25 09:33:56 +01:00
Adam J. Stewart
05c4506b62
py-pygeos: add v0.9 (#21243) 2021-01-25 09:25:33 +01:00
lpoirel
dd505e2269
petsc: forward variant +int64 to parmetis (#21245) 2021-01-25 08:41:29 +01:00
ketsubouchi
b2f89f8157
imake: add run dependency to xorg-cf-files (#21251) 2021-01-25 08:18:06 +01:00
Pariksheet Nanda
91db8c5234
picard: add v2.24.0 (#21249) (#21250) 2021-01-25 08:12:58 +01:00
Phil Carns
f269b4d7c1
opa-psm2: add v11.2.185 (#21208) 
- also update to reflect Cornelis Networks as source maintainer rather Intel
- also replace explicit install prefix patch with edit step file filter
 2021-01-25 07:33:59 +01:00
iarspider
577f6e8ade
New package: mpfi (#21238) 2021-01-24 17:54:52 -06:00
Glenn Johnson
cf35661d3c
Updates of R CRAN packages (#21223) 2021-01-24 17:54:25 -06:00
lpoirel
88cafacd09
petsc: add a +mkl-pardiso variant (#21219) 
* petsc: add a +mkl-pardiso variant

mkl_pardiso solver is distributed with intel-mkl

* petsc: depend on mkl instead of intel-mkl

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-24 12:09:35 -06:00
iarspider
8f45b27836
New package: py-bigfloat (#21239) 
* New package: py-bigfloat

* Changes from review
 2021-01-23 16:27:42 -06:00
iarspider
e791725180
New package: fplll (#21236) 
* New package: fplll

* Change from review
 2021-01-23 16:26:48 -06:00
bryanherman
5a2fe8add3
Fix git svn modules (#21169) 
* added Git run env to support svn variant modules

* perl-alien-svn needs arp-util to be link

* Update var/spack/repos/builtin/packages/git/package.py
 2021-01-23 10:33:39 -05:00
Pieter Ghysels
dba6a26920
Add strumpack v5.1.0, add support for ROCm/HIP (#21203) 2021-01-23 09:31:23 +01:00
Nicholas Sly
82ada16668
Add flang variant to llvm package. (#21229) 
Co-authored-by: sly <sly@lanl.gov>
 2021-01-22 15:39:44 -08:00
Baptiste Jonglez
49f0e9640d
cuda: add installation workaround for version 10.1.243 on ppc64le (#21200) 
Fixes #21170
 2021-01-22 14:27:14 -08:00
arjun-raj-kuppala
cdb9b10e27
Bump up rocm version 4.0.0: rocm-gdb and mivisionx (#21137) 2021-01-22 18:04:01 +01:00
ketsubouchi
2d6fea86d6
py-pygit2, libgit2: add new versions (#21160) 2021-01-22 09:59:01 -06:00
Chuck Atkins
14f6d64edf
adios2: Fix dependency issues (#21211) 
- Typo in the SZ version (:ver should have been ver:)
- Patch to fix python dependency when testing is disabled
 2021-01-22 10:31:21 -05:00
René Widera
1026eb2186
isaac-server: add v1.5.1 and v1.5.2 (#21217) 
Add latest releases of isaac-server and adjust jansson requirements.
 2021-01-22 15:30:57 +01:00
Adam J. Stewart
99e36bcef6
py-scikit-learn: add v0.24.1 (#21158) 2021-01-22 14:32:23 +01:00
Adam J. Stewart
551105749b
py-pandas: add v1.2.1 (#21176) 2021-01-22 14:28:24 +01:00
Adam J. Stewart
ccb5cc50f7
TensorFlow: add v2.4.1 (#21205) 2021-01-22 14:12:37 +01:00
Dr. Christian Tacke
1961dc5f51
xrootd: add v4.12.6, v5.0.3; drop preferred (#21199) 
Add version 4.12.6, 5.0.3

I think, the preferred was there to keep version 4.
But that's why we have spack, because people can install
whatever version they want.

And root has a properly versioned dependency.
 2021-01-22 14:10:54 +01:00
Jen Herting
f50f67f4db
py-memprof: new package (#20730) 2021-01-22 14:07:16 +01:00
Jen Herting
3b38e4345f
py-filterpy: new package (#20747) 2021-01-22 14:06:34 +01:00
Tomoyasu Nojiri
f6db2f4da4
cnvnator: add -lcrypto to Makefile. (#21209) 2021-01-22 13:50:05 +01:00
René Widera
4b466d06f4
isaac: add v1.5.1 and v1.5.2 (#21216) 2021-01-22 13:11:28 +01:00
arjun-raj-kuppala
f41317d8b2
AMD ROCm: Bump rocm-tensile with 3.9.0, 3.10.0, 4.0.0 releases (#20439) 2021-01-22 13:07:36 +01:00
Dominik Gresch
ec7caefc69
Add Quantum ESPRESSO version 6.7. (#21192) 2021-01-22 09:58:30 +01:00
Harmen Stoppels
d42d9a619a
add patch for not linking to clang rt bulitin lib, and apply patches to 3.9.0 too (#20937) 2021-01-22 09:55:46 +01:00
Tom Payerle
f7064fa181
mumps: Fix for problematic src/makefile patch (#20590) (#20758) 
* mumps: Fix for problematic src/makefile patch (#20590)

Minor change in src/Makefile between 5.2.0 and 5.3.3 causing patch to
break.  Split into 2 patchfiles

* mumps: Additional patch for fixing #20590

This is to fix issue wherein build fails on Ubuntu due to undefined
symbols, despite symbols being included in other libraries referenced
on the compilation line.  I believe the issue is that the inclusion
of libsmumps.so was (due to my original patch) causing
libmumps_common.so to be automatically loaded, but since libpords.so
was not also required, the error was occuring.  I have added libpords.so
along with libmumps_common.so to be explicit dependencies of
libsmumps.so, etc., which seems to resolve the issue.
 2021-01-21 20:41:11 -08:00
mic84
9ed4eb7a9a
amrex: fix missing hdf5 dependency (#20714) 
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2021-01-21 16:16:55 -08:00
Kurt Sansom
06f65afdd5
hdf: build with gcc10 (#20773) 2021-01-21 17:07:28 -06:00
Chuck Atkins
3d54ca4d5a
ecp-data-vis-sdk: Disable broken cinema variant (#21204) 2021-01-21 15:42:25 -05:00
Baptiste Jonglez
af1eda5359
miniconda3: add ppc64le package version (#21196) 
It requires reorganizing version definitions to facilitate adding new architectures.

This is inspired from the cuda package.
 2021-01-21 14:36:36 -06:00
Omar Padron
b76d21710b
Add develop versions of faodel and zfp (#21201) 
* add master version of faodel

* add develop version of zfp
 2021-01-21 14:12:21 -05:00
Sreenivasa Murthy Kolam
85ea52acd1
fix build failure due to #20759 change (#21185) 2021-01-21 18:13:28 +01:00
Tomoyasu Nojiri
6e258ca6ca
catalyst: Fix for aarch64 (#21187) 2021-01-21 10:50:08 -06:00
Brian Van Essen
d3a078c7da
Add support for building with an FFT layer in LBANN. Updated the (#21184) 
HWLOC requirements to properly include CUDA and NVML variants as
appropriate.
 2021-01-21 10:49:53 -06:00
arjun-raj-kuppala
90a7c846f6
install lib/headers option support (#21186) 2021-01-21 10:47:55 -06:00
Tomoki, Karatsu
2957f76cb1
abinit: add version 8.10.2. (#21188) 2021-01-21 10:46:12 -06:00
vvolkl
2c6c6756a8
[assimp] add new version 5.0.1 (#21191) 2021-01-21 10:45:21 -06:00
Harmen Stoppels
0cf0be588b
Always set SPLA_OMP and SPLA_STATIC (#21195) 2021-01-21 10:43:57 -06:00
Gerasimos Chourdakis
1ceab34fc8
precice: Add version 2.2.0 (#21166) 2021-01-21 09:38:53 -06:00
Jen Herting
d9a8ff455e
[py-numba] added version 0.51.1 (#21182) 
* [py-numba] added version 0.51.1

* [py-numba] updated llvmlite dependencies
 2021-01-21 09:38:35 -06:00
Rémi Lacroix
afa536fc1d
Plumed: Add a new ArrayFire variant. (#20624) 2021-01-21 09:29:11 -06:00
Rémi Lacroix
6f166283ca
ArrayFire improvements (#20615) 
* ArrayFire: Add version 3.7.2.

