Commit Graph

7183 Commits

Author SHA1 Message Date
Harmen Stoppels
e6f1b4e63a
Avoid duplicate detectable tag (#45160)
in case of inheritance the static tags prop may be updated multiple
times, and it turns out builder classes magically inherit from
traditional package classes
2024-07-10 18:14:28 +02:00
Stephen Nicholas Swatman
c458e985af
Set LD_LIBRARY_PATH for OneAPI compiler (#45059)
While trying to build packages with the OneAPI compiler version 2024.1 I
ran into the following error, indicating that the compiler is unable to
find some necessary libraries:

```
/storage/Software/oneapi/2024.1/compiler/2024.1/bin/sycl-post-link: error
  while loading shared libraries: libonnxruntime.1.12.22.721.so: cannot open
  shared object file: No such file or directory

  icpx: error: unable to execute command: No such file or directory

  icpx: error: sycl-post-link command failed due to signal (use -v to see
  invocation)
```

Indeed, `libonnxruntime.1.12.22.721.so` does come bundled with the
OneAPI compiler, but it is not available in the build environment by
default. In this commit, I update the custom environment created by
OneAPI to include the `lib/` directory in which these libraries reside
in the `LD_LIBRARY_PATH` environment variable.
2024-07-10 06:50:07 -06:00
Massimiliano Culpo
9001e9328a
Remove unnecessary copy.deepcopy calls (#45135) 2024-07-10 09:33:48 +02:00
Massimiliano Culpo
aa911eca40
Add compatibility of sequoia with previous macOS versions (#45127)
* Add compatibility of sequoia with previous macOS versions

* Add compatibility of sequoia with previous macOS versions
2024-07-09 17:48:24 -07:00
Peter Scheibel
56a1663cd9
spack find -c: search all concretized-but-not-installed specs (#44713)
Originally if you had `x -> y -> z`, and an env with `x` in its speclist that is concretized but not installed, then `spack find -c y` would not show anything. This was intended: `spack find` has up-until-now only ever listed out installed specs (and `-c` was for adding a preamble section about roots).

This changes `spack find` so:

* `-c` makes it search through all concretized specs in the env (in a sense it is anticipated that a concretized environment would serve as a "speculative" DB and users may want to query it like they query the DB outside of envs)
* Adds a `-i/--install-status` option, equivalent to `-I` from `spack spec`
* Shows install status for either `-c` or `-i`
* As a side effect to prior point, `spack find -i` can now distinguish different installation states (upstream/external)

Examples:

```
$ spack find -r
==> In environment findtest
==> 1 root specs
 -  raja

==> 6 installed packages (not shown)
==> 12 concretized packages to be installed (not shown)
```

```
$ spack find
==> In environment findtest
==> 1 root specs
 -  raja

-- darwin-ventura-m1 / apple-clang@14.0.3 -----------------------
berkeley-db@18.1.40  bzip2@1.0.8  diffutils@3.10  gmake@4.4.1  gnuconfig@2022-09-17  libiconv@1.17
==> 6 installed packages
==> 12 concretized packages to be installed (show with `spack find -c`)
```

```
$ spack find -c
==> In environment findtest
==> 1 root specs
 -  raja

-- darwin-ventura-m1 / apple-clang@14.0.3 -----------------------
[+]  berkeley-db@18.1.40  [+]  bzip2@1.0.8      -   cmake@3.29.4  [+]  diffutils@3.10  [+]  gmake@4.4.1           [+]  libiconv@1.17   -   nghttp2@1.62.0   -   pkgconf@2.2.0    -   readline@8.2
 -   blt@0.6.2             -   camp@2024.02.1   -   curl@8.7.1     -   gdbm@1.23       [+]  gnuconfig@2022-09-17   -   ncurses@6.5     -   perl@5.38.2      -   raja@2024.02.2   -   zlib-ng@2.1.6
==> 6 installed packages
==> 12 concretized packages to be installed


```
$ spack -E find
...
==> 82 installed packages
```
2024-07-09 11:53:20 -07:00
Massimiliano Culpo
54ee7d4165
Remove the "install_mockery_mutable_config" fixture (#45129)
This fixture was introduced in #16429, and made
redundant in #39024
2024-07-09 11:23:49 +02:00
Massimiliano Culpo
15efcbe042
Fix conflicting use of config and mutable_config fixtures in unit tests (#45106)
and add a fixture to detect use of conflicting fixtures
2024-07-09 09:51:04 +02:00
Harmen Stoppels
3212cf86f4
environments.rst: go from simple to advanced (#45004)
* environments.rst: go from simple to advanced
* improvements
* notes about activation
2024-07-08 15:36:18 -07:00
Harmen Stoppels
a04b12a3ef
spec.py: print right deptype in tree (#45091)
Fix a bug where Spec.tree with cover=nodes reduces deptypes from all
in-edges, including from nodes not reachable from the root, which almost
always happens for concrete specs
2024-07-08 18:25:57 +02:00
Harmen Stoppels
297874bfed
spec.py: fix __getitem__ looking outside of dag (#45090)
`Spec.__getitem__` queries dependent edges, which almost always point to
nodes outside the sub-dag considered. It should only ever look at edges
being traversed.
2024-07-08 14:53:51 +02:00
Massimiliano Culpo
74398d74ac
Add type-hints to RepoPath (#45068)
* Also, fix a bug with use_repositories + import spack.pkg
2024-07-08 11:48:39 +02:00
Harmen Stoppels
8a430f89b3
spack -C <env>: use env config w/o activation (#45046)
Precedence:

1. Named environment
2. Anonymous environment
3. Generic directory
2024-07-06 22:02:25 -07:00
Todd Gamblin
ba79542f3c
spack gc: remove debug print statement (#45067)
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-07-05 22:36:45 +02:00
Harmen Stoppels
1d8bdcfc04
config: fix class hierarchy (#45044)
1. Avoid that `self.path` is of type `Optional[str]`
2. Simplify immutable config with a property.
2024-07-05 12:41:13 +02:00
Massimiliano Culpo
95cf341b50
Inject dependencies in repo classes (#45053) 2024-07-05 12:00:41 +02:00
Wouter Deconinck
04044a9744
containers: rm centos7 since EOL (#45049) 2024-07-04 22:22:23 +02:00
Jordan Galby
491cb278f3
spack audit packages: Fix message (#45045)
Fix message formatting of the "virtual dependency cannot have variants" error.
2024-07-04 14:30:30 +02:00
Massimiliano Culpo
c5cdc2c0a2
Heuristic decays to default over time (#45023)
This modifies heuristic to decay to clingo default
over time. The hope is that this helps with specs
that have an optimal solution with a high penalty.

