Commit Graph

39549 Commits

Author SHA1 Message Date
Auriane R
4d7cd4c0bf Add py-flash-attn@2.4.2 (#43960) 2024-05-03 16:40:46 -07:00
Christopher Christofi
4adbfa3835 fix package permissions docs link for gaussian packages (#43998) 2024-05-03 17:35:39 -06:00
Adam J. Stewart
8a1b69c1d3 Modernize py-torch-geometric and dependencies (#43984)
* Modernize py-torch-geometric and dependencies
* Forgot one maintainer
2024-05-03 16:21:41 -07:00
Matthew Thompson
a1d69f8661 hdf package: fix building with apple-clang@15: (#43964) 2024-05-03 16:11:55 -07:00
Carlos Bederián
e05dbc529e globalarrays package: add missing dependencies for armci=ofi/openib (#43971) 2024-05-03 16:08:29 -07:00
jdomke
99d33bf1f2 hpl: linking against fujitsu ssl2 if available (#43978)
* linking against fujitsu ssl2 if available

---------

Co-authored-by: domke <673751-domke@users.noreply.gitlab.com>
2024-05-03 16:08:12 -07:00
jdomke
bd1918cd71 adding clang compiler checks which behaves exactly like aocc (#43976)
Co-authored-by: domke <673751-domke@users.noreply.gitlab.com>
2024-05-03 16:01:14 -07:00
snehring
2a967c7df4 graphicsmagick package: add version 1.3.43 (#43977) 2024-05-03 15:59:10 -07:00
downloadico
7596aac958 New package: py-pylith (#43987) 2024-05-03 15:56:21 -07:00
Frédéric Simonis
c73ded8ed6 preCICE: increase baseline versions for next ver (#43985) 2024-05-03 15:55:46 -07:00
Satish Balay
df1d783035 sowing: add @master (#43991) 2024-05-03 15:37:39 -07:00
Massimiliano Culpo
47051c3690 Add a default provider for armci (#43997) 2024-05-03 23:48:58 +02:00
Owen Solberg
3fd83c637d Add checksum for R v4.4.0 (#43973)
Co-authored-by: Owen Solberg <owen.solberg@sana.com>
2024-05-03 14:47:53 -07:00
Jon Rood
ef5afb66da openfast: updates to package (#43994) 2024-05-03 15:22:12 -06:00
snehring
ecc4336bf9 r-asreml: adding new package (#43970)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-03 12:20:58 -07:00
Harmen Stoppels
d2ed217796 concretizer args: --fresh-roots == --reuse-deps (#43988)
Since reuse is the default now, `--reuse-deps` can be confusing, as it
technically does not imply roots are fresh.

So add `--fresh-roots`, which is also easier to discover when running
`spack concretize --fre<tab>`
2024-05-03 12:12:36 -07:00
Dom Heinzeller
272c7c069a Add -fPIC to hdf-eos2 builds (#43794)
* Add -fPIC to hdf-eos2 builds
* Use self.compiler.cc_pic_flag instead of -fPIC
* Fix style in var/spack/repos/builtin/packages/hdf-eos2/package.py
2024-05-03 11:38:33 -07:00
Jeff Hammond
23f16041cd NWChem ARMCI-MPI variant and optional TCE builds (#43883)
* WIP NWChem with ARMCI-MPI and TCE optional
* rename armci-mpi to armcimpi
* add version for git
* add ARMCI-MPI support to NWChem package
   EXTERNAL_ARMCI_PATH needs to be set to the ARMCI-MPI package install prefix.
   I could not get it from spec["armcimpi"] but it worked to use the dependent build environment method to export a    generic environmental variable to use instead.
* i suppose i can maintain NWChem as well
* check rejects option that dozens of packages use
   i do not have time to fight with this nonsense
   Run . share/spack/setup-env.sh
   ==> Error: armcimpi version 'master' has extra arguments: 'branch'
   Valid arguments for a url fetcher are:
       'url', 'sha256', 'md5', 'sha1', 'sha224', 'sha384', 'sha512', and 'checksum'
   Error: Process completed with exit code 1.
* style
* ARMCI-MPI needs depends_on; the rest seems fixed
* fix ARMCI selection per review feedback from @zzzoom
   https://github.com/spack/spack/pull/43883#discussion_r1585014147
* address reviewer feedback from @yizeyi18
   https://github.com/spack/spack/pull/43883#discussion_r1587228084
   elaborate on what +extratce does, in terms of the NWChem build environment variables,
   some of which are documented on https://nwchemgit.github.io/TCE.html.
* style
* Update var/spack/repos/builtin/packages/nwchem/package.py

