zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
25,703 Commits 246 Branches 186 Tags
3e51304b68724a89c5048a293d926a55925b8aef
Commit Graph

19976 Commits

Author SHA1 Message Date
Simon Pintarelli
3e51304b68 spfft: pass cuda_arch to cmake (#30295) 2022-04-26 14:59:48 +02:00
snehring
62abbeaf6f express: specify patch version range (#30283) 2022-04-26 11:27:32 +02:00
H. Joe Lee
80e24f3f69 googletest: change "master" to "main" (#30285) 
There's no master branch on GitHub for googletest.
 2022-04-26 11:27:08 +02:00
dlkuehn
24f5069584 snpeff: change jdk dependency to java (#30048) 
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
 2022-04-26 11:25:03 +02:00
Kevin Huck
5da78991d4 apex: add v2.5.1 (#30287) 2022-04-26 11:19:07 +02:00
Asher Mancinelli
cfb5d5f988 hiop: add v0.6.1, add new variant "cusolver" (#30288) 2022-04-26 11:12:14 +02:00
Michael Kuhn
a10d262f5f glib: add 2.72.1 and 2.70.5 (#30274) 2022-04-26 11:10:34 +02:00
Harmen Stoppels
16e926d374 gawk: drop gettext by default (#30290) 
Reduces the number of packages to bootstrap gcc (which actually has
--disable-nls).
 2022-04-26 11:02:03 +02:00
Rohit Goswami
3ade5516a2 MAINT: Add a debug variant to PyTorch (#30267) 
* MAINT: Add a debug flag

* MAINT: Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-04-25 15:33:37 -05:00
eugeneswalker
b41de6d86b exago +cuda, +rocm: pass amdgpu_target, cuda_arch to dependencies, as appropriate (#30259) 
* exago +rocm: pass amdgpu_target to raja, hiop dependencies

* +cuda builds: pass cuda_arch to dependencies

* hiop: pass cuda_arch to dependencies
 2022-04-25 19:48:35 +00:00
Erik Schnetter
96113a5dc6 gcc: Make gcc 11.3 build on Darwin (#30278) 
Don't apply a Darwin-specific patch that doesn't work on 11.3 any more.

Closes https://github.com/spack/spack/issues/30264.
 2022-04-25 20:15:31 +02:00
Seth R. Johnson
db0335fa54 OpenMPI: improve PMix handling (#29449) 
* openmpi: always require pmix for 4:

`~pmix` is not applicable to version 4+, since it always builds a vendored
copy of pmix (currently 3.2.3).

* pmix: relax version requirements

When the version range was specified, newer versions didn't exist.
Also use normalized spack versions rather than artificial .9.9 /.0.0.

* openmpi: restrict pmix versions

pmix option isn't available for OpenMPI@1, and according to
https://github.com/open-mpi/ompi/issues/7988 , OpenMPI 4.0.1 will not
build with pmix@3.1.5.

* pmix: add newer versions

* OpenMPI: re-express conflicts/configure logic as conditional variants

This relies partly on `self.enable_or_disable` and its ilk to emit an
empty list when the variant isn't applicable.
 2022-04-25 11:54:20 -06:00
Hervé Yviquel
c1ed51e767 mpich: add variant to enable per VCI critical sections (#27840) 2022-04-25 17:31:13 +02:00
Theofilos Manitaras
2a8a0aa156 Add libfabric version 1.14.1 (#30275) 2022-04-25 08:51:12 -06:00
eugeneswalker
5073613c6e slepc +rocm: pass amdgpu_target to dep (#30252) 2022-04-25 08:50:49 -06:00
Vicente Bolea
4a76ca1f5e vtk-m: add v1.8.0-rc1 (#30233) 2022-04-25 16:49:38 +02:00
Mark W. Krentel
878e6b6712 hpctoolkit: add version 2022.04.15, update recipe (#30258) 
1. update for rocm 4.5 and drop support for earlier rocm.
2. no longer use mbedtls or gotcha, they are only for old revs.
3. update version requirements for dyninst and libmonitor
4. begin to deprecate old versions
 2022-04-25 16:40:00 +02:00
Erik Schnetter
aeba9daea6 mpiwrapper: add new package (#30107) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-04-25 15:01:39 +02:00
Matthew Archer
25d115ba1a ufcx: add new package (#29861) 2022-04-25 14:50:45 +02:00
Adam J. Stewart
f37e07a882 GDAL: don't add system paths to env vars (#30229) 2022-04-25 14:48:46 +02:00
Seth R. Johnson
4c0cc5a295 testu01: new package (#30266) 2022-04-25 14:46:52 +02:00
Qian Jianhua
57968e7ad4 fakexrandr: mkdir for install (#29845) 2022-04-25 14:42:15 +02:00
Qian Jianhua
02a7fc69ed pgplot: fix syntax error in recipe (#30270) 2022-04-25 14:32:04 +02:00
Mark W. Krentel
35a4c2325e hpcviewer: add version 2022.03 (#30255) 2022-04-25 09:40:43 +02:00
Diego Alvarez
6253445b13 Added nextflow 22.04.0 (#30265) 2022-04-23 14:17:41 -07:00
H. Joe Lee
dea5fe87f7 Hermes: new package (#29863) 2022-04-23 06:38:14 -06:00
QuellynSnead
6162ea95b0 trilinos: limit secas patch range for cce (#30205) 
The cray_secas.patch no longer appears to be necessary
with cce 13.x. Limit its application to cce 12.14.1 - 12.99.99.
 2022-04-23 07:01:13 -04:00
Erik Schnetter
44b409d696 memkind: Don't use -Werror when building (#30071) 2022-04-23 09:16:47 +02:00
eugeneswalker
58ee164777 hiop +rocm: add amdgpu_target for deps (#30184) 
* hiop +rocm: add amdgpu_target for deps

* Update var/spack/repos/builtin/packages/hiop/package.py

Perfect! Thanks!