Let target and compiler heuristic decay too, do not
guess compiler
2024-07-04 08:19:52 +02:00
Adam J. Stewart
f951f38883
Add support for macOS Sequoia (#45018) 2024-07-03 10:59:26 -07:00
Massimiliano Culpo
6b85f6b405
ci: deprecate the --dependencies and --optimize option (#45005) 2024-07-02 22:06:52 +02:00
Harmen Stoppels
5b4edb9499
queue -> stack (#45002) 2024-07-02 16:41:29 +02:00
Harmen Stoppels
a6e6093922
spack_yaml.py: fix default_flow_style (#44998) 2024-07-02 14:01:13 +02:00
Harmen Stoppels
2e8b4e660e
spack_yaml: add anchorify function (#44995)
This adds spack.util.spack_yaml.anchorify, which takes a non-cyclic
dict/list structure, and replaces identical values with (back)
references to the first instance, so that yaml serialization will use
anchors.

`repr` is used to identify sub-dags, which in principle is quadratic
complexity in depth of the graph, but in practice the depth is O(1) so
this should not matter.

Then this is used in CI to reduce the size of generated YAML files to
30% of their original size.
2024-07-02 14:00:19 +02:00
Harmen Stoppels
fff126204c
cmd/develop.py: fix readability (#44980)
stage[0] is assumed to be for sources, 1: and onwards is
patches/resources, make that a bit more clear.
2024-07-01 12:14:00 -07:00
Kun Wu
c6da4d586b
cuda: add v12.5.0 (#44971)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-07-01 17:45:04 +00:00
Tamara Dahlgren
61d6fc70e8
Docs: include cmake spec property for the command (#44956) 2024-07-01 10:28:26 -07:00
Harmen Stoppels
fa3f27e8e7
archive.py: undo unrelated changes from #43851 (#44947) 2024-07-01 11:35:32 +02:00
Harmen Stoppels
6b0fefff29
Use composite stage also for develop specs (#44950) 2024-07-01 11:24:16 +02:00
Massimiliano Culpo
f613316282
Flag propagation: restrict to link/run (#44925)
In practice people don't care about having their build dependencies reinstalled with say cflags=-O3 if that is what is set at the input spec, so restrict propagation to link/run deps only.

Also simplify the encoding in asp.
2024-07-01 09:57:51 +02:00
Massimiliano Culpo
1b5b74390f
neoverse-v1: restore py-cinemasci (#44976)
Use a different tactic for determining conflicts.

Give more priority to setting False very old versions.
2024-07-01 09:53:24 +02:00
Harmen Stoppels
e34d9cbe5f
Remove DIYStage (#44949) 2024-07-01 08:33:56 +02:00
Harmen Stoppels
0b3b49b4e0
installer.py: handle external roots the same (#44917)
There was logic not to enqueue build requests for externals if they occur as
roots. That's unnecessary.
2024-06-28 11:26:56 +02:00
Dan Lipsa
4c7d18a772
Spack on Windows: fix "spack load --list" and "spack unload" (#35720)
Fix the following on Windows:

* `spack load --list` (this printed 0 packages even if packages were
  loaded)
* `spack unload <package>` (this said that the package is not loaded
  even if it was)

Update unit tests for `spack load` to also run on Windows (specifically
for ".bat"). This involved refactoring a few tests to parameterize
based on whether the unit tests are being run on a Windows system
(and to account for batch syntax).
2024-06-27 11:44:36 -07:00
Matthew Whitlock
22c86074c8
Fix bug in logfile parsing (#42706)
* Fix bug in logfile parsing

* Cite ECMA-48 standards for CSI

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-27 07:07:30 -06:00
Massimiliano Culpo
ef9e449322
Ensure parent runtime version >= child (#44834)
Fixes a bug where old gcc-runtime libraries would be loaded at runtime, but newer are required by dependencies, breaking the binaries.
2024-06-27 14:58:42 +02:00
dependabot[bot]
d6419f32b8
build(deps): bump mypy from 1.10.0 to 1.10.1 in /lib/spack/docs (#44885)
Bumps [mypy](https://github.com/python/mypy) from 1.10.0 to 1.10.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.10.0...v1.10.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-06-27 12:40:14 +02:00
Miguel
60ed682577
Fix typo in docs (#44891)
Fixes on the rst formatting of the make_jobs
2024-06-27 12:32:16 +02:00
Wouter Deconinck
f916b50491
containers: centos:stream -> centos:stream9 (#44876) 2024-06-27 10:38:56 +02:00
Massimiliano Culpo
b0b6016e12
ASP-based solver: add a generic rule for propagation (#44870)
This adds a generic propagate/2 rule to propagate any
fact to children in the DAG.
2024-06-26 16:02:00 +02:00
Massimiliano Culpo
c0f9f47b8c
Simplify and improve solver heuristic (#44893)
When we changed how to deal with errors in November,
we didn't realize that for an unconstrained choice
rule it is more important in the heuristic to guess
what is NOT in the answer set, since it will be the
majority of options.

Previously this was following automatically from what
was in the answer set, via `1 { ... } 1` cardinality
constraints.

Here we improve the heuristic and the solve time for specs.
2024-06-26 13:08:41 +02:00
psakievich
54d192e026
Steal source was not assigning the package class (#44886)
Fetcher was missing the package class assignment
2024-06-25 23:17:56 -07:00
Tamara Dahlgren
baf82c0245
Docs: Update stand-alone test information (#44755)
Update and slightly reorganize stand-alone test information to include new and improved examples and more links that can be used in PR feedback.
