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Author SHA1 Message Date
Adam J. Stewart
c8c795e7db watch: added new package (#13044) 2019-10-07 11:11:17 +02:00
Paul
7d0e7efabb Added go 1.13.1 and 1.12.10 (#12977) 2019-10-06 20:22:05 -05:00
Denis Davydov
79bd6bbd04 gnuplot: add 5.2.7 and fix qt dep (#13058) 2019-10-06 14:28:34 -05:00
Matthias Wolf
3d247d9567 freeimage: new package (#13049) 
* freeimage: new package

* Address comments.

* Whitespace
 2019-10-06 09:20:29 -05:00
Ruben Di Battista
ba72114ba2 unrar: Add package (#12908) 2019-10-06 09:16:25 -05:00
Oliver Breitwieser
f34162a5b8 Add missing py-contextlib2 (#13056) 
Change-Id: I8e0a90d4aa2c9f46230a6fe35ce5f4fa44672faf
 2019-10-06 09:15:29 -05:00
Denis Davydov
070a536e49 qt: help pick up dependencies (#11172) 
* qt: help pick up dependencies

* qt: add 5.12.5
 2019-10-05 21:13:38 -05:00
Pariksheet Nanda
19e6f55647 doc: fix #12245 non-functional libdwarf dependency (#12515) 
Applying accepted fix from spack/spack.io#4
 2019-10-05 21:07:18 -05:00
Michael Kuhn
bdb92f2d91 Consistently support pkg-config files in share subdirectory (#12838) 
While the build environment already takes share/pkgconfig into account,
the generated module files etc. only consider lib/pkgconfig and
lib64/pkgconfig.
 2019-10-05 21:03:35 -05:00
t-karatsu
c6b8d79ea6 Package/fujitsu mpi (#12807) 
* fujitsu-mpi: commit new package

* Add homepage.

* * Modified the MPI commands to a simple form.
* Unnecessary processing has been deleted.

* Add conflict for all compilers except the Fujitsu compiler.

* Fix typo.

* Delete versions.

* Delete conditions for specifying the Fujitsu compiler.
 2019-10-05 20:58:43 -05:00
Adam J. Stewart
608f732101 expect: fix darwin install name (#13042) 
* expect: fix darwin install name

* Fix expect binary as well
 2019-10-05 20:37:44 -05:00
Teodor Nikolov
e78ca66087 New package: cxxopts (#13035) 
* New package: cxxopts

* Use +unicode instead of unicode=True

- Make the unicode option more explicit

* [cxxopts] Fix white space warnings
 2019-10-05 20:36:59 -05:00
Adam J. Stewart
c45ecafd71 procps: new package (#13043) 2019-10-05 11:39:55 +02:00
Massimiliano Culpo
6a1021b81c bugfix: issue with custom dotkit root in config.yaml (#13046) 
When removing support for dotkit in #11986 the code trying to set the
paths of the various module files was not updated to skip it. This
results in a failure because of a key error after the deprecation
warning is displayed to user.

This commit fixes the issue and adds a unit test for regression.
Note that code for Spack chains has been updated accordingly but
no unit test has been added for that case.
 2019-10-04 23:42:21 -07:00
Federico Ficarelli
a362cf5ff6 grpc: new package (#13054) 
* Add grpc@1.23.1

* Let version in url match actual one
 2019-10-04 18:42:09 -05:00
Andreas Baumbach
e366f6ba39 llvm: update link to the document explaining codesign (#13047) 
Change-Id: I01242cbb43b0c62a659739a5d7e9d998dd27e794
 2019-10-04 13:31:43 -07:00
Robert Maynard
b1cdf8bd57 Update the VTK-m package with better defaults and cuda corrections (#12850) 2019-10-04 15:12:58 -04:00
Cody Balos
3cb4547348 superlu-dist: add openmp variant (#13052) 2019-10-04 13:48:56 -05:00
Toyohisa Kameyama
cb89949018 migrate: add zlib dependency. (#13039) 
* migrate: add zlib dependency.

* flake8.

* autotools related tools change to build.
 2019-10-04 13:14:09 -05:00
Felix Thaler
437236781d LLVM 9.0.0 (#13050) 2019-10-04 09:56:12 -07:00
Massimiliano Culpo
2cd800306d fftw: simplify the recipe and make use of specific targets (#12889) 
* fftw: grouped precisions in a single variant

* fftw: simd options are now based on target features and not on variants

* fftw: simplified computing the selected precisions
 2019-10-03 22:32:42 -05:00
t-karatsu
46e319ecd4 boost: Use gcc toolset for bootstrap with Fujitsu compiler. (#12876) 2019-10-03 22:20:55 -05:00
Toyohisa Kameyama
938bae1ab6 graphmap: add zlib dependency. (#13031) 2019-10-03 22:20:13 -05:00
Toyohisa Kameyama
b89fa3e01a fastqvalidator: add zlib dependency and Removes erroneous deletes in Chromosome (#13030) 2019-10-03 22:19:58 -05:00
Toyohisa Kameyama
4046e10b95 hapcut2: add zlib dependency. (#13032) 2019-10-03 22:19:43 -05:00
Toyohisa Kameyama
2233a7b493 liblbxutil: Add zlib dependency. (#13033) 2019-10-03 22:19:22 -05:00
Toyohisa Kameyama
bb1d0ff6fb metabat: Add zlib and ncurses dependency. (#13034) 2019-10-03 22:18:55 -05:00
Toyohisa Kameyama
58a64f69e7 muse: add zlib dependency. (#13040) 2019-10-03 22:18:27 -05:00
Toyohisa Kameyama
c97be22ff5 ngmlr: add zlib dependency. (#13041) 2019-10-03 22:18:12 -05:00
Andreas Baumbach
4e7ea627c8 fix ipykernel dependency, newer versions are python3-only (#13019) 
* fix ipykernel dependency, newer versions are python3-only

