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Author SHA1 Message Date
Rocco Meli
210b2e8caa MDAnalysis 2.4.3 (#36541) 
* mda 2.4.3

* black

* mda update and reshuffle

* add tidynamics
 2023-03-31 18:47:56 +00:00
John W. Parent
a8e2961010 Allow configurable stage names (#36509) 
Add `config:stage_name` which is a Spec format string that can
customize the names of stages created by Spack. This was primarily
created to allow generating shorter stage names on Windows (along
with `config:build_stage`, this can be used to create stages with
short absolute paths).

By default, this is not set and the prior name stage format is used.

This also removes the username component that is always added to
Stage paths on Windows (if users want to include this, they can
add it to the `build_stage`).
 2023-03-31 11:46:47 -07:00
Alec Scott
a6a364d3b8 py-aioitertools: add v0.11.0 (#36540) 
* py-aioitertools: add v0.11.0

* Update var/spack/repos/builtin/packages/py-aioitertools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-03-31 14:16:12 -04:00
Harmen Stoppels
46bbce1922 compiler wrapper: fix -Xlinker parsing (#35929) 
* compiler wrapper: fix -Xlinker parsing
* handle the case of -rpath without value; avoid that we drop the flag
* also handle the -Xlinker -rpath -Xlinker without further args case...
* fix test
* get rid of global $rp var, reduce branching
 2023-03-31 09:47:24 -07:00
Satish Balay
14465e61ae petsc: builds break with gnu-make-4.4.1 (#35906) 
Use 'make' detected by spack within petsc build
 2023-03-31 09:28:48 -07:00
kwryankrattiger
4064191fbc Ascent: Drop VTK-h dependency for 0.9 (#36458) 
* Ascent: Drop VTK-h dependency for 0.9

* Ascent: Remove duplicate OpenMP constraints

* Ascent: 0.9.0 cannot build with vtk-m@2

* Ascent: Only needs vtkm when using vtkh

* Ascent: Require fides when building with ADIOS2
 2023-03-31 11:24:45 -05:00
renjithravindrankannath
7bb64b526f rocsparse: exclude v5.4 from being patched (#36571) 2023-03-31 18:14:04 +02:00
Cameron Rutherford
4f42092f4f hiop: add v0.7.2 (#36570) 2023-03-31 11:33:26 -04:00
Tristan Carel
3b5b9e8474 steps: add variants gmsh and kokkos (#36543) 2023-03-31 11:27:58 -04:00
Paul Romano
aabd76cb74 OpenMC: add v0.13.3 (#36564) 
* OpenMC: add v0.13.3

* Add missing version in list for py-openmc
 2023-03-31 11:18:26 -04:00
H. Joe Lee
fbde853360 hdf5: add a map variant (#35523) 
* hdf5: add map variant
* hdf5: add mininum version for map variant
* hdf5: fix black error
 2023-03-31 10:48:08 -04:00
Benjamin Meyers
951f691d1b New: py-dalib, py-qdldl, py-qpsolvers; Update: py-ecos, py-scs, py-osqp (#36549) 
* New: py-dalib, py-qdldl, py-qpsolvers; Update: py-ecos, py-scs, py-osqp

* [@spackbot] updating style on behalf of meyersbs

* Update py-qpsolvers homepage

* Add when clause to py-future
 2023-03-31 09:34:02 -05:00
Benjamin Meyers
27978fd355 New package py-json2html (#36111) 
* New package py-json2html

* Remove deprecated python deps
 2023-03-31 09:32:31 -05:00
John W. Parent
349b5d982b Add latet CMake release (#36119) 2023-03-31 08:28:49 -04:00
Ashwin Kumar Karnad
c2c56c1ca1 octopus: Add sparskit variant (#36494) 
Co-authored-by: Hans Fangohr <fangohr@users.noreply.github.com>
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2023-03-31 08:18:53 -04:00
Weston Ortiz
7e06b5bc88 goma: add additional versions up to 7.4.3 (#36561) 2023-03-31 06:49:12 -04:00
Miroslav Stoyanov
17cec3b101 Deprecate old tasmanian (#36534) 
* deprecated old versions and deps
* syntax fix

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2023-03-31 06:48:48 -04:00
Harmen Stoppels
b0e7b8c794 typehint a few globals (#36544) 2023-03-31 08:32:56 +02:00
Alec Scott
98ac3acc92 py-aiobotocore: add v2.5.0 (#36538) 
* py-aiobotocore: add v2.5.0

* Fix dependencies for v2.5.0

* Add py-botocore@1.29.76
 2023-03-30 20:52:37 -05:00
Benjamin Meyers
7d66c3b5d1 New package py-coclust (#36548) 
* New package py-coclust

* [@spackbot] updating style on behalf of meyersbs
 2023-03-30 20:41:15 -05:00
Benjamin Meyers
ae9a65ae56 New package py-soyclustering (#36550) 
* New package py-soyclustering

* [@spackbot] updating style on behalf of meyersbs
 2023-03-30 20:33:33 -05:00
Michael Kuhn
996442ea9b py-h5py: add 3.8.0 (#35960) 2023-03-30 20:20:55 -05:00
marcosmazz
bd20b7b8b7 QE v7.1 add post-processing tools installation (#36484) 
* QE v7.1 add post-processing tools installation

Quantum-Espersso@7.1 ships with an incoplete CMakeLists.txt that prevents the installation of post-processing tools.
Added patches, is fixed in two different commits in upstream.

