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Author SHA1 Message Date
Harmen Stoppels
3d1d5f755f oci: when base image uses Image Manifest Version 2, follow suit (#42777) 2024-02-22 16:33:56 +01:00
Thomas-Ulrich
90778873d1 tandem: update package (#42785) 2024-02-22 15:45:20 +01:00
AMD Toolchain Support
1af57e13fb elpa: fix support for patched version (#42803) 
Co-authored-by: Ning Li <ning.li@amd.com>
 2024-02-22 15:43:12 +01:00
AMD Toolchain Support
28d25affcc ELPA: Linking fixes for BLAS and OpenMP (#42747) 
Co-authored-by: Phil Tooley <phil.tooley@amd.com>
 2024-02-22 15:21:00 +01:00
Martin Lang
3ebaf33915 libgd: fix INT_MAX not defined (#42104) 
Compiling version 2.2.4 fails (on a Debian system with only a minimum set of packages installed) with an error because `INT_MAX` is undeclared:
```
   263    gd_gd2.c: In function '_gd2GetHeader':
>> 264    gd_gd2.c:212:54: error: 'INT_MAX' undeclared (first use in this function)
   265      212 |                 if (*ncx <= 0 || *ncy <= 0 || *ncx > INT_MAX / *ncy) {
   266          |                                                      ^~~~~~~
   267    gd_gd2.c:87:1: note: 'INT_MAX' is defined in header '<limits.h>'; did you forget to '#include <limits.h>'?
```
 2024-02-22 03:23:59 -07:00
Alec Scott
e8d981b405 rust: add v1.76.0 (#42798) 2024-02-22 03:09:31 -07:00
Steven Hahn
02f222f6a3 google benchmark: Add variant with libpfm4 (#42620) 
Signed-off-by: Steven Hahn <hahnse@ornl.gov>
 2024-02-22 07:29:49 +01:00
James Beal
8345c6fb85 delly2: add v1.2.6 (#42745) 
Co-authored-by: James Beal <jb23@sanger.ac.uk>
 2024-02-22 07:28:40 +01:00
Xavier Delaruelle
3f23634c46 environment-modules: add version 5.4.0 (#42763) 2024-02-22 07:10:55 +01:00
MatthewLieber
d5766431a0 mvapich: add v3.0 (#42756) 
Co-authored-by: Matt Lieber <lieber.31@osu.edu>
 2024-02-22 07:09:14 +01:00
Martin Lang
1388bfe47d bigdft-atlab: add v1.9.3, v1.9.4 (#42643) 2024-02-22 07:05:00 +01:00
dependabot[bot]
579dec3b35 build(deps): bump urllib3 from 2.2.0 to 2.2.1 in /lib/spack/docs (#42757) 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.2.0 to 2.2.1.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.2.0...2.2.1)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-02-22 07:01:45 +01:00
Martin Lang
9608ed9dbd cgal: add v5.5.3 (#42650) 2024-02-22 06:58:03 +01:00
Wouter Deconinck
42b739d6d5 podio: depends_on py-graphviz type run (for podio-vis) (#42787) 
The podio-vis tool depends at run-time on py-graphviz, https://github.com/AIDASoft/podio/blob/master/tools/podio-vis#L10.
 2024-02-22 06:14:38 +01:00
Matthieu Dorier
91a0c71ed1 nlohmann-json-schema-validator: added version 2.2.0 and 2.3.0 (#42792) 2024-02-22 06:11:29 +01:00
Dom Heinzeller
6ee6fbe56b ecflow: apply ctsapi_cassert.patch for all compilers (#42793) 2024-02-22 06:09:54 +01:00
Mikael Simberg
be4eae3fa8 pika: add sanitizers variant (#42778) 2024-02-22 05:54:33 +01:00
Harmen Stoppels
ad70b88d5f spack gc: do not show uninstalled but needed specs (#42696) 2024-02-22 05:21:39 +01:00
eugeneswalker
c1d230f25f e4s ci stacks: add python packages (#42774) 
* e4s ci stacks: add python packages

* comment out failing specs
 2024-02-21 20:59:05 -07:00
John W. Parent
4bc52fc1a3 env activate: use Win-compatible print on Windows (#42755) 
Use "echo" instead of "printf" on Windows.
 2024-02-21 11:02:04 -08:00
John W. Parent
7d728822f0 Windows: fix error with can_symlink check (#42753) 2024-02-21 10:18:25 -08:00
John W. Parent
e96640d2b9 cgns package: don't use MPI wrappers on Windows (#42750) 2024-02-21 10:10:48 -08:00
Alex Richert
e196978c7c Add 'docs' variant to rust-bootstrap (#42768) 
* Add 'docs' variant to rust-bootstrap