* ArrayFire: Allow using MKL as the FFTW provider.

* ArrayFire: Ensure the libraries are properly found.

The required backend(s) can be specified in the library query.
 2021-01-21 09:29:00 -06:00
Simon Frasch
10baa48d95
spfft: add version 1.0.1 (#21193) 2021-01-21 15:23:01 +01:00
Scott McMillan
fcf99be939
openssl: remove preprocessor flags incompatible with NVIDIA HPC SDK (#21180) 
* openssl: remove preprocessor flags incompatible with NVIDIA HPC SDK

* Update var/spack/repos/builtin/packages/openssl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-20 21:42:53 -06:00
Toyohisa Kameyama
c5ed46e026
libcap-ng: fix detect python. (#21162) 
* libcap-ng: fix detect python.

- add python variant.
- add --with-python and --with-python3 configure option.

* fix style.

* - Add python variant.
- change - to --
 2021-01-20 21:42:36 -06:00
Tomoyasu Nojiri
bf3fb8428d
util-linux: Add ncurses depend (#21165) 2021-01-20 21:40:03 -06:00
Tomoyasu Nojiri
644b8b52e2
systemtap: Add depend (#21163) 
* systemtap: Add depend

* systemtap: Fix depend
 2021-01-20 21:31:04 -06:00
Scott McMillan
2ea336e6aa
libevent: Remove compiler flags incompatible with NVIDIA HPC SDK (#21181) 
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2021-01-20 17:38:34 -06:00
Greg Sjaardema
6ecc3fc06f
SEACAS: New version v2021-01-20 (#21178) 
Added a new version due to new application `nas2exo` and also adding the build of `slice` if `+applications` is specified.
 2021-01-20 17:07:38 -06:00
Jen Herting
69bfdb0843
[py-statsmodels] added version 0.12.1 and updated dependencies accord… (#21175) 
* [py-statsmodels] added version 0.12.1 and updated dependencies accordingly

* [py-statsmodels] added python requirements for new version and fixed formatting for readability
 2021-01-20 17:07:10 -06:00
Sergei Shudler
a95bf8df43
Mirror current E4S hypre test suite test as a smoke test (#20484) 2021-01-20 15:05:25 -08:00
bryanherman
a6ea16ded5
Fix PVM dependencies (#20951) 
* added m4 dep to PVM recipe

* added libtirpc dep to PVM recipe

* decode str or bytestr string to unicode

* Resolved comments from @adamjstewart on setup_build_environment
 2021-01-20 15:52:22 -06:00
Robert Brunner
966f6bc2d2
Propagate SCR resource_manager flag to libyogrt dependency (#21168) 
* When the SCR spec specifies a resource_manager=SLURM or LSF flag, propagate the spec through to
the libyogrt scheduler=slurm or lsf

* Use libyogrt default scheduler option when the SCR spec does not specify LSF or SLURM
 2021-01-20 15:51:46 -06:00
Scott McMillan
0e2fa561f3
Perl: NVIDIA HPC SDK updates (#21177) 
* Perl: NVIDIA HPC SDK updates

* fix indentation

Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2021-01-20 15:51:06 -06:00
Rémi Lacroix
bef250535a
Plumed: Ensure the Python interfaces are also built with Spack's wrappers. (#20625) 2021-01-20 14:12:27 -06:00
Rémi Lacroix
23181d24a2
PETSc: Add a new ptscotch variant. (#20699) 
Currently the Parmetis wrapper is disabled which means nested dissection cannot be used with PTScotch.
 2021-01-20 14:11:23 -06:00
Evan Bollig
2d9e36c4f0
updated relion package for new versions (#21155) 
* updated relion for new versions

* Switched to checksum versions

* Enabled spack tracking for MKL and TBB when CPU optimizations are enabled

* Added variants to control MKL FFT and Ppatent feature

* Replaced tags with sha256 for older versions an and switched to virtual packages
 2021-01-20 13:53:59 -06:00
Andrew-Dunning-NNL
28c0f20214
py-funcy: new recipe (#21136) 
* py-funcy: new recipe

* Update var/spack/repos/builtin/packages/py-funcy/package.py

add build and run python dependencies

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-20 13:53:13 -06:00
Tomoyasu Nojiri
085360ec0b
qwt: Fix qt depend (#21161) 2021-01-20 13:47:03 -06:00
Erik Schnetter
d11ba90198
z3: New version 4.8.9 (#21167) 2021-01-20 13:36:46 -06:00
Baptiste Jonglez
95b974707b
openjdk: Add ppc64le package (#21173) 2021-01-20 13:30:39 -06:00
Omar Padron
43935b4917
fix an issue where some variants were not being concatenated correctly (#21174) 2021-01-20 13:27:41 -06:00
darmac
6f3027b9fb
py-iminuit: update version to fix test error (#21143) 
* py-iminuit: update version to fix test error

* py-iminuit: update py-numpy limitation

* py-iminuit: fix dependency mistake
 2021-01-20 13:22:35 -06:00
Tomoyasu Nojiri
a187b2fb09
py-mikado: Add version 1.2.4 (#20678) 
* py-pysam: Add version 0.15.3

* py-biopython: Add version 1.78

* py-mikado: Add version 1.2.4

* py-mikado: Reflection of review points.

* py-biopython: Add python depend

* py-mikado: Fix depend

* py-mikado: Add py-tabulate depend
 2021-01-20 13:21:59 -06:00
Nathan Hanford
ebc871abbf
[WIP] relocate.py: parallelize test replacement logic (#19690) 
* sbang pushed back to callers;
star moved to util.lang

* updated unit test

* sbang test moved; local tests pass

Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
 2021-01-20 09:17:47 -08:00
Tomoyasu Nojiri
c63f680d2a
r-farver: Fix checksum for 2.0.1 (#20897) 2021-01-19 17:45:51 -08:00
Omar Padron
49141f9528
fix typo in ec-data-vis-sdk package (#21156) 2021-01-19 17:09:42 -06:00
mlawsonca
881ca8406c
fixing outdated metis link (#21003) 
* fixing outdated metis link

* updated url to the official website since the previous url was a GitHub repo that is an unofficial mirror that only contains the latest version
 2021-01-19 16:58:38 -06:00
Andrew-Dunning-NNL
8a92ebd504
py-pyjnius: new recipie (#21150) 2021-01-19 16:57:10 -06:00
Andrew-Dunning-NNL
c6cb0d7869
py-dictdiffer: new recipe (#21151) 
* py-dictdiffer: new recipie

