zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
8,894 Commits 246 Branches 186 Tags
4277b42ddc6512d0fe04da45dc75e4eacf61a365
Commit Graph

8894 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Adam J. Stewart
534e1cbf1b Some tests don't pass with Intel compilers 2016-08-11 10:20:08 -05:00
Adam J. Stewart
ee5e20dae3 Add dependencies to libarchive and cmake 2016-08-11 10:17:42 -05:00
Adam J. Stewart
58d7704060 Overhaul of compression libraries 2016-08-11 10:15:13 -05:00
Mayeul d'Avezac
7769367747 dag_hash stabilised by depending on sorted dict 
Spec.to_node_dict uses OrderedDict

This is to try and ensure that the dag_hash is stable across python
version and processes.
 2016-08-11 16:03:50 +01:00
Adam J. Stewart
87d0a7c315 Always clean up tmp files, even if killed 2016-08-11 09:56:41 -05:00
Adam J. Stewart
09c9786fab Allow run-flake8 to be run from anywhere 2016-08-11 09:53:04 -05:00
Adam J. Stewart
1edfc82123 Run flake8 checks on changed uncommitted files 2016-08-11 09:53:04 -05:00
Todd Gamblin
e6a122417a Merge pull request #1491 from eschnett/eschnett/curl 
Update curl to 7.50.1
 2016-08-11 03:04:07 -07:00
alalazo
f5433477b9 qa : flake8 issues 2016-08-11 09:08:00 +02:00
alalazo
b4b9ebe7d7 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	lib/spack/llnl/util/tty/log.py
	lib/spack/spack/__init__.py
	lib/spack/spack/cmd/install.py
	lib/spack/spack/cmd/setup.py
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/blitz/package.py
	var/spack/repos/builtin/packages/gmp/package.py
	var/spack/repos/builtin/packages/qhull/package.py
	var/spack/repos/builtin/packages/szip/package.py
 2016-08-11 08:55:20 +02:00
becker33
f59653ac2c Merge pull request #1496 from LLNL/features/pep8-compliance 
PEP8 compliance
 2016-08-10 17:36:31 -07:00
Todd Gamblin
84e331c586 Remove unneeded noqa comments. 2016-08-10 16:33:39 -07:00
Todd Gamblin
db59f87e32 Update README.md for PEP8 2016-08-10 16:33:39 -07:00
Todd Gamblin
240f1fd223 Spack packages now PEP8 compliant. 2016-08-10 16:33:39 -07:00
Todd Gamblin
867121ca68 Move jsonschema files out of config.py to their own package. 2016-08-10 16:33:38 -07:00
Todd Gamblin
bf1072c902 Make Spack core PEP8 compliant. 2016-08-10 16:33:37 -07:00
Todd Gamblin
8061deb883 Merge pull request #1495 from LLNL/bugfix/module-init-deprecation-gh1494 
Fix superclass constructor args.
 2016-08-10 16:12:23 -07:00
Todd Gamblin
e7f4fd404d Fix superclass constructor for SpackNamespace objects. 2016-08-10 15:54:13 -07:00
Joseph Ciurej
aa860bf4df Fixed a bug that was making packages with non-bool default variants to crash. 2016-08-10 11:54:33 -07:00
Erik Schnetter
158deae625 Update curl to 7.50.1 2016-08-10 13:51:57 -04:00
becker33
cfde03e694 Merge pull request #1485 from hartzell/patch-6 
Fix typo 'flexbile' -> 'flexible'
 2016-08-09 15:34:51 -07:00
George Hartzell
4bca1c5440 Fix typo 'flexbile' -> 'flexible' 2016-08-09 15:13:08 -07:00
Todd Gamblin
d380d16427 Merge pull request #1482 from mpbelhorn/olcf/do_not_use_ssl_to_fetch_upstream_openssl 
Openssl package should not require openssl (https) to obtain source.
 2016-08-09 13:22:31 -07:00
Matt Belhorn
2be065418b Openssl package should not require openssl (https) to obtain source. 2016-08-09 15:57:07 -04:00
Todd Gamblin
a095fd517f Merge pull request #1015 from LLNL/features/faster-virtuals 
Faster virtuals and concretization
 2016-08-09 10:33:40 -07:00
becker33
fb9f6fe9b5 Merge pull request #1473 from epfl-scitas/packages/plumed_dependents 
plumed : added dependents (gromacs, cp2k)
 2016-08-09 09:14:33 -07:00
Todd Gamblin
9d4a36a62f Properly re-raise exceptions from lock context handler. 2016-08-09 02:25:09 -07:00
Todd Gamblin
0c75c13cc0 Flake8 fixes 2016-08-09 02:25:07 -07:00
alalazo
38dcd6bce9 qa : flake8 issues 2016-08-09 09:54:24 +02:00
Todd Gamblin
102ac7bcf1 Move provider cache to home directory and refactor Transactions 
Major stuff:

