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Author SHA1 Message Date
Adam J. Stewart
5e6dc7ab4b Add latest version of zstd (#13340) 
* Add latest version of zstd

* setup_environment -> setup_build_environment
 2019-10-21 21:45:48 -05:00
Toyohisa Kameyama
98c0d59a0c sniffles: fix zlib header lookup directory. (#13063) 
* sniffles: fix zlib header lookup directory.

* use bamtools and zlib to spack installed package.

* remove unneeded patch.
 2019-10-21 18:38:05 -05:00
noguchi-k
7b62b64b03 elsi:add CMAKE Fortran MODDIR FLAG for Fujitsu compiler (#13244) 
* add CMAKE Fortran MODDIR FLAG for Fujitsu compiler

* elsi:remove extra fix
 2019-10-21 18:28:38 -05:00
t-karatsu
0e3e1836ff arpack-ng: Fixed error that is not compatible with isnan. (#13246) 2019-10-21 18:27:39 -05:00
t-karatsu
26141ad489 bpp-core: Clarify 'isnan' function's namespace. (#13260) 2019-10-21 18:24:10 -05:00
Michael Kuhn
edf56d8ac4 qt: Fix build for newer versions (#13262) 
For some reason, newer versions of qt fail to build because they cannot
find certain system libraries such as libatomic and libdl.

Leaving the qmake compiler set to gcc seems to fix the problem.

Fixes #13221
 2019-10-21 18:23:03 -05:00
健美猞猁
26687988eb New package: Fl (#12877) 2019-10-21 12:04:00 -07:00
Massimiliano Culpo
3d77ecd92e Bootstrap environment modules optimizing for generic architectures (#13105) 
fixes #13073

Since #3206 was merged bootstrapping environment-modules was using the architecture of the current host or the best match supported by the default compiler. The former case is an issue since shell integration was looking for a spec targeted at the host microarchitecture.

1. Bootstrap an env modules targeted at generic architectures
2. Look for generic targets in shell integration scripts
3. Add a new entry in Travis to test shell integration
 2019-10-21 11:20:05 -07:00
Massimiliano Culpo
498f448ef3 microarchitectures: fix custom compiler versions (#13222) 
Custom string versions for compilers were raising a ValueError on
conversion to int. This commit fixes the behavior by trying to detect
the underlying compiler version when in presence of a custom string
version.

* Refactor code that deals with custom versions for better readability
* Partition version components with a regex
* Fix semantic of custom compiler versions with a suffix
* clang@x.y-apple has been special-cased
* Add unit tests
 2019-10-21 10:24:57 -07:00
Adam J. Stewart
4ab63c17d5 Fix Python 3.8 build on macOS (#13338) 2019-10-21 11:21:47 -05:00
Adam J. Stewart
4d99663ef9 Add latest version of py-cffi (#13322) 
* Add latest version of py-cffi

* setup_environment -> setup_build_environment
 2019-10-21 11:19:48 -05:00
Adam J. Stewart
038f7b1b66 Add latest version of py-numpy (#13307) 
* Add latest version of py-numpy

* setup_environment -> setup_build_environment
 2019-10-21 11:19:05 -05:00
Adam J. Stewart
72177b6e97 Add latest version of py-tables (#13291) 
* Add latest version of py-tables

* setup_environment -> setup_build_environment
 2019-10-21 11:17:52 -05:00
Adam J. Stewart
5090071693 Add latest version of py-torch (#13290) 
* Add latest version of py-torch