* remove docs for rust-bootstrap
 2024-02-21 11:04:13 -07:00
Harmen Stoppels
de3d1e6c66 rocm: removal of deprecated <5.1 versions (#42676) 
The package `aomp` is removed entirely, as it was too outdated to have non-deprecated dependencies.
 2024-02-21 14:07:40 +01:00
Massimiliano Culpo
2d8e0825fe binutils: add v2.42 (#42760) 2024-02-20 23:03:51 -08:00
pauleonix
d5c06c4e2c asio: add patches 1.28.2 and 1.28.1 (#42762) 2024-02-20 23:02:43 -08:00
Wouter Deconinck
0d92b07dbd pythia6: deal with dead pythiasix.hepforge.org (#42162) 
* pythia6: deal with dead pythiasix.hepforge.org

* pythia6: rm main81.f from CMakeLists.txt

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
 2024-02-20 15:30:54 -06:00
Auriane R
6cfcbc0167 Update conflict between stdexec and clang (#42765) 2024-02-20 13:32:54 -07:00
Massimiliano Culpo
f9e9fab2da clingo: add v5.7.1 (#42758) 2024-02-20 07:49:49 -08:00
Massimiliano Culpo
b3f790c259 btop: add v1.3.2 (#42759) 2024-02-20 07:46:35 -08:00
George Young
b5b5130bed pblat: add new package (#42517) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2024-02-19 22:28:27 +01:00
Vicente Bolea
d670a2a5ce adios2: update kokkos dependency (#42621) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2024-02-19 11:54:08 -07:00
Harmen Stoppels
0ee3a3c401 Use relative target in symlinks to modified files in view (#42699) 2024-02-19 16:33:38 +01:00
Dave Keeshan
ad6dc0d103 verible: add v0.0-3539-g9442853c (#42628) 2024-02-19 14:40:23 +01:00
Alex Richert
6e373b46f8 scorep: specify binutils headers and libs (#42656) 2024-02-19 14:35:22 +01:00
Thomas-Ulrich
abe617c4ea hipsycl: update package (#42518) 2024-02-19 14:34:05 +01:00
Satish Balay
a0e80b23b9 DTK: specify MPI compilers (#42592) 
Co-authored-by: balay <balay@users.noreply.github.com>
 2024-02-19 14:24:28 +01:00
Dom Heinzeller
4d051eb6ff ecflow: fix compilation with Intel classic compilers (#42622) 2024-02-19 14:23:09 +01:00
kinagaki-fj
0d89083cb5 omm-bundle: add new package (#42304) 2024-02-19 14:16:39 +01:00
Alex Richert
23e586fd85 ferret: add support for gcc@10: (#42660) 2024-02-19 14:14:11 +01:00
Richard Berger
c2b116175b kokkos: disable CUDA_MALLOC_ASYNC on cray-mpich (#42661) 
Co-authored-by: Daniel Arndt <arndtd@ornl.gov>
 2024-02-19 13:52:48 +01:00
Mikael Simberg
a1f90620c3 umpire: depend on camp~rocm when umpire itself has ~rocm (#42701) 2024-02-19 11:58:31 +01:00
Harmen Stoppels
668879141f remove a few redundant calls to setup_run_environment (#42718) 
Any package `X` used as `depends_on("x", type="build")` will have
`X.setup_run_environment(env)` called, because it has to be able to
"run" in the build environment.

So there is no point in calling `setup_run_environment` from
`setup_dependent_build_environment`.

Also it's redundant to call `setup_run_environment` in
`setup_dependent_run_environment`, cause (a) the latter is called _for
every parent edge_ instead of once per node, and (b) it's only called
after `setup_run_environment` is called anyways. Better to call
`setup_run_environment` once and only once.
 2024-02-19 11:43:45 +01:00
Adam J. Stewart
267defd9d3 py-matplotlib: add v3.8.3 (#42698) 2024-02-19 11:40:18 +01:00
Ken Raffenetti
603d3f2283 mpich: Remove invalid pmi option (#42686) 
pmi=off is not a valid configuration option. MPICH cannot function
without a PMI library. Fixes #42685.
 2024-02-19 11:38:49 +01:00
James Beal
02bfbbe269 Bump for new version of bedtools2 (#42034) 
Co-authored-by: James Beal <jb23@sanger.ac.uk>
 2024-02-19 11:35:26 +01:00
Alec Scott
44d08d2c24 gnupg: make discoverable as external (#42736) 2024-02-19 11:27:39 +01:00
AMD Toolchain Support
c6faab10aa CP2K: fix multiple use of spec["fftw"] (#42724) 
fftw object was originally created with spec["fftw:openmp"], but
referencing spec["fftw"] overwrites the 'last_query' in the spec object,
so later use of fftw.libs was not returing FFTW OpenMP libs.

Also allow the post-install fixup to support amdfftw as well as fftw.

Co-authored-by: Branden Moore <branden.moore@amd.com>
Co-authored-by: Phil Tooley <phil.tooley@amd.com>
Co-authored-by: Greg Becker <becker33@llnl.gov>
 2024-02-19 11:21:11 +01:00
Geoffrey Lentner
baa203f115 duckdb: add v0.9.2 (#42374) 2024-02-19 03:02:43 -07:00
Alec Scott
575a33846f bfs: add v3.1.1 (#42740) 2024-02-19 10:54:00 +01:00