* Update var/spack/repos/builtin/packages/py-dictdiffer/package.py

add correct setuptools dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-19 16:56:53 -06:00
Andrew-Dunning-NNL
6de193fd27
py-pytest-arraydiff: new recipie (#21152) 2021-01-19 16:56:38 -06:00
Andrew-Dunning-NNL
7a913582f2
py-phonenumbers: new recipie (#21153) 2021-01-19 16:56:24 -06:00
Andrew-Dunning-NNL
d3b04f7704
py-pygtrie: new recipie (#21154) 2021-01-19 16:56:09 -06:00
Erik Schnetter
0c5602dc4e
amrex: remove build_type variant (#20938) 
This variant is already provided by CMakePackage.
 2021-01-19 19:17:37 +01:00
William Downs
35a51760a8
esmf: Add versions 8.0.0 and 8.0.1 (#21147) 2021-01-19 10:52:47 -06:00
Harmen Stoppels
034debeba5
Always set cmake args because defaults change across versions (#21146) 2021-01-19 09:57:12 -06:00
ketsubouchi
8a6e7c8687
cpmd: new package (#21138) 2021-01-19 09:02:09 -06:00
Tomoyasu Nojiri
ab83b6689e
sortmerna: Fix for aarch64 (#21126) 2021-01-19 09:01:16 -06:00
yellowhat
89b9d07efa
gromacs: add v2020.5 (#21144) 2021-01-19 10:26:35 +01:00
Robert Brunner
91f65b9772
libyogrt: add lsf scheduler support, create yogrt.conf file (#19960) 
Tell the libyogrt installer to create a yogrt.conf file, specifying whatever 
scheduler was specified in the scheduler=XXX parameter.
 2021-01-19 10:01:48 +01:00
Adam J. Stewart
86e9d93859
libidn2:use http for download (#21001) 
This is needed since libidn is used to bootstrap curl
 2021-01-19 09:54:25 +01:00
Pramod Kumbhar
908528f2f1
NEURON: add v7.8.2, move to CMake and remove all old versions (#20582) 
* Update NEURON simulator package
  - update recipe to support autoconf as well as cmake
  - new versions >=7.8 support cmake
  - remove old variants
  - added patch for latest bug fix release 7.8.2

Co-authored-by: Kumbhar Pramod Shivaji <kumbhar@bbpv1.epfl.ch>
Co-authored-by: Kumbhar Pramod Shivaji <kumbhar@bb-c02vf1h0hv2r.epfl.ch>
 2021-01-19 09:42:50 +01:00
Thomas Madlener
a92bb5400e
lcio, sio: add sio dependency, update versions and expose zlib version for sio (#20839) 2021-01-19 09:20:43 +01:00
Glenn Johnson
82b10583f9
r-grbase: added v1.8-6.7 (#21033) 2021-01-19 09:10:21 +01:00
Tomoki, Karatsu
5033250140
specfem3d-globe: add new package (#20830) 2021-01-19 08:55:18 +01:00
h-denpo
f781fd1878
universal-ctags: added link dependency on libiconv (#21141) 2021-01-19 08:47:26 +01:00
darmac
a567b73108
py-numexpr: added v2.7.2 (#21142) 2021-01-19 08:42:16 +01:00
yellowhat
83eec2d170
NAMD: FIX build +cuda and mpi ~smp (#20778) 
* NAMD: FIX build +cuda

Hi,
If I try to compile NAMD with CUDA support, it fails because cannot file the file "{self.arch}.cuda" because it is undet the "arch" folder.

* NAMD: FIX mpi ~smp

Fix `spack install namd ^charmpp backend=mpi ~smp`
 2021-01-18 23:12:06 -06:00
Rao Garimella
a36c40b61d
Update versions of Wonton and Tangram packages (#20813) 2021-01-18 23:06:26 -06:00
Michael Kuron
2e299c5008
siesta: fix build with gfortran (#20840) 
Avoid Error: Line truncated at (1) [-Werror=line-truncation]
 2021-01-18 22:59:53 -06:00
Erik Schnetter
a2d8023e2a
ssht: New version 1.3.4 (#20880) 
* ssht: New version 1.3.4

ssht changed configuration mechanism from "home-grown" to "cmake. The previously current version 1.2b1 (a beta release) is thus unfortunately not available any more.

* ssht: Don't set build type

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2021-01-18 22:57:53 -06:00
Vicente Bolea
94f1e838b2
ParaView: add new ParaView-5.9.0-RC4 release (#21132) 
* ParaView: add new ParaView-5.9.0-RC4 release

Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>

* ParaView: add official maintainer @vicentebolea

Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
 2021-01-18 22:53:17 -06:00
Toyohisa Kameyama
3143222d87
salmon-tddft: add eigenexa variant (#21140) 2021-01-18 22:52:50 -06:00
Thomas Madlener
d1174bd40f
Make sure sio library is properly propagated (#20940) 2021-01-18 22:52:27 -06:00
darmac
fe32d256d2
ceres-solver: add v2.0.0 (#21005) 2021-01-18 22:51:57 -06:00
Harmen Stoppels
1dab789504
Don't use CUDA for hipblas (#20935) 
* Don't use CUDA for hipblas

* old versions use TRY_CUDA

* Update var/spack/repos/builtin/packages/hipblas/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-18 22:49:59 -06:00
Glenn Johnson
85838e98fb
add version 2.2-2 to r-gwmodel (#21121) 
* add version 2.2-2 to r-gwmodel

* Update var/spack/repos/builtin/packages/r-gwmodel/package.py

Fix comma, space issue.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-01-18 16:59:05 -06:00
Glenn Johnson
c7d3651356
add version 0.3.17 to r-inline (#21053) 
* add version 0.3.17 to r-inline

* Drop R version constraint

A really old version of R was specified in the 0.3.14 and 0.3.15
versions of r-inline. This constraint was dropped in the 0.3.17 version.
Drop it from the spack recipe as well.
 2021-01-18 16:58:08 -06:00
Michael Kuron
cec784bb10
vasp: fix build with gfortran 10 and add version 6.1.1 (#20900) 
* vasp: fix build with gfortran 10

Avoid Error: Type mismatch between actual argument at (1) and actual argument at (2)

* vasp: add version 6.1.1

* vasp 6: allow building without CUDA
 2021-01-18 16:54:52 -06:00
kuramoto-fj
bd51f81e20
Mapsplice2: Add new package (#20901) 2021-01-18 16:53:50 -06:00
Thomas Madlener
e960721c65
Use shared=True to find libraries, since this is the default (#20907) 
package also does not expose a shared variant
 2021-01-18 16:51:44 -06:00
Atsushi Hori
777901843f
New Package: Process-in-Process (PiP) -- 2nd trial (#20925) 
* Adding PiP recipe

* pip@1 recipe (it seems working)

* change install dir hierarchy

* installing PiP man pages

* add pip-glibc & pip-gdb

* fix configure option designations, fix dependency types

* fix dependency type of pip

* use AutotoolsPackage in pip recipe

* add patch for pip-glibc & pip-gdb to enable 'disable-werror'

* change glibc install directory

* add linux distro check to pip-gdb

* create process-in-process package

* use flag_handler and join_path

* add gcc version constraint, change install-test to check-installed

* fix gcc version designations on conflicts()

* add constraint of target cpu, fix flake8 warnings

* add version constraint to resource()

* Some fixes to adapt the current version
	not to execute 'piplnlibs'
	change documentation install command

* Update
	new branch name of PiP-gdb
	adapting PiP-Testsuite

* update pip-gdb github urls

* The very first commit of Process-in-Process (PiP)
	details can be found at https://github.com/RIKEN-SysSoft/PiP

* Fix comment style issues

* New Package: Process-in-Process (PiP) -- 2nd trial

* fix style issue

* change inline comments style (required to have two spaces)

