Commit Graph

17 Commits

Author SHA1 Message Date
Todd Gamblin
4af6303086
copyright: update copyright dates for 2020 (#14328) 2019-12-30 22:36:56 -08:00
Todd Gamblin
62927654dd checksums: use sha256 checksums everywhere
We'd like to use a consistent checksum scheme everywhere so that we can:

    a) incorporate archive checksums into our specs and have a
       consistent hashing algorithm across all specs.

    b) index mirrors with a consistent type of checksum, and not one that
       is dependent on how spack packages are written.

- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
2019-10-12 07:19:43 -07:00
Todd Gamblin
a2220f3150 flake8: make entire repository pass spack flake8 -a
- Fix trailing whitespace missed by the bug described in #12755.

- Fix other style issues that have crept in over time (this can happen
  when flake8 adds new checks with new versions)
2019-09-07 23:59:10 -07:00
Todd Gamblin
6f50cd52ed copyright: update license headers for 2013-2019 copyright. 2019-01-01 00:44:28 -08:00
Miles Perry
6020123a0b added bwa runtime dep (#10012) 2018-12-04 17:19:56 -06:00
Levi Baber
27e8fcb945 abyss: new version (#9981) 2018-12-04 13:02:36 +01:00
Todd Gamblin
eea786f4e8 relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers
- remove the old LGPL license headers from all files in Spack
- add SPDX headers to all files
  - core and most packages are (Apache-2.0 OR MIT)
  - a very small number of remaining packages are LGPL-2.1-only
2018-10-17 14:42:06 -07:00
alcharal
c46a7a61f0 Abyss: added variant maxk (#9280) 2018-10-02 17:27:25 -07:00
George Hartzell
b306493884 Fix digest for abyss@1.5.2 (#8341)
* Fix digest for abyss@1.5.2

The digest value for v1.5.2 appears to have changed.  This value works
for me, today.

The existing value v2.0.2 works as is.

* Use "download" URL for ABYSS

Following the suggestion of the project team, switch to using the
release tarballs from the "download" URL instead of the automagically
generated ones at the "archive" URL.

Converstation here: https://github.com/bcgsc/abyss/issues/232
2018-06-01 15:06:45 -05:00
Todd Gamblin
54f97d1dec
Update copyright on LLNL files for 2018. (#7592) 2018-03-24 12:13:52 -07:00
Levi Baber
b59c3bcf02 abyss: added missing libtool dependency (#7054) 2018-01-31 14:01:49 +01:00
Todd Gamblin
05fa302655
Replace github.com/llnl/spack with github.com/spack/spack (#6142)
We moved to a new GitHub org! Now make the code and docs reflect that.
2017-11-04 17:08:04 -07:00
Audrey Thoma
edae3ceae7 fixing abyss (#5973) 2017-10-28 17:05:52 +02:00
Michael Kuhn
84ae7872d3 Update copyright notices for 2017 (#5295) 2017-09-06 17:44:16 -10:00
Audrey Thoma
825c3c68a3 transabyss: new package (#4892)
* transabyss: new package and dependencies

* fixed build deps in igraph and version conflict spec in abyss

* fixed versioning stuff and package structure

*  fixed dep type

* fixing dep type for real this time
2017-08-07 15:42:49 -05:00
Todd Gamblin
cac4362f64 Make LICENSE recognizable by GitHub. (#4598) 2017-06-24 22:22:55 -07:00
Audrey Thoma
bcb8615fb0 Add abyss package (#4555)
* abyss

* abyss: deleting attemped test from script

* abyss: adding new package abyss

* abyss: partially fixing mpi dependency issue

* abyss: added mpi provider conflicts
2017-06-20 16:34:42 -05:00