2024-06-25 13:33:41 -07:00
Miguel
536856874c
add documentation for make_jobs variable (#44838)
* add documentation for make_jobs variable

* apply suggested changes

* Update packaging_guide.rst

add suggestions to the documentation

* Update packaging_guide.rst

fix missing quotes in the documentation

* suggestions to packaging_guide.rst
2024-06-25 11:24:49 -06:00
Nicole C
d8b0df6f5b
Make url_fetch tests work on Windows (#44809) 2024-06-25 07:34:11 +00:00
Harmen Stoppels
0282fe9efd
spec_list: do not resolve abstract hashes (#44760) 2024-06-24 16:43:01 +02:00
Tamara Dahlgren
3848c41494
Bugfix: test_is_externally_detectable needs to use mockpackages (#44795) 2024-06-21 12:24:46 +02:00
Harmen Stoppels
f650133f83
build_environment: fix ccache error handling (#44740) 2024-06-20 11:16:24 +02:00
dependabot[bot]
a82fb33b31
build(deps): bump flake8 from 7.0.0 to 7.1.0 in /lib/spack/docs (#44752) 2024-06-18 08:27:15 +02:00
dependabot[bot]
5f35a90529
build(deps): bump urllib3 from 2.2.1 to 2.2.2 in /lib/spack/docs (#44751) 2024-06-18 08:27:04 +02:00
Veselin Dobrev
6e7fb9a308
MFEM: add new version v4.7 (#44010)
* Core change: logic for extracting RPATHs from modules may return
  `None`: filter this out of the set of RPATHs that is auto-generated
* Core change: `CachedCMakePackage` no longer adds ldflags to
  `CMAKE_STATIC_LINKER_FLAGS`: generally these flags are not appropriate
  for static linking (e.g. invocation of `ar`)
* [mfem] Add version 4.7
* [mfem] Add variant for precision (single/double). Enforce consistency
  for precision amongst mfem and hypre/petsc/mumps dependencies
* [mfem] Add cxxstd (and related constraints preventing use of
  old cxxstd values for newer versions of some dependencies)
* [hypre] In line with prior point, added support for specifying
  precision
* [petsc] Add config option to avoid error when building against
  `superlu-dist+rocm`
* [hiop] add proper `raja`/`umpire`/`camp` version constraints for
  `hiop` versions 0.3.99-0.4.x; require `+raja` for `+rocm`, and
  add dependency on `hiprand` for `+rocm`
* [butterflypack, mfem, strumpack, suite-sparse] Require
  `CRAYLIBS_{target-family}` env var to be defined
* [suite-sparse] versions `@7.4:` changed install location of headers:
  add symlink from old location to new location
* [zlib-ng] Fix error where shared libs were not successfully built for
  `%cce@17` (the build did not fail, but the finished `zlib-ng%cce@17`
  install did not have shared libs)
2024-06-11 16:39:22 -07:00
psakievich
337bf3b944
Enable and constrain reuse for GitVersion installations (#43859)
* Preserve higher weight for CLI git ref versions

Currently the concretizer fails if you reuse a git ref version
that has already been installed but modify the spec at all.

See #38484 for futher diagnosis

The issue here is that since there is no established provenance for
these versions the highest weight they are currently assigned is
that of prior install. Re-use checks then fail because the weight of
the version is identical to the solver.

Ironically, these versions are given the highest weights possible when
specified on the CLI for the first time.  They should only appear in a
DAG if they are an exact match or if the user specifies them at the CLI.
Therefore it makes sense to preserve their higher ordering.

Getting this right is critical to moving all branch based versions to a pinned
git-ref in the future.

* [@spackbot] updating style on behalf of psakievich

* Update lib/spack/spack/solver/asp.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Add provenance specific to git ref installs

* Sensitvity to name that I could not track down

* Add regression test

* Adjust test

* Add prefer standard unit-test

* Style

* Add required mock

* Format and mark

* Make unit-test case reproduce CLI investigation

* Remove unnecessary mock package

* [@spackbot] updating style on behalf of psakievich

* Use already developed fixture

* Add zlib-ng to mocks again

* Remove accidental adds

* Remove maintainer

* [@spackbot] updating style on behalf of psakievich

* Rename test file

* [@spackbot] updating style on behalf of psakievich

* Remove unused imports

* Update tests

* [@spackbot] updating style on behalf of psakievich

* Style

* Update lib/spack/spack/test/concretize.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Update solver rule

* Duplicate installed rules for installed_git_version

* Revert "Duplicate installed rules for installed_git_version"

This reverts commit 17223fc8d1.

---------

Co-authored-by: psakievich <psakievich@users.noreply.github.com>
Co-authored-by: Greg Becker <becker33@llnl.gov>
2024-06-11 14:57:09 -06:00
dependabot[bot]
f80287166e
build(deps): bump sphinx-design from 0.5.0 to 0.6.0 in /lib/spack/docs (#44360)
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.5.0 to 0.6.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.5.0...v0.6.0)

---
updated-dependencies:
- dependency-name: sphinx-design
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-06-06 14:34:59 +02:00
dependabot[bot]
a20d34b8aa
build(deps): bump pytest from 8.2.1 to 8.2.2 in /lib/spack/docs (#44553)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.2.1 to 8.2.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.2.1...8.2.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-06-06 08:38:54 +02:00
Harmen Stoppels
3ffe02a2fe
spack edit: allow edit multiple files at once (#44416) 2024-06-05 14:19:11 +02:00
Todd Gamblin
278f5818b7
python: make every view a venv (#44382)
#40773 introduced python-venv, which improved build isolation and avoids issues with,
e.g., `ubuntu`'s system python modifying `sysconfig` to include a (very unwanted)
`local` directory within the default install layout.

This addresses a few cases where #40773 removed functionality, without harming the
default cases where we use `python-venv`.

Traditionally, *every* view with `python` in it was essentially a virtual environment,
because we would copy the `python` interpreter and `os.py` into every view when linking.
We now rely on `python-venv` to do that, but only when it's used (i.e. new builds) and
only for packages that have an `extends("python")` directive.

This again makes every view with `python` in it a virtual environment, but only
if we're not already using a package like `python-venv`. This uses a different
mechanism from before -- instead of using the `virtualenv` trick of copying `python`
into the prefix, we instead create a `pyvenv.cfg` like `venv` (the more modern way
to do it).

This fixes two things:
1. If you already had an environment before Spack `v0.22` that worked, it would
   stop working without a reconcretize and rebuild in `v0.22`, because we no longer
   copy the python interpreter on link. Adding `pyvenv.cfg` fixes this in a more
   modern way, so old views will keep working.

2. If you have an env that only includes python packages that use `depends_on("python")`
   instead of `extends("python")`, those packages will now be importable as before,
   though they won't have the same level of build isolation you'd get with `extends`
   and `python-venv`.

* views: avoid making client code deal with link functions

Users of views and ViewDescriptors shouldn't have to deal with link functions -- they
should just say what type of linking they want.

- [x] views take a link_type, not a link function
- [x] views work out the link function from the link type
- [x] view descriptors and commands now just tell the view what they want.

* python: simplify logic for avoiding pyvenv.cfg in copy views

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-06-04 09:52:21 -06:00
Todd Gamblin
89a0c9f4b3
nvhpc: Do not use -Wno-error with nvhpc (#44142)
In #30882, we made Spack ignore `-Werror` calls so that it could more easily build
projects that inject `-Werror` into their builds. We did this by translating them to
`-Wno-error` in the compiler wrapper. However, some compilers (like `nvhpc`) do not
support `-Wno-error`. We need to exclude them from this feature until they do.