Co-authored-by: Daiki Matsunaga <daikim@axe.bz>
 2021-01-18 16:50:48 -06:00
Tomoyasu Nojiri
b7badf2447
gengetopt: Add texinfo depend (#20929) 2021-01-18 16:40:34 -06:00
bryanherman
c500ea80c3
Add SVN extension to Git (#20939) 
* added package for svn extension to perl

* added svn variant to git recipe
 2021-01-18 16:39:56 -06:00
takanori-ihara
a5963d686c
eigenexa: new package. (#20934) 2021-01-18 23:37:09 +01:00
G-Ragghianti
335c5ed5cb
Updated with requirements for openblas dependency (#20956) 
* Updated with requirements for openblas dependency

* Python style fixes
 2021-01-18 16:34:21 -06:00
Simon Frasch
e91ff86882
spfft: add version 1.0.0 (#20959) 2021-01-18 16:33:18 -06:00
Glenn Johnson
699df81a95
add version 1.2-9 to r-aer (#20965) 2021-01-18 12:57:28 -06:00
Glenn Johnson
5fb647d17c
The latest version of imagemagick needs libtool linking (#20969) 
Imagemagick-7.0.8 needs to link against libltdl. Otherwise, the build will fail with:

```
2 errors found in build log:
     503    checking for libltdl...
     504    checking ltdl.h usability... no
     505    checking ltdl.h presence... no
     506    checking for ltdl.h... no
     507    checking for lt_dlinit in -lltdl... no
     508    checking if libltdl package is complete... no
  >> 509    configure: error: in `/tmp/gpjohnsn/spack-stage/spack-stage-imagemagick-7.0.8-7-4y44gaklhhciiwjzhfpxjfwdj5q
            ltjp3/spack-src':
  >> 510    configure: error: libltdl is required for modules and OpenCL builds
     511    See `config.log' for more details
```
 2021-01-18 12:57:15 -06:00
Glenn Johnson
8f5651e63e
add version 3.3.3 to r-ggplot2 (#21021) 2021-01-18 12:56:36 -06:00
Glenn Johnson
e879c4176d
add version 0.6-2 to r-gmp (#21028) 2021-01-18 12:56:21 -06:00
Glenn Johnson
bd404d8ff8
add version 0.5-1 to r-gridgraphics (#21034) 2021-01-18 12:56:06 -06:00
Glenn Johnson
7f7f9a7bfb
add version 3.8.2 to r-gtools (#21038) 
* add version 3.8.2 to r-gtools

* Improve formatting of description

In case the list gets formatted as a non-list:
- added semicolons to end of list items
- replaced dashes with [#]
 2021-01-18 12:55:51 -06:00
Glenn Johnson
415cff5061
add version 1.30 to r-knitr (#21061) 
* add version 1.30 to r-knitr

* Fix version constraints

- r-digest
- r-formatr

The version constraints on those packages should actually be in the `when`
clause.
 2021-01-18 12:55:33 -06:00
Glenn Johnson
91fcd49484
add version 1.0-6 to r-libcoin (#21075) 2021-01-18 12:55:18 -06:00
Glenn Johnson
978f74eac7
add version 1.2.0 to r-gh (#21112) 2021-01-18 12:55:04 -06:00
Glenn Johnson
2c3550ae18
add version 1.1.2 to r-tidyr (#21113) 2021-01-18 12:54:51 -06:00
Glenn Johnson
b424dbfead
new package: r-rcppdate (#21114) 
'date' is a C++ header library offering extensive date and time
functionality for the C++11, C++14 and C++17 standards written by Howard
Hinnant and released under the MIT license. A slightly modified version
has been accepted (along with 'tz.h') as part of C++20. This package
regroups all header files from the upstream repository by Howard Hinnant
so that other R packages can use them in their C++ code. At present, few
of the types have explicit 'Rcpp' wrapper though these may be added as
needed.
 2021-01-18 12:54:35 -06:00
Glenn Johnson
563d939804
add version 2.0.2 to r-mnormt (#21115) 2021-01-18 12:54:22 -06:00
Glenn Johnson
e132195d6c
add version 3.12.0 to r-mice (#21116) 2021-01-18 12:54:06 -06:00
Glenn Johnson
ca9e103994
new package: r-mutoss (#21117) 
Designed to ease the application and comparison of multiple hypothesis
testing procedures for FWER, gFWER, FDR and FDX. Methods are
standardized and usable by the accompanying 'mutossGUI'.
 2021-01-18 12:53:53 -06:00
Glenn Johnson
5a42df5944
add version 2.0.4.1 to r-leaflet (#21118) 2021-01-18 12:53:38 -06:00
Glenn Johnson
a693a56459
add version 2.1.0 to r-janitor (#21120) 2021-01-18 12:53:23 -06:00
Glenn Johnson
42748f389f
new package: r-parallelly (#21122) 
Utility functions that enhance the 'parallel' package and support the
built-in parallel backends of the 'future' package. For example,
availableCores() gives the number of CPU cores available to your R
process as given by the operating system, 'cgroups' and Linux
containers, R options, and environment variables, including those set by
job schedulers on high-performance compute clusters. If none is set, it
will fall back to parallel::detectCores(). Another example is
makeClusterPSOCK(), which is backward compatible with
parallel::makePSOCKcluster() while doing a better job in setting up
remote cluster workers without the need for configuring the firewall to
do port-forwarding to your local computer.
 2021-01-18 12:53:09 -06:00
Glenn Johnson
b9c5a73a48
add version 2.0.0 to r-dbplyr (#21123) 2021-01-18 12:52:55 -06:00
vvolkl
93740d5600
[genfit] add tags and first version (#21127) 2021-01-18 12:49:58 -06:00
Hadrien G
d996fc080a
[acts] Add version 4.1, bump minimal dependencies (#21128) 2021-01-18 12:49:19 -06:00
Michael Kuron
98788aa4bd
py-mdanalysis: correctly depend on py-gsd (#21133) 2021-01-18 12:45:50 -06:00
Sergey Kosukhin
723f132531
python: improve building with Intel (#21134) 2021-01-18 12:44:22 -06:00
dithwick
fa53838d2f
ibm-java: new version (#21135) 2021-01-18 12:43:18 -06:00
darmac
3b064b3a96
py-pycairo: update version and fix setup.py test error (#21004) 
* py-pycairo: update version and fix setup.py test error

* py-pycairo: update dependency
 2021-01-18 12:34:41 -06:00
Tomoyasu Nojiri
385ca1529a
hssp: Fix checksum for 3.0.10 (#20894) 
* hssp: Fix checksum for 3.0.10

* hssp: Fix checksum for 3.0.1 to 3.0.9
 2021-01-18 12:21:49 -06:00
Toyohisa Kameyama
3ee8c11910
mpas-model: New package. (#21124) 
* mpas-model: New package.

* remove pnetcdf variant.
remove debug print.

* remove unnessesary line.