* Update var/spack/repos/builtin/packages/py-ipykernel/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-ipykernel/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-10-03 22:17:16 -05:00
George Hartzell
882843974b Update cctools to v7.0.18 (#13037) 
- add version/checksum info for v7.0.18
- update checksum for v6.1.1 to use sha256, while I have the editor
  open...
 2019-10-03 18:57:20 -05:00
Owen Solberg
bef702d0f3 updated manta checksum (#13038) 2019-10-03 18:23:47 -05:00
Adam J. Stewart
69acb024a5 Add py-flye 2.6 (#13025) 2019-10-03 10:32:00 -05:00
Adam J. Stewart
24f8d1042b Update compilers.yaml location in Getting Started docs (#13029) 2019-10-03 10:31:32 -05:00
Adam J. Stewart
dac34147c0 Add EasyBuild 4.0.0 (#13024) 
* Add EasyBuild 4.0.0

* Update homepage, remove no longer required deps

* Replace version ranges with fixed versions
 2019-10-03 16:48:42 +02:00
Chuck Atkins
b973f038fd Update ECP Data & Vis SDK packages (#13027) 
* ecp-io-sdk: Add faodel and sort variants

* ecp-viz-sdk: Re-enable catalyst, sort variants, turn on by default

* ecp-io-sdk and ecp-viz-sdk: Fix dependency variants
 2019-10-03 10:05:02 -04:00
Massimiliano Culpo
78577c0a90 Generic x86_64 code compiled with GCC uses non deprecated mtune flags (#13022) 
fixes #12928
 2019-10-03 10:31:03 +02:00
Massimiliano Culpo
76b9c56110 Remove support for generating dotkit files (#11986) 
Dotkit is being used only at a few sites and has been deprecated on new
machines. This commit removes all the code that provide support for the
generation of dotkit module files.

A new validator named "deprecatedProperties" has been added to the
jsonschema validators. It permits to prompt a warning message or exit
with an error if a property that has been marked as deprecated is
encountered.

* Removed references to dotkit in the docs
* Removed references to dotkit in setup-env-test.sh
* Added a unit test for the 'deprecatedProperties' schema validator
 2019-10-02 22:15:01 -07:00
Miroslav Stoyanov
b11984767b added tasmanian version 7.0 to spack (#13003) 2019-10-02 18:35:49 -05:00
Sinan
b084d095bc New package: mapnik (#12708) 2019-10-02 13:50:57 -07:00
Tiziano Müller
d99b92febd libint + cp2k: 2-stage build with 'tune' and 'fortran' variants (#12475) 
* libint: switch to 2-stage build for 2.6.0+

* libint: add tune and fortran variants

* cp2k: add support for libint >= 2.0

* cp2k: use pkg-config for linking libxc
 2019-10-02 21:31:19 +02:00
Toyohisa Kameyama
da18ac3a0f cdhit: add zlib dependency. (#13015) 
* cdhit: add zlib dependency.

* Add zlib variant.
 2019-10-02 12:55:05 -05:00
Toyohisa Kameyama
b85ff04681 denovogear: Add missing zlib depenbdency and fix open handling error. (#13017) 2019-10-02 12:54:50 -05:00
Toyohisa Kameyama
58c01792ef cnpy: add zlib dependency. (#13016) 2019-10-02 12:54:31 -05:00
Dan Lipsa
210dd594a1 Add cuda to paraview build. (#12996) 2019-10-02 12:00:03 -05:00
George Hartzell
21e95e4141 Singularity 3.4.1 still needs the makefile patch (#13008) 
* Singularity 3.4.1 still needs the makefile patch

* Constrain build patch to 3.4.0:3.4.1
 2019-10-02 11:59:11 -05:00
Sinan
afca223b3d new package: openldap (#12748) 
* new package: openldap

* fix mistake

* remove template text

* fix build error involving perl

* flake8

* improvements

* introduce multi valued variant for tls support

* improve tls variant

* overwrite build phase as opposed install

* improve style
 2019-10-02 11:58:46 -05:00
Toyohisa Kameyama
1550d5cae6 ants: missing zlib dependency and fix working directory in install. (#13010) 2019-10-02 11:58:25 -05:00
Toyohisa Kameyama
7d9514d3fa breakdancer: missing ncurses dependency. (#13011) 2019-10-02 11:57:05 -05:00
Toyohisa Kameyama
d238b9d394 breseq: fix dependency and limit compiler version. (#13013) 2019-10-02 11:56:37 -05:00