- [x] make a property on `PackageBase` for `keep_werror` that knows not to use it for
      `nvhpc`.

- [x] update property so that it keeps only the specific `-Werror=...` args for newer nvhpc's,
      which support `-Wno-error` but not `-Wno-error=...`

---------

Co-authored-by: William Mou <william.mou1024@gmail.com>
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-06-04 03:46:35 -07:00
Todd Gamblin
85f13442d2
Consolidate concretization output for environments (#44489)
When Spack concretizes environments, it prints every (newly concretized) root spec
individually with all of its dependencies. For most reasonably sized environments, this
is too much output. This is true for three commands:

* `spack concretize` when concretizing an environment with newly added specs
* `spack install` when installing an environment with newly added specs
* `spack spec` with no arguments in an environment

The output dates back to before we had unified environments or nicer spec traversal
routines, and we can improve it.

This PR makes environment concretization output analogous to what we do for regular
specs. Just like `spack spec` for a single spec, we show all root specs with no
indentation, so you can easily see the specs you explicitly requested. Dependencies are
shown:

1. With indentation according to their depth in a breadth-first traversal starting at
   the roots;
2. Only once if they appear on paths from multiple roots

So, the default is now consistent with `spack spec` for one spec--it's `--cover=nodes`.
i.e., if there are 100 specs in your environment, you'll get 100 lines of output.

If you want to see more details, you can do that with `spack spec` using the arguments
you're already familiar with. For example, if you wanted to see dependency types and
*all* dependencies, you could use `spack spec -l --cover=edges`. Or you could add
deptypes and namespaces with, e.g. `spack spec -ltN`.

With no arguments in an environment, `spack spec` concretizes (if necessary) and shows
the concretized environment. If you run `spack concretize` *first*, inspecting the
environment repeatedly with `spack spec` will be fast, as everything is already in the
`spack.lock` file.

- [x] factor most logic of `Spec.tree()` out of `Spec` class into `spack.spec.tree()`,
      which can take multiple specs as roots.
- [x] make `Spec.tree()` call `spack.spec.tree()`
- [x] `spack.environment.display_specs()` now uses `spack.spec.tree()`
- [x] Update `spack concretize`
- [x] Update `spack install`
- [x] Update `spack spec` to call `spack.spec.tree()` for environments.
- [x] Continue to output specs individually for `spack spec` when using
      `--yaml` or `--json`
2024-06-03 13:29:14 -07:00
Harmen Stoppels
392396ded4
traverse: pass key correctly (#44460)
Fixes a bug where custom keys to identify nodes were not passed
correctly.
2024-05-31 08:26:38 -07:00
John W. Parent
a7381a9413
Bootstrapping: don't use Mac OS binaries on Windows (#44193)
`BuildcacheBootstrapper` uses `Spec.intersects` to match specs needed
for bootstrapping against the binary cache. The specs were not
sufficiently-detailed to prevent matching e.g. cached binaries for
Mac OS on Windows; this commit adds the platform to each requested
bootstrap spec to prevent that.
2024-05-30 17:10:29 -06:00
Massimiliano Culpo
f242e0fd0c
remove platform=cray (#43796)
Remove support for `cray` as a separate platform.

Any platform previously detected as `cray` is now detected as `linux`.

Users who still need platform=cray have to stick to Spack 0.22
2024-05-30 14:21:32 +02:00
Harmen Stoppels
f44f5b0db0
tests: use fewer default paths (#44432)
Set config:install_tree:root and modules:default:roots to something
sensible.
2024-05-30 08:12:19 +02:00
Harmen Stoppels
39ace5fc45
concretizer: enforce host compat when reuse only (#44428)
Fixes a bug in the concretizer where specs depending on a host
incompatible libc would be used. This bug triggers when nothing is
built.

In the case where everything is reused, there is no libc provider from
the perspective of the solver, there is only compatible_libc. This
commit ensures that we require a host compatible libc on any reused
spec, additionally to requiring compat with the chosen libc provider.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-05-30 07:31:28 +02:00
Harmen Stoppels
70412612c7
installer: improve init signature and explicits (#44374)
Change the installer to take `([pkg], args)` in the constructor instead
of `[(pkg, args)]`. The reason is that certain arguments are global
settings, and the new API ensures that those arguments cannot be
different across different "build requests".

The `explicit` install arg is now a list of hashes, and the installer is
no longer responsible for determining what package is installed
explicitly. This way environment installs can simply pass the list of
environment roots, without them necessarily being explicit build
requests. For example an env with two roots [a, b], where b depends on
a, would not always cause spack install to mark b as explicit.

Notice that `overwrite` already took a list of hashes, this makes
`explicit` consistent.

`package.do_install(explicit=True)` continues to take a boolean.
2024-05-29 08:25:34 +02:00
Harmen Stoppels
e461234865
link: directly bind to os.* on non-windows (#44400)
The windows wrappers for basic functions like `os.symlink`,
`os.readlink` and `os.path.islink` in the `llnl.util.symlink` module
have bugs, and trigger more file system operations on non-windows than
they should.

This commit just binds `llnl.util.symlink.symlink = os.symlink` etc so
built-in functions are used on non-windows
2024-05-27 13:37:04 +02:00
Peter Scheibel
72deb53832
Make spack clean env-aware (#44227)
`spack clean <spec>` will now resolve specs based on the active environment if one is active.

If an env is active but no matching spec is found, this will fall back on fully concretizing.
2024-05-24 15:00:50 -07:00
Massimiliano Culpo
7c87253fd8
Make strong preferences even stronger (#44373)
Before this PR, if Spack could see a possibility to reuse a spec that
doesn't match a strong preference, it would do so. After the PR, a
strong preference would take precedence.
2024-05-24 10:06:28 -07:00
Samuel Khuvis
d88d720577
add mvapich support for intel scalapack_libs (#44246)
* add mvapich support for intel scalapack_libs

* Add mvapich support for oneapi scalapack_libs
2024-05-24 02:51:53 +00:00
Greg Becker
b61bae7640
bugfix: external detection for compilers with os but not target (#44156)
avoid calling `spec.target` when None.

When an external compiler package has an `os` set but no `target` set, Spack
currently falls into a codepath that calls `spec.target` (which itself calls
`spec.architecture.target.Microarchitecture`) when `spec.architecture.target`
is None, throwing an error.

e.g.