* style fix.
 2021-01-18 12:10:21 -06:00
bryanherman
2cfe349828
added new python package py-f90wrap (#20957) 2021-01-17 22:38:16 -06:00
darmac
5b75dde872
Libconfuse: refine autoreconf and add some dependencies (#21006) 
* libconfuse: add some build dependencies

* libconfuse: use autogen.sh to do the autoreconf
 2021-01-17 22:30:42 -06:00
Robert Underwood
16ee9dc110
sz: version 2.1.11.1 (#21008) 2021-01-17 22:28:51 -06:00
Glenn Johnson
aeb6c63ea6
add version 0.4.2 to r-labeling (#21063) 2021-01-17 14:09:08 -06:00
Glenn Johnson
733c6767f5
add version 1.2.4 to r-lambda-r (#21064) 2021-01-17 14:08:54 -06:00
Glenn Johnson
840e072bbe
add version 16.1.4 to r-laplacesdemon (#21065) 2021-01-17 14:08:39 -06:00
Glenn Johnson
6793f3fd55
add version 1.1.0.1 to r-later (#21066) 2021-01-17 14:08:24 -06:00
Glenn Johnson
9feb2572fb
add version 0.20-41 to r-lattice (#21067) 2021-01-17 14:08:08 -06:00
Glenn Johnson
36a547aff4
add version 0.6-29 to r-latticeextra (#21068) 2021-01-17 14:07:54 -06:00
Glenn Johnson
41ca013069
add version 1.6.8.1 to r-lava (#21069) 2021-01-17 14:07:40 -06:00
Glenn Johnson
a54e4322e5
add version 1.0-4 to r-ldheatmap (#21070) 2021-01-17 14:07:27 -06:00
Glenn Johnson
e316cde706
new package: r-leaflet-providers (#21071) 
Contains third-party map tile provider information from 'Leaflet.js',
<https://github.com/leaflet-extras/leaflet-providers>, to be used with
the 'leaflet' R package. Additionally, 'leaflet.providers' enables users
to retrieve up-to-date provider information between package updates.
 2021-01-17 14:07:15 -06:00
Glenn Johnson
716a094c08
add version 3.1 to r-leaps (#21072) 2021-01-17 14:07:00 -06:00
Glenn Johnson
a1d894e30a
add version 0.3.6 to r-leiden (#21073) 2021-01-17 14:06:46 -06:00
Glenn Johnson
e98d5bd143
add version 4.0.5 to r-bit64 (#20964) 2021-01-17 14:05:05 -06:00
Glenn Johnson
76878dbbee
add version 0.8-81 to r-foreign (#20975) 
* add version 0.8-81 to r-foreign