Co-authored-by: Asher Mancinelli <ashermancinelli@gmail.com>

* don't use f-string, not compatible with py 2

Co-authored-by: Asher Mancinelli <ashermancinelli@gmail.com>
 2022-04-22 16:26:38 -07:00
Bernd Riederer
78d87c71f6 Uncrustify package: add versions up to 0.74 (#27621) 2022-04-22 21:43:44 +00:00
eugeneswalker
9633145374 exago: depend on petsc@3.16:3.16 when @1.3.0: (#30238) 
* exago: depend on petsc@3.16.0:3.16.99 when @1.3.0:

* Update var/spack/repos/builtin/packages/exago/package.py

Co-authored-by: Cameron Rutherford <cameron.rutherford@me.com>

* constrain petsc to @3.16.0:3.16

Co-authored-by: Cameron Rutherford <cameron.rutherford@me.com>
 2022-04-22 14:13:22 -07:00
Harmen Stoppels
29d96633ee openssl: enable nvhpc build by disabling asm (#30248) 2022-04-22 14:34:41 -06:00
Peter Scheibel
267da78559 Package-level submodule attribute: support explicit versions (#30085) 2022-04-22 11:02:17 -07:00
Andrea Valenzuela
013a0a04a4 Add checksum for jupyter-console@6.4.3 (#30156) 
* Add checksum for jupyter-console@6.4.3

* Update py-jupyter-console dependency

* Extend jupyter-client@7.0.0 dependency to newer versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-04-22 16:42:49 +00:00
Ken Raffenetti
a6a7c3ce88 mpich: Add CUDA variant (#29901) 
CUDA device memory is supported with the ch4 device.

Update provides to include MPI-4.0 functionality
 2022-04-22 17:02:27 +02:00
haralmha
960b48b613 py-pystan: Add new package (#29772) 
* py-pystan: Add new package

* Fix dependencies

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add run dependency to py-setuptools

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add py-httpstan@4.7.2 and py-pysimdjson@3.2.0

* Dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-04-22 09:56:07 -05:00
Michael Kuhn
84bb8e316d fix pkgconfig dependencies (#30246) 
`pkgconfig` is the correct virtual dependency, `pkg-config` and
`pkgconf` are providers of it.
 2022-04-22 07:34:30 -06:00
Harmen Stoppels
010068c50a netcdf-fortran: add v4.5.4 (#30242) 2022-04-22 14:30:58 +02:00
Harmen Stoppels
a7ebdd2d10 osu-micro-benchmarks: set NVCCFLAGS (#30221) 2022-04-22 13:59:26 +02:00
Tom Scogland
62553e7521 openssl: exclude more dangerous environment variables (#30208) 
* pkg/openssl: blacklist more dangerous environment variables

* fix style
 2022-04-22 04:51:18 -07:00
Ethan Stam
b00983439f py-cinemasci: new version 1.7.0 (#30193) 
* py-cinemasci: new version 1.7.0

* remove preferred version

* add py-pyyaml dependency
 2022-04-21 21:34:26 -06:00
Thomas Madlener
5fe4ac2b05 lcio: install more missing files for python bindings (#29739) 2022-04-21 20:30:28 -06:00
Alex Hedges
c60ded8ccc findutils: new version 4.9.0 (#30170) 2022-04-22 00:15:20 +02:00
Michael Kuhn
ce7c8b44d5 gcc: add 11.3.0 (#30226) 2022-04-21 23:22:52 +02:00
eugeneswalker
4817e4c80c exago: use hipcc for +rocm builds (#30232) 2022-04-21 14:22:41 -06:00
eugeneswalker
111aeeb0ae exago: depends on pkgconfig (#30231) 2022-04-21 13:21:16 -07:00
Erik Schnetter
3a70df9f64 fftw: Link explicitly against -lmpi (#29279) 
* fftw: Link explicitly against `-lmpi`

Closes https://github.com/spack/spack/issues/29224.

* Generalize MPI flags

Co-authored-by: Dom Heinzeller <dom.heinzeller@icloud.com>

* Add platform guard

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Dom Heinzeller <dom.heinzeller@icloud.com>
 2022-04-21 13:14:21 -06:00
Scott McMillan
616a8eebcd perl: fix issues when compiling 5.34 with nvhpc compilers (#30110) 
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2022-04-21 11:10:46 -06:00
Harmen Stoppels
ac9bd3d72d openssh: no pie for %nvhpc (#30189) 2022-04-21 11:21:35 +02:00
Tim Haines
7118602251 boost: add v1.79.0 (#30137) 2022-04-21 01:09:23 -05:00