- Created a FileCache for managing user cache files in Spack.  Currently just
  handles virtuals.

- Moved virtual cache from the repository to the home directory so that users do
  not need write access to Spack repositories to use them.

- Refactored `Transaction` class in `database.py` -- moved it to
  `LockTransaction` in `lock.py` and made it reusable by other classes.

Other additions:

- Added tests for file cache and transactions.

- Added a few more tests for database

- Fixed bug in DB where writes could happen even if exceptions were raised
  during a transaction.

- `spack uninstall` now attempts to repair the database when it discovers that a
  prefix doesn't exist but a DB record does.
 2016-08-09 00:24:54 -07:00
alalazo
5362864cc9 plumed : fixed name clash on attribute 2016-08-09 09:24:36 +02:00
Massimiliano Culpo
15d9fb1879 plumed : adding dependents 
* cp2k : added plumed
* gromacs : patched pme load balancing
* gromacs : added plumed
 2016-08-09 09:23:53 +02:00
Todd Gamblin
2042e9a6d8 Fix bugs with sparse spec printing. 
- Make namespace, arch, and dependnecies show up in spec yaml
  only if they're set.

- Lost some of this functionality with deptypes
 2016-08-08 21:04:23 -07:00
Todd Gamblin
1339714eec Restore text output in verbose mode. 2016-08-08 21:04:23 -07:00
Todd Gamblin
5d690c9270 Make compiler command test last until caching is fixed. 
- global compiler cache breaks tests that come after this one.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
e5743db9b9 Fix issues with import order in tests. 
- modules weren't set properly as attributes in parent modules
 2016-08-08 21:04:23 -07:00
Todd Gamblin
d195576fba WIP 2016-08-08 21:04:23 -07:00
Todd Gamblin
5e5024342f Fix iterator invalidation issues. 2016-08-08 21:04:23 -07:00
Todd Gamblin
4de45c2684 fix scoping issue. 2016-08-08 21:04:23 -07:00
Todd Gamblin
ce6ac93abe rename virtual module to provider_index 2016-08-08 21:04:23 -07:00
Todd Gamblin
1f5a21decf Fix namespace support in Repo.get_pkg_class() 2016-08-08 21:04:23 -07:00
Todd Gamblin
ab049eca41 Faster key in FlagMap._cmp_key 2016-08-08 21:04:23 -07:00
Todd Gamblin
37fc258313 Remove vestigial methods from Package. 2016-08-08 21:04:23 -07:00
Todd Gamblin
faa0a0e4c3 Add a ProviderIndex cache. 
- Spack will check if the index needs updating, and will only parse
  all package files if it does.

- Spack tries to parse as few package files as necessary.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
cf2f902b82 Make ProviderIndexes mergeable, so we can cache them per-repo. 2016-08-08 21:04:23 -07:00
Todd Gamblin
bf028990e7 Make ProviderIndex yaml-izable. 
- allow a provider index to be stored and re-read.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
025609c63f More compact YAML formatting for abstract specs. 
- Don't add empty/absent fields to Spec YAML when they're not there.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
7aaad89ba9 Lazily evaluate all_package_names in repository.py 
- Don't need to list all packages unless we have to.

- Only use the list of all packages for existence checks if we have
  generated it for some other purpose.
 2016-08-08 21:04:23 -07:00
becker33
2b94d7cf8e Merge pull request #1472 from adamjstewart/fixes/rstrip 
Only strip newline chars, not spaces
 2016-08-08 13:28:56 -07:00
Adam J. Stewart
5d48c108a3 Only strip newline chars, not spaces 2016-08-08 15:02:05 -05:00