```
packages:
  gcc:
    externals:
    - spec: gcc@12.3.1 os=rhel7
      prefix: /usr
```

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-24 00:13:36 +00:00
Harmen Stoppels
92000e81b8
absolutify_elf_sonames.py: fix _patchelf (#44343) 2024-05-23 14:05:10 +00:00
Massimiliano Culpo
f60e548a0d
ASP-based solver: fix reusing externals on linux (#44316)
We need to tell clingo the libc compatibility of external nodes
in buildcaches or stores, to allow reuse.
2024-05-23 14:37:48 +02:00
mSamiolo
b9816a97fc
docs: update chain.rst to improve discussion of upstreams (#43918)
* Update chain.rst

* Update lib/spack/docs/chain.rst

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update lib/spack/docs/chain.rst

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* docs: rm leading spaces to avoid indent

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-22 22:04:53 +00:00
pauleonix
7503a41773
cuda: add v12.4.1 (#43488) 2024-05-22 10:50:56 +02:00
Massimiliano Culpo
3f472039c5
Take a lock before querying installed_dependents (#44301)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-05-21 13:16:04 -06:00
Massimiliano Culpo
8020a111df
Demote a warning to debug message, if C compiler is not there (#44182) 2024-05-21 14:09:29 +02:00
dependabot[bot]
86fb547f7c
bump pytest from 8.2.0 to 8.2.1 --- (#44282)
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-21 13:42:22 +02:00
Massimiliano Culpo
72f276fab3
ASP-based solver: fix version optimization for roots (#44272)
This fixes a bug occurring when two root specs need to select
old versions, and these versions have the same penalty in the
optimization. This sometimes caused an older version to be
preferred to a more recent one.

The issue was the omission of `PackageNode` in the optimization
tuple.
2024-05-21 08:41:09 +02:00
Scott Wittenburg
29d4a5af44
gitlab ci: fix untouched spec pruning on windows (#44279)
Use correct path separator in get_all_package_diffs for all platforms.
Ensures correct package change computation on Windows when pruning unchanged specs in Gitlab CI
2024-05-21 00:56:48 +00:00
Wouter Deconinck
5eebd65366
audit: disallow github.com/org/repo/pull/n/commits/hash.patch?full_index=1 (#44212)
* audit: disallow github.com/org/repo/pull/n/commits/hash.patch?full_index=1

* [@spackbot] updating style on behalf of wdconinc

* audit: fix style

* audit: github.com/o/r/pull/n/commits/sha.patch -> sha.patch

* [@spackbot] updating style on behalf of wdconinc

* Revert "[@spackbot] updating style on behalf of wdconinc"

This reverts commit 2ecec99238.

* Revert "audit: github.com/o/r/pull/n/commits/sha.patch -> sha.patch"

This reverts commit 5bd7da2cad.

* fix: modify audit message with suggested fix

* audit: github.com/o/r/pull/n/commits/sha.patch -> /o/r/commit/sha.patch?full_index=1

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-05-19 09:30:19 -05:00
Scott Wittenburg
b33e2d09d3
oci buildcache: handle pagination of tags (#43136)
This fixes an issue where ghcr, gitlab and possibly other container registries paginate tags by default, which violates the OCI spec v1.0, but is common practice (the spec was broken itself). After this commit, you can create build cache indices of > 100 specs on ghcr.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-05-18 11:57:53 +02:00
Todd Gamblin
77c83af17d
docs: remove warning about repositories and package extension (#44247)
Local package repositories are very well supported and we test them extensively, so this
warning from 8 years ago can be removed from the docs.
2024-05-17 22:03:57 +00:00
Jonathon Anderson
6a40a50a29
hpcviewer: Update URLs to use GitLab release assets (#44129) 2024-05-17 18:43:13 +02:00
Chris Marsh
24edc72252
docs: show phase signature for builders (#44067) 2024-05-17 18:16:31 +02:00
Andrew-Dunning-NNL
a24ca50fed
Fix broken link in docs (#44217) 2024-05-17 12:58:11 +00:00
Harmen Stoppels
9dbb18219f
build_environment.py: deal with rpathing identical packages (#44219)
When multiple gcc-runtime packages exist in the same link sub-dag, only rpath
the latest.
2024-05-17 12:29:56 +02:00
John W. Parent
81fe460194
Gitlab CI: Windows Configs (#43967)
Add support for Gitlab CI on Windows

This PR adds the config changes required to configure and execute
Gitlab pipelines running Windows builds on Windows runners using
the existing Gitlab CI infrastructure (and newly added Windows 
infrastructure).

* Adds support for generating child pipelines dispatched to Windows runners
* Refactors the relevant pre-scripts, scripts, and post scripts to be compatible with Windows
* Adds Windows config section describing Windows jobs
* Adds VTK as Windows build stack (to be expanded later)
* Modifies proj to build on Windows
* Refactors Windows rpath symlinking to avoid system libs and externals

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2024-05-16 17:00:02 -06:00
John W. Parent
1ce09847d9
Prefer llnl.util.symlink.readlink to os.readlink (#44126)
Symlinks on Windows can use longpath prefixes (\\?\); these are fine
in the context of win32 API interactions but break numerous facets of
Spack behavior that rely on string parsing/matching (archiving,
binary distributions, tarball extraction, view regen, etc).

Spack's internal readlink method (llnl.util.symlink.readlink)
gracefully handles this by removing the prefix and otherwise behaving
exactly as os.readlink does, so we should prefer that in all cases.
2024-05-16 10:56:04 -07:00
Todd Gamblin
d189387c24
bugfix: add arg to write_line_break() in spack_yaml (#42727)
`ruamel`'s `Emitter.write_line_break()` method takes an extra argument that we forgot to
implement in our custom emitter.