* fix line length too long error
 2021-01-17 14:01:48 -06:00
Glenn Johnson
1a8c0eedb9
add version 3.3.2 to r-geomorph (#21010) 2021-01-17 14:00:43 -06:00
Glenn Johnson
5acf07b4c8
add version 3.11.0 to r-ergm (#21011) 2021-01-17 13:59:46 -06:00
Glenn Johnson
f714dfc226
add version 1.3-0 to r-lsei (#21083) 2021-01-17 13:58:08 -06:00
Glenn Johnson
1d1d4a5796
new package: r-cpp11 (#21015) 
Provides a header only, C++11 interface to R's C interface. Compared to
other approaches 'cpp11' strives to be safe against long jumps from the
C API as well as C++ exceptions, conform to normal R function semantics
and supports interaction with 'ALTREP' vectors.
 2021-01-17 13:57:53 -06:00
Glenn Johnson
8a2ee437a2
add version 1.0.3 to r-dplyr (#21012) 2021-01-17 13:57:12 -06:00
Glenn Johnson
afb17db324
add version 2.2.0 to r-remotes (#21016) 2021-01-17 13:55:46 -06:00
Glenn Johnson
ef128e50e1
add version 1.2.0 to r-pkgbuild (#21017) 2021-01-17 13:55:04 -06:00
Glenn Johnson
2a342b7541
add version 1.1.0 to r-pkgload (#21018) 2021-01-17 13:54:15 -06:00
Glenn Johnson
0d0d52050b
add version 2.0.2 to r-rversions (#21019) 2021-01-17 13:53:31 -06:00
Glenn Johnson
0efce74027
add version 7.1.1 to r-roxygen2 (#21020) 2021-01-17 13:52:31 -06:00
Glenn Johnson
54bab50b47
new package: r-gitcreds (#21022) 
Query, set, delete credentials from the 'git' credential store. Manage
'GitHub' tokens and other 'git' credentials. This package is to be used
by other packages that need to authenticate to 'GitHub' and/or other
'git' repositories.
 2021-01-17 13:49:36 -06:00
Glenn Johnson
9295019928
add version 0.9.0 to r-gistr (#21023) 2021-01-17 13:48:55 -06:00
Glenn Johnson
ce14d627a6
add version 0.28.0 to r-git2r (#21024) 2021-01-17 13:48:07 -06:00
Glenn Johnson
c8e52aaa9c
add version 4.1 to r-glmnet (#21025) 2021-01-17 13:47:11 -06:00
Glenn Johnson
c204b94927
add version 0.14.0 to r-globals (#21026) 2021-01-17 13:46:31 -06:00
Glenn Johnson
56fd340231
add version 1.4.2 to r-glue (#21027) 2021-01-17 13:45:54 -06:00
Glenn Johnson
cf4feccefc
add version 0.6.9 to r-googlevis (#21029) 2021-01-17 13:44:30 -06:00
Glenn Johnson
8c7e4b9d22
add version 0.2.2 to r-gower (#21030) 2021-01-17 13:43:53 -06:00
Glenn Johnson
84674ec696
add version 3.1.1 to r-gplots (#21031) 2021-01-17 13:43:16 -06:00
Glenn Johnson
eb250ec23d
add version 0.7.1 to r-graphlayouts (#21032) 2021-01-17 13:42:31 -06:00
Glenn Johnson
6a7611c4c2
add version 2.1.2 to r-gsodr (#21035) 2021-01-17 13:39:56 -06:00
Glenn Johnson
d9b1a8bf45
add version 2.2-2 to r-gss (#21036) 2021-01-17 13:39:06 -06:00
Glenn Johnson
251f16358b
add version 2.0-6 to r-gstat (#21037) 2021-01-17 13:38:28 -06:00
Glenn Johnson
879a662278
add version 1.4-5 to r-sp (#21039) 2021-01-17 13:36:13 -06:00
Glenn Johnson
c2cc650943
add version 2.3.1 to r-haven (#21040) 2021-01-17 13:35:35 -06:00
Glenn Johnson
055be03518
add version 1.3.3 to r-hdf5r (#21041) 2021-01-17 13:34:38 -06:00
Glenn Johnson
9df65902e7
add version 1.28.2 to r-hexbin (#21042) 2021-01-17 13:33:35 -06:00
Glenn Johnson
fb1776ceca
add version 3.1-43 to r-hh (#21043) 2021-01-17 13:32:56 -06:00
Glenn Johnson
974c0dcc62
add version 4.4-2 to r-hmisc (#21044) 2021-01-17 13:32:02 -06:00
Glenn Johnson
26933550f7
add version 1.0.0 to r-hms (#21045) 2021-01-17 13:30:50 -06:00
Glenn Johnson
e4f9c5d213
add version 2.1.0 to r-htmltable (#21046) 2021-01-17 13:30:01 -06:00
Glenn Johnson
44c58ad727
add version 0.5.1 to r-htmltools (#21047) 2021-01-17 13:29:14 -06:00
Glenn Johnson
f0ae5cf235
add version 1.5.3 to r-htmlwidgets (#21048) 2021-01-17 13:28:26 -06:00
Glenn Johnson
6864bfc6f0
add version 0.3.0 to r-httpcode (#21049) 2021-01-17 13:27:40 -06:00
Glenn Johnson
311068354a
add version 1.5.5 to r-httpuv (#21050) 2021-01-17 13:27:02 -06:00
Glenn Johnson
8e514a04d0
add version 1.2.6 to r-igraph (#21051) 2021-01-17 13:26:03 -06:00
Glenn Johnson
63662be724
add version 0.42.3 to r-imager (#21052) 2021-01-17 13:24:48 -06:00
Glenn Johnson
0a64b616ca
add version 0.15.2 to r-intervals (#21054) 2021-01-17 13:22:43 -06:00
Glenn Johnson
061fa01dcb
add version 0.4.0 to r-isdparser (#21055) 2021-01-17 13:22:03 -06:00
Glenn Johnson
665f297067
add version 0.0-18.1 to r-iso (#21056) 2021-01-17 13:21:15 -06:00
Glenn Johnson
1b997bde77
add version 1.0.13 to r-iterators (#21057) 2021-01-17 13:20:36 -06:00
Glenn Johnson
a118404fbf
add version 2.7-2 to r-jomo (#21058) 2021-01-17 11:55:45 -06:00
Glenn Johnson
9b90640f9a
add version 0.9-29 to r-kernlab (#21059) 2021-01-17 11:54:57 -06:00
Glenn Johnson
d84b401d38
add version 2.23-18 to r-kernsmooth (#21060) 2021-01-17 11:54:17 -06:00
Glenn Johnson
a64eaacc0d
add version 1.11.7 to r-ks (#21062) 2021-01-17 11:49:58 -06:00
Glenn Johnson
d4dadcfa10
add version 1.1.1 to r-lhs (#21074) 2021-01-17 11:39:42 -06:00
Glenn Johnson
1af0aeee7b
add version 0.8.0 to r-listenv (#21076) 2021-01-17 11:38:14 -06:00
Glenn Johnson
7e3120a9c5
add version 1.1-26 to r-lme4 (#21077) 2021-01-17 11:37:32 -06:00
Glenn Johnson
16166223e8
add version 0.9-38 to r-lmtest (#21078) 2021-01-17 11:35:59 -06:00
Glenn Johnson
6f27d20a58
add version 1.5-9.4 to r-locfit (#21079) 2021-01-17 11:35:23 -06:00
Glenn Johnson
92a665e07d
add version 0.3.2 to r-log4r (#21080) 2021-01-17 11:34:42 -06:00
Glenn Johnson
e19464979f
add version 2.4.1 to r-loo (#21081) 2021-01-17 11:33:55 -06:00
Glenn Johnson
6606eb6a96
add version 5.6.15 to r-lpsolve (#21082) 2021-01-17 11:32:33 -06:00
Glenn Johnson
efd1536e36
add version 1.7.9.2 to r-lubridate (#21084) 2021-01-17 11:30:50 -06:00
Glenn Johnson
b0bf2c4c99
add version 2.0.1 to r-magrittr (#21085) 2021-01-17 11:30:04 -06:00
Glenn Johnson
68845f6b23
add version 0.10.1 to r-manipulatewidget (#21086) 2021-01-17 11:29:22 -06:00
Glenn Johnson
9dee70eea5
add version 1.2.7 to r-mapproj (#21087) 2021-01-17 11:28:30 -06:00
Glenn Johnson
a9574b0180
add version 1.0-2 to r-maptools (#21088) 2021-01-17 11:27:44 -06:00
Glenn Johnson
c3a1900fe9
add version 7.3-53 to r-mass (#21089) 2021-01-17 11:26:52 -06:00
Glenn Johnson
1b281948e4
add version 1.3-2 to r-matrix (#21090) 2021-01-17 11:26:14 -06:00
Glenn Johnson
8abe261359
add version 0.57.0 to r-matrixstats (#21091) 2021-01-17 11:25:09 -06:00
Glenn Johnson
b8296aedf3
add version 5.4.7 to r-mclust (#21092) 2021-01-17 11:24:20 -06:00
Glenn Johnson
7a109269f5
add version 2.30 to r-mcmcglmm (#21093) 2021-01-17 11:23:41 -06:00
Glenn Johnson
27f3bcecee
add version 1.15.6 to r-mco (#21094) 2021-01-17 11:22:54 -06:00
Glenn Johnson
158c6da440
add version 0.5-2 to r-mda (#21095) 2021-01-17 11:22:15 -06:00
Glenn Johnson
505dc3c0cf
new package: r-mathjaxr (#21096) 
Provides 'MathJax' and macros to enable its use within Rd files for
rendering equations in the HTML help files.
 2021-01-17 11:21:33 -06:00
Glenn Johnson
ef9a0ed08d