* fixed style

* removed spaces

* added MR references
 2023-03-30 16:28:14 -07:00
Scott Wittenburg
08426ec492 gitlab ci: request more memory for publish job (#36560) 2023-03-31 00:19:59 +02:00
Adam J. Stewart
f863859bde py-lightning: add v2.0.1 (#36565) 2023-03-30 17:57:31 -04:00
Ashwin Kumar Karnad
07559d778e octopus: Add berkeleygw variant (#36495) 
* octopus: Add berkeleygw variant
* octopus: style fix
 2023-03-30 14:57:05 -07:00
Edoardo Aprà
33833a4f32 nwche: add v7.2.0 (#36193) 
* removed env variables now default. added spec fftw3. removed obsolete version 7.0.0

* tweak NWCHEM_MODULES based on version
 2023-03-30 22:15:56 +02:00
Adam J. Stewart
e544bb6271 py-scipy: py-pythan is only a build dep (#36528) 2023-03-30 16:13:17 -04:00
Massimiliano Culpo
e1a104e3a2 Add type-hints to spack.bootstrap (#36491) 2023-03-30 22:12:18 +02:00
Alex Richert
f5624f096c perl: add patching to allow building with intel@19.1.3 (#35666) 2023-03-30 13:07:33 -04:00
Cyrus Harrison
d82fc158ca add conduit 0.8.7 release (#36357) 2023-03-30 12:40:35 -04:00
Ashwin Kumar Karnad
709c5c4844 octopus: add etsf-io variant (#36490) 2023-03-30 18:15:04 +02:00
Ashwin Kumar Karnad
e356390575 octopus: Add NFFT variant (#36489) 2023-03-30 18:04:29 +02:00
Ashwin Kumar Karnad
906a8c56af octopus+cgal: requires boost: add --with-boost=spec["boost"].prefix (#36472) 2023-03-30 17:37:11 +02:00
Adam J. Stewart
6c5d3299fe Feature Request template: remove spack version requirement (#36503) 2023-03-30 16:39:36 +02:00
Richard Berger
fefa4b8cc4 r3d: add pic variant (#36476) 2023-03-30 16:37:35 +02:00
Erik Heeren
2ca471745c easyloggingpp: new package (#36487) 2023-03-30 16:35:33 +02:00
Alec Scott
3756d5761b poke: add v3.0 (#36479) 2023-03-30 16:32:05 +02:00
Nathalie Furmento
0c05f2bc21 Add StarPU latest release 1.4.0 (#36518) 
* starpu: add v1.4.0
 2023-03-30 09:59:00 -04:00
Harmen Stoppels
054cbe84de python: sequential make install :( (#35557) 2023-03-30 07:16:11 -04:00
Eric Brugger
a185343493 VisIt: Update to VisIt 3.3.2. (#36510) 2023-03-30 03:34:20 -04:00
Massimiliano Culpo
16404034dc Fix a couple of minor bugs with ASP weights (#36522) 
Reorder versions so that deprecated ones are last. 

Account for default not used when the variant exists.
 2023-03-30 01:08:57 -04:00
Sergey Kosukhin
516a023173 py-findlibs: add patch to support paths under lib64 (#36524) 2023-03-30 01:04:15 -04:00
Jack Morrison
f8064cd744 * Add new linux-headers version 6.2.8. (#36474) 
* Add new libfabric versions 1.17.1, 1.17.0, 1.16.0, 1.15.2.
* Add libfabric dependency on numactl and linux-headers when building
  with OPX provider support.
* Set libfabric flag_handler to pass compiler flags as arguments to
  configure.
 2023-03-29 21:34:33 -05:00
Adam J. Stewart
781c87840d py-kornia: add v0.6.11 (#36512) 2023-03-29 14:33:23 -05:00
Adam J. Stewart
b9a3254b66 py-black: add v23.3.0 (#36513) 2023-03-29 14:33:08 -05:00
Adam J. Stewart
20d2e6a9fd py-pyproj: add v3.5.0 (#36504) 
* py-pyproj: add v3.5.0
* PROJ: add v9, fix datum grid installation
* [@spackbot] updating style on behalf of adamjstewart

---------

Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
 2023-03-29 12:30:39 -07:00
snehring
b6390e335c gmap-gsnap: Adding new version and perl run dep (#36508) 2023-03-29 12:28:17 -07:00
Ivan Maidanski
3e09f04241 libatomic_ops: add v7.8.0 (#36515) 2023-03-29 12:23:16 -07:00
Harmen Stoppels
67c4ada08b py-cython: set upperbound for backported patch (#36525) 2023-03-29 12:43:40 -04:00