2024-05-15 19:25:06 -07:00
John W. Parent
43291aa723
Cdash reporting timeout (#44213)
* Add timeout to cdash reporter PUT request

Add cdash timeout everywhere
Correct mock responder api

* Style

* brief doc
2024-05-15 15:41:51 -04:00
Harmen Stoppels
4f111659ec
glibc: detect from "Free Software Foundation" not "gnu" (#44154)
which should be more generic
2024-05-13 20:11:27 +02:00
Greg Becker
d4fd6caae0
spack uninstall: improve error message for dependent environment (#44149) 2024-05-13 14:58:13 +02:00
Adam J. Stewart
725f427f25
spack checksum: do not add expand=False to wheels (#44118) 2024-05-13 10:01:47 +02:00
Wouter Deconinck
f8f01c336c
clang: support cxx20_flag and cxx23_flag (#43438)
* clang: support cxx20_flag and cxx23_flag

* clang: coverage test cxx{}_flag and c{}_flag additions
2024-05-12 07:45:59 -07:00
Todd Gamblin
12e3665df3
Bump version on develop to v0.23dev0 (#44137) 2024-05-11 18:01:50 +02:00
Harmen Stoppels
66d297d420
oci: improve default_retry (#44132)
Apparently urllib can throw a range of different exceptions:

1. HTTPError
2. URLError with e.reason set to the actual exception
3. TimeoutError from getresponse, which is not wrapped
2024-05-11 15:43:32 +02:00
John W. Parent
095aba0b9f
Buildcache/ensure symlinks proper prefix (#43851)
* archive: relative links only

Ensure all links written into tarfiles generated from Spack prefixes do not contain symlinks pointing outside the prefix

* binary_distribution: limit extraction to prefix

Ensure files extracted from spackballs are not links pointing outside of the prefix

* Ensure rpaths are properly set on Windows

* hard error on extraction of absolute links

* refactor for non link-modifying approach

* Restore tarball extraction to original impl

* use custom readlink

* cleanup symlink module

* make lstrip
2024-05-10 13:00:40 -05:00
John W. Parent
4270136598
Windows: Non config changes to support Gitlab CI (#43965)
* Quote python for shlex

* Remove python path quoting patch

* spack env: Allow `C` "protocol" for config_path

When running spack on windows, a path beginning with `C://...` is a valid path.

* Remove makefile from ci rebuild

* GPG use llnl.util.filesystem.getuid

* Cleanup process_command

* Remove unused lines

* Fix tyop in encode_path

* Double quote arguments

* Cleanup process_command

* Pass cdash args with =

* Escape parens in CMD script

* escape parens doesn't only apply to paths

* Install deps

* sfn prefix

* use sfn with libxml2

* Add hash to dep install

* WIP

* REview

* Changes missed in prior review commit

* Style

* Ensure we handle Windows paths with config scopes

* clarify docstring

* No more MAKE_COMMAND

* syntax cleanup

* Actually correct is_path_url

* Correct call

* raise on other errors

* url2path behaves differently on unix

* Ensure proper quoting

* actually prepend slash in slash_hash

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
2024-05-10 13:00:13 -05:00
Harmen Stoppels
e7112fbc6a
PythonExtension: fix issue where package does not extend python (#44109) 2024-05-10 10:47:37 +02:00
Massimiliano Culpo
c7cf5eabc1
Fix filtering external specs (#44093)
When an include filter on externals is present, implicitly
include libcs.

Also, do not penalize deprecated versions if they come
from externals.
2024-05-09 18:50:15 +02:00
Massimiliano Culpo
f5430b16bc
Bump removal version in deprecation messages (#44064) 2024-05-08 08:49:14 +02:00
Tamara Dahlgren
2446695113
Remove dead environment creation code (#44065) 2024-05-07 22:49:06 -06:00
dependabot[bot]
8b4cbbe7b3
build(deps): bump pygments from 2.17.2 to 2.18.0 in /lib/spack/docs (#44044)
Bumps [pygments](https://github.com/pygments/pygments) from 2.17.2 to 2.18.0.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.17.2...2.18.0)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-07 18:55:04 +02:00
Richarda Butler
be71f9fdc4
Include concrete environments with include_concrete (#33768)
Add the ability to include any number of (potentially nested) concrete environments, e.g.:

```yaml
   spack:
     specs: []
     concretizer:
         unify: true
     include_concrete:
     - /path/to/environment1
     - /path/to/environment2
```

or, from the CLI:

```console
   $ spack env create myenv
   $ spack -e myenv add python
   $ spack -e myenv concretize
   $ spack env create --include-concrete myenv included_env
```

The contents of included concrete environments' spack.lock files are
included in the environment's lock file at creation time. Any changes
to included concrete environments are only reflected after the environment
is re-concretized from the re-concretized included environments.

- [x] Concretize included envs
- [x] Save concrete specs in memory by hash
- [x] Add included envs to combined env's lock file
- [x] Add test
- [x] Update documentation

    Co-authored-by: Kayla Butler <<butler59@llnl.gov>
    Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.co
m>
    Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
    Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-07 09:32:40 -07:00
Massimiliano Culpo
05c1e7ecc2
Update the tutorial command to point to releases/v0.22 (#44056) 2024-05-07 17:56:29 +02:00
Massimiliano Culpo
f7afd67a26
Remove spurious ASP debug lines (#44051) 2024-05-07 11:28:38 +02:00
psakievich
d22bdc1c4e
certs: fix interpolation and disallow relative paths (#44030) 2024-05-07 11:16:32 +02:00
Massimiliano Culpo
2db5bca778
Warn users of the future removal of platform=cray (#43980) 2024-05-07 10:30:23 +02:00
Harmen Stoppels
bcd05407b8
llnl.util.tty.color._force_color: init in global scope (#44036)
Currently SPACK_COLOR=always is not respected in the build process on
macOS, because the global `_force_color` is re-evaluated in global scope
during module setup, where it is always `None`.

So, move global init bits from main.py to the module itself.
2024-05-07 09:49:46 +02:00
Massimiliano Culpo
e178c58847
Respect requests when filtering reused specs (#44042)
Some specs which were excluded from reuse,
are currently added back to the solve when
we traverse dependencies of other reusable
specs.

This fixes the issue by keeping track of what
we can explicitly reuse.
2024-05-07 09:06:51 +02:00
Harmen Stoppels
125206d44d
python: always use a venv (#40773)
This commit adds a layer of indirection to improve build isolation with 
and without external Python, as well as usability of environment views.

It adds `python-venv` as a dependency to all packages that `extends("python")`, 
which has the following advantages:

1. Build isolation: only `PYTHONPATH` is considered in builds, not 
   user / system packages
2. Stable install layout: fixes the problem on Debian, RHEL and Fedora where 
   external / system python produces `bin/local` subdirs in Spack install prefixes. 
3. Environment views are Python virtual environments (and if you add 
   `py-pip` things like `pip list` work)

Views work whether they're symlink, hardlink or copy type.

This commit additionally makes `spec["python"].command` return 
`spec["python-venv"].command`. The rationale is that packages in repos we do 
not own do not pass the underlying python to the build system, which could still 
result in incorrectly computed install layouts.

Other attributes like `libs`, `headers` should be on `python` anyways and need no change.