* setup_environment -> setup_build_environment
 2019-10-21 11:17:15 -05:00
Adam J. Stewart
f2d91f7e3c Use specific version of googletest for uriparser (#13339) 2019-10-20 19:08:23 -05:00
Adam J. Stewart
01e64886ac Tut cannot be built with Python 3.7+ (#13341) 2019-10-20 19:08:04 -05:00
Adam J. Stewart
7f2aacfffc Add latest version of proj (#13337) 2019-10-20 17:56:37 -05:00
Adam J. Stewart
030b2f8657 Add missing zlib dependency to openjpeg (#13336) 2019-10-20 17:06:43 -05:00
Adam J. Stewart
0cfc88c7d7 openblas: http -> https (#13335) 2019-10-20 17:06:30 -05:00
Adam J. Stewart
785d5d9ca3 mapserver: http -> https (#13334) 2019-10-20 16:31:55 -05:00
Adam J. Stewart
4789ac956c liblas: http -> https (#13331) 2019-10-20 15:51:35 -05:00
Adam J. Stewart
529d1246f6 libtiff: http -> https (#13332) 2019-10-20 15:51:23 -05:00
Adam J. Stewart
b56e46ece8 libgeotiff: http -> https (#13330) 2019-10-20 15:51:08 -05:00
Adam J. Stewart
f1e595cb61 Add latest version of libyaml (#13333) 2019-10-20 15:50:48 -05:00
Adam J. Stewart
04e999162d Add latest version of libgcrypt (#13329) 2019-10-20 14:45:00 -05:00
Adam J. Stewart
73c5a9c736 Add latest version of googletest (#13328) 2019-10-20 14:44:43 -05:00
Adam J. Stewart
1673dc5aeb GEOS: http -> https (#13327) 2019-10-20 14:44:28 -05:00
Adam J. Stewart
c767444f88 Add missing test dependency to py-alabaster (#13325) 2019-10-20 14:44:14 -05:00
Adam J. Stewart
a602ed873d Add latest version of py-typing (#13287) 2019-10-20 13:18:02 -05:00
Adam J. Stewart
d462749b59 Add missing dependencies to py-apipkg (#13324) 2019-10-20 13:17:44 -05:00
Adam J. Stewart
32879df9d0 Add latest version of py-babel (#13323) 2019-10-20 13:17:28 -05:00
Adam J. Stewart
ea90d2b88a Add latest version of py-chardet (#13321) 2019-10-20 11:44:12 -05:00
Adam J. Stewart
d2744a072b Add latest version of py-click (#13320) 2019-10-20 11:43:56 -05:00
Adam J. Stewart
41126d457f Add latest version of py-execnet (#13317) 2019-10-20 11:21:59 -05:00
Adam J. Stewart
1007a0f7e5 Add latest version of py-decorator (#13318) 2019-10-20 11:21:46 -05:00
Adam J. Stewart
47831a95e1 Add latest version of py-coverage (#13319) 2019-10-20 11:21:32 -05:00
Adam J. Stewart
b421c97110 Add latest version of py-sphinxcontrib-websupport (#13292) 2019-10-20 11:21:03 -05:00
Adam J. Stewart
21d14a19f6 Add latest version of py-sphinx (#13293) 2019-10-20 11:20:46 -05:00
Adam J. Stewart
2268dd9e8f Add latest version of py-snowballstemmer (#13294) 2019-10-20 11:20:21 -05:00
Adam J. Stewart
a2e7f0e9d2 Add latest version of py-requests (#13296) 2019-10-20 11:19:51 -05:00
Adam J. Stewart
35362adb97 Add latest version of py-pyyaml (#13297) 2019-10-20 11:19:29 -05:00
Adam J. Stewart
b76f1687fb Add latest version of py-pytest-xdist (#13298) 2019-10-20 11:19:11 -05:00
Adam J. Stewart
f832f12ca6 Add latest version of py-pytest-runner (#13299) 2019-10-20 11:18:55 -05:00
Adam J. Stewart
3a2eeedf20 Add latest version of py-pytest-mock (#13300) 2019-10-20 11:18:39 -05:00
Adam J. Stewart
4d7226e561 Add latest version of py-pytest-httpbin (#13301) 2019-10-20 11:18:04 -05:00
Adam J. Stewart
63dd97f84e Add latest version of py-pytest-cov (#13302) 2019-10-20 11:17:47 -05:00
Adam J. Stewart
03b1af0d96 Add latest version of py-pysocks (#13303) 2019-10-20 11:17:27 -05:00
Adam J. Stewart
10065b325d Add latest version of py-pycparser (#13304) 2019-10-20 11:17:11 -05:00
Adam J. Stewart
d4f409ea51 Add latest version of py-psutil (#13305) 2019-10-20 11:16:53 -05:00
Adam J. Stewart
04af812e03 Add latest version of py-pip (#13306) 2019-10-20 11:16:36 -05:00