add version 1.8-33 to r-mgcv (#21097) 2021-01-17 11:20:38 -06:00
Glenn Johnson
679f6b3dfc
add version 0.9 to r-mime (#21098) 2021-01-17 11:19:52 -06:00
Glenn Johnson
ed87d83bce
add version 0.9-0 to r-misc3d (#21099) 2021-01-17 11:19:11 -06:00
Glenn Johnson
53984edf2e
add version 1.2.0 to r-mixtools (#21100) 2021-01-17 11:18:22 -06:00
Glenn Johnson
6f3c53e12e
add version 2.18.0 to r-mlr (#21101) 2021-01-17 11:17:29 -06:00
Glenn Johnson
010daebf50
add version 1.1.5 to r-mlrmbo (#21102) 2021-01-17 11:15:45 -06:00
Glenn Johnson
2d8b8c395e
add version 0.1.3 to r-mmwrweek (#21103) 2021-01-17 11:14:30 -06:00
Glenn Johnson
8ebf242e8f
new package: r-tmvnsim (#21104) 
Importance sampling from the truncated multivariate normal using the GHK
(Geweke-Hajivassiliou-Keane) simulator. Unlike Gibbs sampling which can
get stuck in one truncation sub-region depending on initial values, this
package allows truncation based on disjoint regions that are created by
truncation of absolute values. The GHK algorithm uses simple Cholesky
transformation followed by recursive simulation of univariate truncated
normals hence there are also no convergence issues. Importance sample is
returned along with sampling weights, based on which, one can calculate
integrals over truncated regions for multivariate normals.
 2021-01-17 11:13:47 -06:00
Glenn Johnson
ee0221d973
add version 0.1.8 to r-modelr (#21105) 2021-01-17 11:12:57 -06:00
Glenn Johnson
eefdadfe7e
add version 0.2-23 to r-modeltools (#21106) 2021-01-17 11:11:18 -06:00
Glenn Johnson
40700930ea
add version 1.4-15 to r-multcomp (#21107) 2021-01-17 11:10:34 -06:00
Glenn Johnson
3213dbf27f
add version 0.1-10 to r-multicool (#21108) 2021-01-17 11:09:22 -06:00
Glenn Johnson
b756df13d7
add version 1.0-15 to r-multitaper (#21109) 2021-01-17 11:08:38 -06:00
Glenn Johnson
50a361f75e
add version 1.1-1 to r-mvtnorm (#21110) 2021-01-17 11:07:54 -06:00
Glenn Johnson
15afce3f8b
add version 0.2.9 to r-rcppcctz (#21111) 2021-01-17 11:06:59 -06:00
Adam J. Stewart
fc7e48daf0
util-linux-uuid: don't install to system directories (#21000) 2021-01-16 22:01:05 +01:00
Glenn Johnson
255df2455c
r-cubature: added v2.0.4.1 (#20871) 2021-01-16 17:44:47 +01:00
Glenn Johnson
3193817b27
r-data-table: add v1.13.6 (#20872) 2021-01-16 17:31:07 +01:00
Glenn Johnson
74144d44d8
R geor (#20990) 2021-01-16 15:27:59 +01:00
Glenn Johnson
9c4c558e2a
add version 2.0.3.2 to r-gdalutils (#20985) 2021-01-16 15:27:47 +01:00
Glenn Johnson
a539cfc857
add version 2.1.8 to r-gbm (#20983) 2021-01-16 15:27:37 +01:00
Glenn Johnson
ebce4325e8
add version 5.1-7 to r-gamlss-dist (#20982) 2021-01-16 15:27:26 +01:00
Glenn Johnson
72218aeebb
add version 5.2-0 to r-gamlss (#20981) 2021-01-16 15:27:12 +01:00
Glenn Johnson
e56d4826b7
add version 1.5.0 to r-fs (#20980) 2021-01-16 15:27:02 +01:00
Glenn Johnson
85d6620ce0
add version 1.5-1 to r-fracdiff (#20979) 2021-01-16 15:26:47 +01:00
Glenn Johnson
bf91917f99
add version 2.2-9 to r-fpc (#20978) 2021-01-16 15:26:38 +01:00
Glenn Johnson
5e9aac9c1f
add version 1.2-4 to r-formula (#20977) 2021-01-16 15:26:27 +01:00
Glenn Johnson
7f2742ecd4
add version 8.13 to r-forecast (#20974) 2021-01-16 15:25:54 +01:00
Glenn Johnson
35232bc38c
add version 1.5.1 to r-foreach (#20973) 2021-01-16 15:25:44 +01:00
Glenn Johnson
38199ce9cf
add version 0.5.0 to r-forcats (#20972) 2021-01-16 15:25:30 +01:00
Glenn Johnson
e65551a158
add version 1.7.2 to r-jsonlite (#20971) 2021-01-16 15:25:17 +01:00
Glenn Johnson
89009c10af
new package: r-proc (#20970) 2021-01-16 15:25:07 +01:00
Glenn Johnson
2eed811a1f
add version 1.1.0 to r-tidyselect (#20968) 2021-01-16 15:24:07 +01:00
Glenn Johnson
fae1c812e4
add version 1.7-16 to r-ade4 (#20967) 2021-01-16 15:23:47 +01:00
Glenn Johnson
c0ad6ab46c
add version 2.1.3 to r-adegenet (#20966) 2021-01-16 15:23:35 +01:00
Glenn Johnson
700d7f3f6c
add version 0.21 to r-bookdown (#20963) 2021-01-16 15:22:31 +01:00
Glenn Johnson
6f7b939e07
add version 0.1.3.1 to r-c50 (#20962) 2021-01-16 15:22:17 +01:00
Glenn Johnson
db37d0ab12
add version 3.5.1 to r-callr (#20961) 2021-01-16 15:22:05 +01:00
Glenn Johnson
d291612c59
add version 0.9.2 to r-cdcfluview (#20960) 2021-01-16 15:21:53 +01:00
Glenn Johnson
d2e0a2448f
add version 1.0.4 to r-construct (#20954) 2021-01-16 15:21:18 +01:00
Glenn Johnson
ad034af7dc
add version 0.4.12 to r-circlize (#20958) 2021-01-16 15:20:26 +01:00
Glenn Johnson
184fb792f5
fix list_url for r packages (#20955) 2021-01-16 15:20:09 +01:00
Glenn Johnson
9bb4503be1
add version 1.1.1 to r-cowplot (#20953) 2021-01-16 15:18:55 +01:00
Glenn Johnson
98bebba0d8
add version 1.14.0 to r-dendextend (#20952) 2021-01-16 15:18:34 +01:00
Glenn Johnson
c00c145f4e
add version 1.0.6.1 to r-diagrammer (#20950) 2021-01-16 15:18:21 +01:00
Glenn Johnson
6683921988
add version 1.8.2 to r-dorng (#20949) 2021-01-16 15:18:05 +01:00
Glenn Johnson
4d8eb48a40
add version 5.3.0 to r-earth (#20948) 2021-01-16 15:17:47 +01:00
Glenn Johnson
6a9d0b53a6
add version 0.4 to r-europepmc (#20947) 2021-01-16 15:17:26 +01:00
Glenn Johnson
8108501aca
add version 0.5.1 to r-exactextractr (#20946) 2021-01-16 15:17:08 +01:00
Glenn Johnson
0dbdfa20ae
add version 1.0.7 to r-factoextra (#20945) 2021-01-16 15:16:49 +01:00
Glenn Johnson
7c5ea8d3b4
add version 2.4 to r-factominer (#20943) 2021-01-16 15:16:35 +01:00
Glenn Johnson
47a4727ac5
add version 4.0.4 to r-ff (#20942) 2021-01-16 15:15:30 +01:00
Glenn Johnson
d9ef32ceff
add version 4.4.1 to r-statnet-common (#20941) 2021-01-16 15:15:13 +01:00
Glenn Johnson
41cc3404a4
add version 0.9-7 to r-sf (#20851) 2021-01-16 15:13:54 +01:00
Alberto Chiusole
bf660bff04
Update IOR to 3.3.0 + set as preferred (#20986) 2021-01-16 15:13:15 +01:00
Glenn Johnson
d3f78eacdf
add version 0.1.0 to r-generics (#20987) 2021-01-16 15:12:21 +01:00
Glenn Johnson
ba024fdb7d
add version 1.0.5 to r-getoptlong (#20988) 2021-01-16 15:12:08 +01:00
Glenn Johnson
fa33c534f7
add version 0.1-8.1 to r-jpeg (#20989) 2021-01-16 15:11:53 +01:00
Glenn Johnson
5abf70d48d
add version 0.1.22 to r-ggdendro (#20991) 2021-01-16 15:11:28 +01:00
Glenn Johnson
74418d1aed
add version 0.3.2 to r-ggforce (#20992) 2021-01-16 15:11:13 +01:00
Glenn Johnson
d409004f70
new package: r-isoband (#20993) 2021-01-16 15:10:57 +01:00
Glenn Johnson
6acfca4635
add version 0.0.5 to r-ggplotify (#20994) 2021-01-16 15:10:37 +01:00
Glenn Johnson
9bb72ea946
add version 0.9.0 to r-ggrepel (#20995) 2021-01-16 15:10:21 +01:00
Glenn Johnson
e87b1b7aa4
add version 0.5.3 to r-ggridges (#20996) 2021-01-16 15:10:08 +01:00
Glenn Johnson
a98e48525d
add version 0.4.7 to r-ggvis (#20997) 2021-01-16 15:09:46 +01:00
Cyrus Harrison
710fe02a9a
update dray package with new versions and to fix issue with test variant (#19583) 
* update dray package with new versions and to fix issue with test variant