2024-05-06 16:17:35 +02:00
Massimiliano Culpo
d654d6b1f4
Remove Fedora 37 and 38, Ubuntu 18 from CI (#44006) 2024-05-06 15:51:45 +02:00
Harmen Stoppels
9b4ca0be40
clingo bootstrap: remove 3.12 patch and concretizer workarounds (#44028) 2024-05-06 15:00:41 +02:00
Harmen Stoppels
dc71dcfdc2
bootstrap: lazy bootstrapping of clingo and GnuPG (#44026)
Currently bootstrapping from source fails because clingo requires gnupg
requires clingo.

This commit stops eager bootstrapping. We don't need `patchelf` nor `gnupg`
generally. They're bootstrapped when needed.
2024-05-06 14:02:39 +02:00
Greg Becker
1f31c3374c
External package detection for compilers (#43464)
This creates shared infrastructure for compiler packages to implement the 
detailed search capabilities from the `spack compiler find` command for the 
`spack external find` command.

After this commit, `spack compiler find` can be replaced with 
`spack external find --tag compiler`, with the exception of mixed toolchains.
2024-05-06 10:33:33 +02:00
Massimiliano Culpo
27aeb6e293
Update vendored archspec to v0.2.4 (#44005) 2024-05-06 10:20:56 +02:00
Harmen Stoppels
715214c1a1
spack env create <env>: dir if dir-like (#44024)
A named env cannot contain `.` and `/`.

So when a user runs `spack env create ./here` do not error but treat it
as `spack env create -d ./here`.

Also fix help string of `spack env create`, which seems to have been
copied from `activate` incorrectly.
2024-05-06 02:00:23 -06:00
dependabot[bot]
b471d62dbd
build(deps): bump black from 24.4.0 to 24.4.2 in /lib/spack/docs (#43878)
Bumps [black](https://github.com/psf/black) from 24.4.0 to 24.4.2.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.4.0...24.4.2)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-06 09:55:43 +02:00
dependabot[bot]
74fe498cb8
build(deps): bump mypy from 1.9.0 to 1.10.0 in /lib/spack/docs (#43834)
Bumps [mypy](https://github.com/python/mypy) from 1.9.0 to 1.10.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/1.9.0...v1.10.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-04 15:48:49 -07:00
Harmen Stoppels
d2ed217796
concretizer args: --fresh-roots == --reuse-deps (#43988)
Since reuse is the default now, `--reuse-deps` can be confusing, as it
technically does not imply roots are fresh.

So add `--fresh-roots`, which is also easier to discover when running
`spack concretize --fre<tab>`
2024-05-03 12:12:36 -07:00
Massimiliano Culpo
89bf1edb6e
Spec.satisfies: fix a bug with concrete spec from JSON (#43968)
Fix a bug triggered by missing a virtual on some transitive edge, in a subdag of a pure build dependency.
2024-05-02 22:16:02 -04:00
Todd Gamblin
cc85dc05b7
docs: re-enable google analytics (#43974)
We recently switched to using the new ReadTheDocs with "addons". That includes its own
analytics, which is nice, but we also want to continue using our GA4 analytics.

Adding GA4 is no longer supported by RTD, so we have to add it manually.

- [x] re-add the gtag to all pages, manually

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-02 21:56:19 -04:00
jdomke
97dc353cb0
libc: detect ARM flavor (#43959)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-05-02 15:59:29 +02:00
Adrien Bernede
a0aa35667c
Ignore external packages when pushing to buildcache automatically (--autopush) (#43930) 2024-05-02 09:50:10 +02:00
John W. Parent
7e8415a3a6
Windows: auto-add WGL/SDK as externals (#43752)
Adds a pre-concretization check for the Windows SDK and WGL (Windows
GL) packages as non-buildable externals.

This is a redo of https://github.com/spack/spack/pull/43459, but makes
sure to modify the configuration scope outside of the bootstrap scope:
whichever is highest-precedence in the user's environment at the time
the concretization runs, which should either be an env scope or the
~ scope.

Adds pytest fixture mocking the check for WGL and WSDK as if they were
present.
2024-05-02 01:05:03 -06:00
Massimiliano Culpo
4e876b4014
Allow more control over which specs are reused (#42782)
This PR gives users finer control over which specs are reused during concretization.

The value of the `concretizer:reuse` config option now can take an object with the following properties:
- `roots`: true if reusing roots, false if reusing just dependencies
- `exclude`: list of constraints used to select reusable specs 
- `include`: list of constraints used to select reusable specs 
- `from`: allows to select the sources of reused specs

### Examples

#### Reuse only specs compiled with GCC
```yaml
concretizer:
  reuse:
    roots: true
    include:
    - "%gcc"
```

#### `openmpi` must be used from externals, and it must be the only external used
```yaml
concretizer:
  reuse:
    roots: true
    from:
    - type: local
      exclude:
      - "openmpi"
    - type: buildcache
      exclude:
      - "openmpi"
    - type: external
      include:
      - "openmpi"
```
2024-05-01 23:05:26 -04:00
Wouter Deconinck
067155cff5
containers: add ubuntu 24.04 (#43881)
* containers: add ubuntu 24.04

* containers: use python3-boto3 pkg instead of pip install
2024-05-01 13:37:13 +02:00
dependabot[bot]
be48f762a9
build(deps): bump pytest from 8.1.1 to 8.2.0 in /lib/spack/docs (#43908)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.1.1 to 8.2.0.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.1.1...8.2.0)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-01 13:29:22 +02:00
Wouter Deconinck
f2d0ba8fcc
PackageStillNeededError: add pkg that needs spec to exception msg (#43845)
* PackageStillNeededError: add pkg that needs spec to exception msg
* PackageStillNeededError: f-string with short fmt and hash
* PackageStillNeededError: split long string
2024-04-30 12:11:47 -07:00
Harmen Stoppels
7f2cedd31f
hack: drop glibc and musl in old concretizer (#43914)
The old concretizer creates a cyclic graph when expanding virtuals for
`iconv`, which is a bug. This hack drops glibc and musl as possible
providers for `iconv` in the old concretizer to work around it.
2024-04-30 13:55:48 +02:00
Harmen Stoppels
3e6e9829da
compiler.py: fix early return (#43898) 2024-04-29 08:53:27 -06:00
Gregory Becker
859745f1a9 Run audits on windows
Add debug log for external detection tests. The debug log
is used to print which test is being executed.

Skip version audit on Windows where appropriate
2024-04-29 14:13:10 +02:00
Massimiliano Culpo
ddabb8b12c
Fix concretization when installing missing compilers (#43876)
Restore the previous behavior when config:install_missing_compilers
is True. The libc of the missing compiler is inferred from the
Python process.