---------

Signed-off-by: Jeff Hammond <jeff.science@gmail.com>
Co-authored-by: Carlos Bederián <4043375+zzzoom@users.noreply.github.com>
2024-05-03 11:13:54 -07:00
Frank Willmore
e2329adac0 Update package.py for vacuumms 1.2.0 (#43948)
* updating vacuumms for new release
* formatting
* re-order versions and remove triple quote
2024-05-03 11:06:15 -07:00
jalcaraz
4ec788ca12 [TAU package] Update with +rocprofv2. Updated some tests. (#43937)
* [TAU package] Update with +rocprofv2. Updated some tests.

pdated with +rocprofv2 flag. Only works with rocm-core >= 6.0.0

Can be tested with (Omnia):
spack install tau@master +rocm+rocprofv2 %gcc@11
Needs the last commit in our local repository, can be done by modifying the "git = " line, or waiting until the public one is updated.


In the case that tests cause issues when building TAU, there is the flag:
disable_tests = False

The rocm test is disabled by default, as the PR regarding tests loading dependencies is not solved (PR#43682).

* [@spackbot] updating style on behalf of jordialcaraz

---------

Co-authored-by: jordialcaraz <jordialcaraz@users.noreply.github.com>
2024-05-03 08:33:13 -07:00
Andrew W Elble
c1cea9d304 py-tensorflow: fix aarch64 build (#43852)
* py-tensorflow: fix aarch64 build

* [@spackbot] updating style on behalf of aweits

* patch format

* change patch strategy, actually get the logic correct in
the patch

* only patch 2.16.1 onwards for aarch64

* __CUDACC__ not __NVCC__

* !(defined(__NVCC__) && defined(__CUDACC__))

---------

Co-authored-by: aweits <aweits@users.noreply.github.com>
2024-05-03 15:46:13 +02:00
Massimiliano Culpo
5c96e67bb1 Make runtimes depend on libc only on linux (#43981) 2024-05-03 15:40:02 +02:00
Marc T. Henry de Frahan
7008bb6335 Add rosco package (#43822)
* Add rosco package

* format

* remove unused

* Add in other versions

* start adding some patches

* finish adding the patches
2024-05-03 01:58:35 -06:00
Adam J. Stewart
14561fafff py-torch: set TORCH_CUDA_ARCH_LIST globally for dependents (#43962) 2024-05-03 09:11:59 +02:00
Massimiliano Culpo
89bf1edb6e Spec.satisfies: fix a bug with concrete spec from JSON (#43968)
Fix a bug triggered by missing a virtual on some transitive edge, in a subdag of a pure build dependency.
2024-05-02 22:16:02 -04:00
Todd Gamblin
cc85dc05b7 docs: re-enable google analytics (#43974)
We recently switched to using the new ReadTheDocs with "addons". That includes its own
analytics, which is nice, but we also want to continue using our GA4 analytics.

Adding GA4 is no longer supported by RTD, so we have to add it manually.