* fix comment typo

* flake8 remove trailing white space on last line
 2021-01-15 17:14:06 -06:00
QuellynSnead
330c48b244
zoltan: source code location change (#20787) 2021-01-15 10:59:38 +01:00
Glenn Johnson
ad0c0e81fd
r-pixmap: added new package (#20795) 2021-01-15 10:51:35 +01:00
Glenn Johnson
59cf4c9039
add version 0.8-18 to r-amap (#20803) 2021-01-15 10:50:33 +01:00
Glenn Johnson
9756167049
add version 5.4-1 to r-ape (#20804) 2021-01-15 10:50:08 +01:00
Glenn Johnson
ee7ce1f44f
add version 2.0.3 to r-argparse (#20805) 2021-01-15 10:49:40 +01:00
Glenn Johnson
1798ae9b39
add version 1.2.1 to r-backports (#20806) 2021-01-15 10:47:38 +01:00
Glenn Johnson
8599480ed9
add version 3.1-4 to r-bayesm (#20807) 2021-01-15 10:47:14 +01:00
Glenn Johnson
13d0618f03
add version 0.4.2.3 to r-bibtex (#20815) 2021-01-15 10:46:49 +01:00
Glenn Johnson
8f7b50b01f
add version 2.4-1 to r-bio3d (#20816) 2021-01-15 10:46:17 +01:00
Glenn Johnson
3d3761f8f0
add version 4.0.4 to r-bit (#20818) 2021-01-15 10:45:52 +01:00
Glenn Johnson
0024c8df08
add version 1.2.1 to r-blob (#20819) 2021-01-15 10:45:26 +01:00
Glenn Johnson
d2c3fb5e45
add version 2.6 to r-rmarkdown (#20838) 2021-01-15 10:44:54 +01:00
Glenn Johnson
46c71d070f
add version 0.2.3 to r-cubist (#20841) 2021-01-15 10:44:27 +01:00
Glenn Johnson
df29b9f55e
add version 1.5-12.2 to r-cairo (#20842) 2021-01-15 10:43:21 +01:00
Glenn Johnson
699a1e7c86
add version 3.4.5 to r-processx (#20843) 2021-01-15 10:42:57 +01:00
Glenn Johnson
bbc733b84c
add version 3.0-10 to r-car (#20844) 2021-01-15 10:42:28 +01:00
Glenn Johnson
84f5f8437f
r-lifecycle: new package at v0.2.0 (#20845) 2021-01-15 10:42:06 +01:00
Glenn Johnson
0d27aa685d
add version 1.0.1 to r-caracas (#20846) 2021-01-15 10:41:26 +01:00
Glenn Johnson
0fe9fa6a75
add version 3.0-4 to r-cardata (#20847) 2021-01-15 10:40:46 +01:00
Glenn Johnson
c270629d23
add version 1.2.2.2 to r-modelmetrics (#20849) 2021-01-15 10:40:28 +01:00
Glenn Johnson
319a3c93f8
add version 1.18.1 to r-catools (#20850) 2021-01-15 10:39:37 +01:00
Glenn Johnson
ec307c83a6
add version 2.0.0 to r-checkmate (#20852) 2021-01-15 10:38:27 +01:00
Glenn Johnson
3ad021eef5
add version 0.4.10 to r-checkpoint (#20853) 2021-01-15 10:38:04 +01:00
Glenn Johnson
33325609be
add version 2.3-56 to r-chron (#20854) 2021-01-15 10:37:35 +01:00
Glenn Johnson
aea0740cdc
add version 0.1.2 to r-globaloptions (#20855) 2021-01-15 10:35:18 +01:00
Glenn Johnson
5cfb19fb34
add version 0.4-3 to r-classint (#20857) 2021-01-15 10:34:55 +01:00
Glenn Johnson
89b745ed3f
add version 2.2.0 to r-cli (#20858) 2021-01-15 10:34:33 +01:00
Glenn Johnson
d2f99bb42b
add version 0.7.1 to r-clipr (#20859) 2021-01-15 10:34:09 +01:00
Glenn Johnson
5eec0e418c
add version 0.3-58 to r-clue (#20860) 2021-01-15 10:33:48 +01:00
Glenn Johnson
532ca134f3
add version 1.3.7 to r-clustergeneration (#20861) 2021-01-15 10:30:48 +01:00
Glenn Johnson
c654ce7557
add version 0.19-4 to r-coda (#20862) 2021-01-15 10:20:44 +01:00
Glenn Johnson
d2f7e6d020
add version 1.3-1 to r-coin (#20863) 2021-01-15 10:16:32 +01:00
Glenn Johnson
e0f75b6fc3
add version 2.0-0 to r-colorspace (#20864) 2021-01-15 10:15:55 +01:00
mic84
7762b8acdd
amrex: add ROCm support (#20809) 2021-01-15 01:14:55 -08:00
Glenn Johnson
3b9144a4a4
add version 0.3.6 to r-vctrs (#20878) 2021-01-15 10:07:58 +01:00
Glenn Johnson
c8e4ded260
add version 0.4.10 to r-rlang (#20796) 2021-01-15 10:07:26 +01:00
Glenn Johnson
bf6b8cfe6e
add version 2.0-1 to r-compositions (#20865) 2021-01-15 10:06:45 +01:00
Glenn Johnson
1b78ca678a
add version 5.0.2 to r-rcppparallel (#20866) 2021-01-15 10:06:23 +01:00
Glenn Johnson
1973a01c9c
add version 1.0-1 to r-copula (#20867) 2021-01-15 10:06:04 +01:00
Glenn Johnson
faa1f84d57
add version 1.1.0.1 to r-crosstalk (#20869) 2021-01-15 10:05:37 +01:00
Glenn Johnson
a7316a24ca
add version 1.0.0 to r-crul (#20870) 2021-01-15 10:05:17 +01:00
Glenn Johnson
e596e6ba3a
add version 0.2-3 to r-deldir (#20873) 2021-01-15 10:02:47 +01:00
Glenn Johnson
878d071974
add version 2.2-5 to r-deoptim (#20874) 2021-01-15 10:02:16 +01:00
Glenn Johnson
5a29444ac4
add version 1.28 to r-desolve (#20875) 2021-01-15 10:01:56 +01:00
Glenn Johnson
0c617d81cb
add version 1.4.2 to r-httr (#20876) 2021-01-15 10:01:34 +01:00
Glenn Johnson
b7d992dd03
add version 1.5.8 to r-dicekriging (#20877) 2021-01-15 10:01:03 +01:00
Glenn Johnson
1e9eae7c1c
add version 1.5 to r-rngtools (#20887) 2021-01-15 09:59:52 +01:00
Glenn Johnson
9a2155f7b1
add version 0.6.27 to r-digest (#20882) 2021-01-15 09:55:55 +01:00
Glenn Johnson
53c9b0232b
add version 1.3-3 to r-dismo (#20883) 2021-01-15 09:55:28 +01:00
Glenn Johnson
d1c815ddb9
add version 0.9-15 to r-diversitree (#20884) 2021-01-15 09:55:06 +01:00
Glenn Johnson
7b80796882
add version 1.3.7 to r-domc (#20885) 2021-01-15 09:54:49 +01:00
Glenn Johnson
8697cf826d
add version 1.0.16 to r-doparallel (#20886) 2021-01-15 09:54:26 +01:00
Glenn Johnson
e1fd840ccc
r-dosnow: add v1.0.19 (#20888) 2021-01-15 09:53:29 +01:00
Glenn Johnson
52d2d24a4a
r-dt: add v0.17 (#20889) 2021-01-15 09:52:28 +01:00
Glenn Johnson
1df3d65127
r-dtw: add v1.22-3 (#20890) 2021-01-15 09:51:58 +01:00
a-saitoh-fj
de085efd7d
libzmq: add platform conditions to libbsd dependency (#20893) 2021-01-15 09:50:49 +01:00
darmac
1998630ca2
libvips: added v8.10.5 (#20902) 2021-01-15 09:48:56 +01:00
Adam J. Stewart
92b6d3ac67
py-anuga: add new package (#20782) 2021-01-15 09:47:18 +01:00
Abhinav Bhatele
2c44e62813
hatchet: updated urls (#20908) 2021-01-15 09:23:54 +01:00
Thomas Green
58d5b73ba4
Improve gcc detection in llvm. (#20189) 
Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk>
 2021-01-15 09:22:58 +01:00
Glenn Johnson
56904d5834
r-plotmo: add v3.6.0 (#20909) 2021-01-15 09:16:59 +01:00
Glenn Johnson
1dc48dc92a
r-ecp: add v3.1.3 (#20910) 2021-01-15 09:16:35 +01:00
Adam J. Stewart
ac2b9a3e24
py-fiscalyear: add v0.3.0 (#20911) 2021-01-15 09:16:08 +01:00
Glenn Johnson
3233debf1b
r-ellipse: add v0.4.2 (#20912) 2021-01-15 09:15:33 +01:00
Glenn Johnson
a438828ec9
r-energy: add v1.7-7 (#20914) 2021-01-15 09:14:56 +01:00