2024-04-29 08:20:33 +02:00
Harmen Stoppels
43f3a35150
gcc: generate spec file and fix external libc default paths after install from cache (#43839)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-04-27 08:49:20 -06:00
Jonathon Anderson
ae9f2d4d40
containers: Add Fedora 40, 39 (#43847) 2024-04-26 20:02:04 -05:00
Massimiliano Culpo
e5edac4d0c
ASP-based solver: update os compatibility for macOS (#43862) 2024-04-26 18:34:46 +02:00
Robert Cohn
1eecbd3208
[intel-oneap-*] no redistribution (#43826) 2024-04-26 12:03:39 +00:00
Massimiliano Culpo
ac9012da0c
spack audit externals: allow selecting platforms and checking extra attributes (#43782) 2024-04-26 12:47:17 +02:00
Harmen Stoppels
d946c37cbb
ldflags=* are compiler flags, not linker flags (#43820)
We run `extend spack_flags_list SPACK_LDFLAGS` for `$mode in ld|ccld`.

That's problematic, cause `ccld` needs `-Wl,--flag` whereas `ld` needs
`--flag` directly. Only `-L` and `-l` are common to compiler & linker.

In all build systems `LDFLAGS` is for the compiler not the linker, cause
any linker flag `-x` can be passed as a compiler flag `-Wl,-x`, and there
are many compiler flags that affect the linker invocation, like `-fopenmp`,
`-fuse-ld=`, `-fsanitize=` etc.

So don't pass `LDFLAGS` to the linker directly.

This way users can set `ldflags: -Wl,--allow-shlib-undefined` in compilers.yaml
to work around an issue where the linker tries to resolve the `libcuda.so.1`
stub lib which cannot be located by design in `cuda`.
2024-04-26 09:19:03 +02:00
Harmen Stoppels
4a40a76291
build_environment.py: expand SPACK_MANAGED_DIRS with realpath (#43844) 2024-04-25 13:33:50 +02:00
Harmen Stoppels
1224a3e8cf
clang.py: detect flang-new (#43815)
If a flang-new exists, which is rather unlikely, it probably means the
user wants it as a fortran compiler.
2024-04-24 19:11:02 +02:00
Peter Scheibel
02cc3ea005
Add new redistribute() directive (#20185)
Some packages can't be redistributed in source or binary form. We need an explicit way to say that in a package.

This adds a `redistribute()` directive so that package authors can write, e.g.:

```python
    redistribute(source=False, binary=False)
```

You can also do this conditionally with `when=`, as with other directives, e.g.:

```python
    # 12.0 and higher are proprietary
    redistribute(source=False, binary=False, when="@12.0:")

    # can't redistribute when we depend on some proprietary dependency
    redistribute(source=False, binary=False, when="^proprietary-dependency")
```


To prevent Spack from adding either their sources or binaries to public mirrors and build caches. You can still unconditionally add things *if* you run either:
* `spack mirror create --private`
* `spack buildcache push --private`

But the default behavior for build caches is not to include non-redistributable packages in either mirrors or build caches.  We have previously done this manually for our public buildcache, but with this we can start maintaining redistributability directly in packages.

Caveats: currently the default for `redistribute()` is `True` for both `source` and `binary`, and you can only set either of them to `False` via this directive.

- [x] add `redistribute()` directive
- [x] add `redistribute_source` and `redistribute_binary` class methods to `PackageBase`
- [x] add `--private` option to `spack mirror`
- [x] add `--private` option to `spack buildcache push`
- [x] test exclusion of packages from source mirror (both as a root and as a dependency)
- [x] test exclusion of packages from binary mirror (both as a root and as a dependency)
2024-04-24 09:41:03 -07:00
John W. Parent
641ab95a31
Revert "Windows: add win-sdk/wgl externals during bootstrapping (#43459)" (#43819)
This reverts commit 9e2558bd56.
2024-04-24 18:24:28 +02:00
Harmen Stoppels
3f1cfdb7d7
libc: from current python process (#43787)
If there's no compiler we currently don't have any external libc for the solver.

This commit adds a fallback on libc from the current Python process, which works if it is dynamically linked.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-04-24 05:10:48 -06:00
Todd Gamblin
aa0825d642
Refactor to improve spec format speed (#43712)
When looking at where we spend our time in solver setup, I noticed a fair bit of time is spent
in `Spec.format()`, and `Spec.format()` is a pretty old, slow, convoluted method.

This PR does a number of things:
- [x] Consolidate most of what was being done manually with a character loop and several
      regexes into a single regex.
- [x] Precompile regexes where we keep them 
- [x] Remove the `transform=` argument to `Spec.format()` which was only used in one 
      place in the code (modules) to uppercase env var names, but added a lot of complexity
- [x] Avoid escaping and colorizing specs unless necessary
- [x] Refactor a lot of the colorization logic to avoid unnecessary object construction
- [x] Add type hints and remove some spots in the code where we were using nonexistent
      arguments to `format()`.
- [x] Add trivial cases to `__str__` in `VariantMap` and `VersionList` to avoid sorting
- [x] Avoid calling `isinstance()` in the main loop of `Spec.format()`
- [x] Don't bother constructing a `string` representation for the result of `_prev_version`
      as it is only used for comparisons.

In my timings (on all the specs formatted in a solve of `hdf5`), this is over 2.67x faster than the 
original `format()`, and it seems to reduce setup time by around a second (for `hdf5`).
2024-04-23 10:52:15 -07:00
Greg Becker
978c20f35a
concretizer: update reuse: default to True (#41302) 2024-04-23 17:42:14 +02:00
Harmen Stoppels
01f61a2eba
Remove import distro from packages and docs (#43772) 2024-04-23 12:47:33 +02:00
Massimiliano Culpo
7d5e27d5e8
Do not detect a compiler without a C compiler (#43778) 2024-04-23 12:20:33 +02:00
Harmen Stoppels
d6baae525f
repo.py: drop deleted packages from provider cache (#43779)
The reverse provider lookup may have stale entries for deleted packages, which used to cause errors. It's hard to invalidate those cache entries, so this commit simply drops entries w/o invalidating the cache.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-04-22 19:03:44 +02:00
Kyle Knoepfel
e1f2612581
Adjust severity of irreversible operations (#43721) 2024-04-22 16:41:53 +02:00
Harmen Stoppels
080fc875eb
compiler.py: reduce verbosity of implicit link dirs parsing (#43777) 2024-04-22 16:07:14 +02:00
Harmen Stoppels
69f417b26a
view: dont warn about externals (#43771)
since it's the status quo on linux after libc as external by default
2024-04-22 16:05:32 +02:00