- [x] re-add the gtag to all pages, manually

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-02 21:56:19 -04:00
Adam J. Stewart
ae171f8b83 py-torch: conflict with newer cuda (#43969) 2024-05-02 18:47:33 -07:00
snehring
578dd18b34 minimap2: adding version 2.28 (#43972)
* minimap2: adding version 2.28
* minimap2: adding maintainer

---------

Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-02 18:45:59 -07:00
Garth N. Wells
a7a51ee5cf py-fenics-ffcx: update to v0.8 (#43929)
* Update FFCx and UFCx to v0.8
* Syntax fix
2024-05-02 09:53:31 -07:00
Stephanie Labasan Brink
960cc90667 variorum: add branch dev and version 0.8.0 (#43829)
* variorum: add branch dev and version 0.8.0
* formatting
2024-05-02 09:50:05 -07:00
Alex Richert
dea44bad8b grads: fix libpng and g2c deps (#43909)
* grads: fix libpng and g2c deps
* Update package.py
* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2024-05-02 09:42:15 -07:00
Richard Berger
e37870ff43 rdma-core: add versions 51.0, 50.0 and 49.1 (#43926) 2024-05-02 09:41:23 -07:00
Sajid Ali
3751642a27 mold: add new versions (#43931) 2024-05-02 09:39:09 -07:00
Nils Vu
0f386697c6 spectre: add versions, update constraints (#43936) 2024-05-02 09:38:06 -07:00
Alex Richert
67ce103b2c Update prod-util recipe (#43940)
* update prod-util recipe
* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2024-05-02 09:24:39 -07:00
Alex Richert
a8c9fa0e45 g2tmpl: add v1.12.0 (#43941) 2024-05-02 09:23:42 -07:00
Alex Richert
b56a133fce update grib-util recipe (#43939) 2024-05-02 09:22:03 -07:00
Seth R. Johnson
f0b3d33145 Celeritas: new version 0.4.3 (#43949) 2024-05-02 09:04:30 -07:00
Adam J. Stewart
32564da9d0 rust: add conflict for older GCC (#43958) 2024-05-02 08:36:06 -07:00
Stephen Hudson
8f2faf65dc libEnsemble: add v1.3.0 (#43944) 2024-05-02 08:35:06 -07:00
eugeneswalker
1d59637051 e4s ci: add py-amrex (#43904) 2024-05-02 08:57:26 -06:00
jdomke
97dc353cb0 libc: detect ARM flavor (#43959)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-05-02 15:59:29 +02:00
wspear
beebe2c9d3 Accept later pythons for tau@2.33+ (#43911)
* Accept later pythons for tau@2.33+

* separate forward compat bounds
2024-05-02 07:13:21 -06:00
Harmen Stoppels
2eb7add8c4 gcc: write builtin specs before modifications (#43956) 2024-05-02 06:40:10 -06:00
Harmen Stoppels
a9fea9f611 nghttp2: add diffutils (#43954) 2024-05-02 14:22:53 +02:00
Harmen Stoppels
9b62a9c238 gitlab ci: cache user cache (#43952) 2024-05-02 12:06:30 +02:00
wspear
f7eb0ccfc9 Revert #43701 (#43935)
PR #43701 is broken, preventing scorep from being installed. As explained in #43700 the issue is internal to scorep and can not be fixed in the package, at least by the method being attempted here.
2024-05-02 09:56:21 +02:00
Adrien Bernede
a0aa35667c Ignore external packages when pushing to buildcache automatically (--autopush) (#43930) 2024-05-02 09:50:10 +02:00
Luc Berger
b1d4fd14bc Nalu: adding support for Trilinos 14.2.0 for Nalu 1.6.0 (#43857) 2024-05-02 01:10:27 -06:00
John W. Parent
7e8415a3a6 Windows: auto-add WGL/SDK as externals (#43752)
Adds a pre-concretization check for the Windows SDK and WGL (Windows
GL) packages as non-buildable externals.

This is a redo of https://github.com/spack/spack/pull/43459, but makes
sure to modify the configuration scope outside of the bootstrap scope:
whichever is highest-precedence in the user's environment at the time
the concretization runs, which should either be an env scope or the
~ scope.

Adds pytest fixture mocking the check for WGL and WSDK as if they were
present.
2024-05-02 01:05:03 -06:00