Commit Graph

286 Commits

Author SHA1 Message Date
becker33
f962aba6ce Allow packages to control handling of compiler flags (#4421)
* Initial work on flag trapping using functions called <flag>_handler and default_flag_handler

* Update packages so they do not obliterate flags

* Added append to EnvironmentModifications class

* changed EnvironmentModifications to have append_flags method

* changed flag_val to be a tuple

* Increased test coverage

* added documentation of flag handling
2017-07-19 20:12:00 -07:00
George Hartzell
ff906faf9a Typo: submdoules -> submodules (#4716) 2017-07-12 07:48:31 +02:00
Adam J. Stewart
9933d759ac Update hdfgroup packages to new URL structure (#4643)
* Update hdfgroup packages to new URL structure

* Update docs now that HDF5 URL isn't that complicated
2017-06-29 21:38:47 -05:00
EmreAtes
898c7f8838 add mpi to providers to remove virtual package error (#4608) 2017-06-28 12:24:29 -05:00
Adam J. Stewart
e5ce7b1639 Allow arbitrary Prefix attributes (#4591)
* Allow arbitrary Prefix attributes
* Test attribute type as well

* Flake8 fixes

* Remove __new__ method

* Fewer uses of join_path in the docs
2017-06-24 22:39:31 -07:00
Todd Gamblin
cac4362f64 Make LICENSE recognizable by GitHub. (#4598) 2017-06-24 22:22:55 -07:00
becker33
541496dfe1 System config (#4518)
* Code changes to enable system config scope in /etc

Files will go in either /etc/spack or /etc/spack/<platform>
Required minor changes to conftest.

* Updated documentation to match new config scope
2017-06-16 12:31:56 -07:00
Adam J. Stewart
218992862c Move gpg section of docs to Getting Started (#4446) 2017-06-09 12:27:29 -05:00
Stas Sergienko
8018f6cdf6 Fixed duplicated spec: nag@6.1 line in getting started guide (#4445) 2017-06-07 11:50:56 -05:00
Adam J. Stewart
f9ac965fb9 Document known issue with R concretization (#4313) 2017-05-27 12:51:03 -05:00
Ben Boeckel
f38d250e50 gpg: add 'spack gpg subcommand (#3845)
- Add a `spack gpg` subcommand in anticipation of signed binaries.
- GPG keys are stored in var/spack/gpg, and the spack gpg command manages them.
- Docs are included on the command.
2017-05-26 10:31:04 -07:00
Todd Gamblin
32c570913d Move doc dependencies to requirements.txt for readthedocs (#4280)
* Move doc dependencies to requirements.txt for readthedocs

* Move sphinx to doc requirements.
2017-05-17 20:45:03 -05:00
Adam J. Stewart
cafc3cc3ca Sphinx no longer supports Python 2.6 (#4266)
* Sphinx no longer supports Python 2.6

* Update vendored sphinxcontrib.programoutput from 0.9.0 to 0.10.0

* Documentation cannot be built in parallel

* Let Travis install programoutput for us

* Remove vendored sphinxcontrib-programoutput

Recent updates to the sphinx package prevent the vendored version
from being found in sys.path. We don't vendor sphinx, so it doesn't
make sense to vendor sphinxcontrib-programoutput either.
2017-05-17 11:36:02 -05:00
Adam J. Stewart
b630c06773 Sphinx no longer ignores first argument (#4243)
* Sphinx no longer ignores first argument
* Duplicate first argument for maximum compatibility
2017-05-16 14:24:35 -07:00
Adam J. Stewart
73896e9481 Remind developers to update tab completion script (#4148) 2017-05-05 18:52:28 -05:00
Adam J. Stewart
9b49dfdc2a Fix typos in Basic Installation Tutorial (#4127) 2017-05-05 13:05:56 -05:00
Adam J. Stewart
1336630f17 Add link to spack view docs in command index (#4082) 2017-05-02 11:20:45 -05:00
Adam J. Stewart
2511520b32 Add a WafPackage base class (#3975)
* Add a WafPackage base class

* Correct comment in docstring

* Be more specific about the Python versions supported
2017-05-01 08:00:09 -07:00
Adam J. Stewart
eaa50d3b7c Add API Docs for lib/spack/llnl (#3982)
* Add API Docs for lib/spack/llnl
* Clean up after previous builds
* Better fix for purging API docs
2017-04-25 22:24:02 -07:00
Todd Gamblin
99a8297add Rename tutorial_sc16.rst to tutorial.rst (#3974)
- make the name more generic for posterity.
2017-04-24 15:25:41 -07:00
Christoph Junghans
0b002c2911 fetch git submodules recursively (#3779)
* fetch git submodules recursively

This is useful if the submodules have submodules themselves. On
the other hand doing a recursive update doesn't hurt if there
is only one level.

* fetch submodules with depth=1 as well (fix #2190)

* use git submodule with depth only for git>=1.8.4
2017-04-21 21:59:30 -07:00
Adam J. Stewart
21e4a81de0 Add Napoleon extension to support Google docstrings (#3920) 2017-04-20 08:32:21 -07:00
Adam J. Stewart
bd1beedaf5 Allow users to set parallel jobs in config.yaml (#3812)
* Allow users to set parallel jobs in config.yaml

* Undo change from endash to emdash

* Remove parallel config, rename jobs to build_jobs
2017-04-15 08:31:00 -07:00
Adam J. Stewart
e12e9996e4 Document commands that no longer work (#3781) 2017-04-12 10:46:00 -05:00
Denis Davydov
c9da92dc97 doc: start with known issues section (#3722) 2017-04-10 08:20:57 -05:00
Adam J. Stewart
8e4ada5e99 Make it more clear that version ranges are inclusive (#3759) 2017-04-10 07:25:48 -05:00
Max Katz
a526bcaf11 Correct uninstall -d to uninstall -R in tutorial (#3740)
-d was changed to -R as of PR #1917
2017-04-06 15:44:43 -05:00
Todd Gamblin
715ac8b7e6 Update copyright on the docs. (#3718) 2017-04-05 18:34:17 -07:00
scheibelp
9e50d16f13 Merge pull request #2789 from paulhopkins/features/allow_package_installation_directory_to_be_configured
Allow installation directory layout to be configured
2017-04-05 10:45:11 -07:00
Paul Hopkins
95c3cff6be Allow installation directory layout to be configured using either hash
length parameter or spec formatting.
2017-04-05 12:08:56 +01:00
Justin Cook
508c96d046 Update getting_started.rst (#3685)
Fixed typo referring to .bashrc file
2017-04-04 06:50:44 -05:00
Adam J. Stewart
50df071ad9 Overhaul Spack's URL parsing (#2972)
* Remove fake URLs from Spack

* Ignore long lines for URLs that start with ftp:

* Preliminary changes to version regexes

* New redesign of version regexes

* Allow letters in version-only

* Fix detection of versions that end in Final

* Rearrange a few regexes and add examples

* Add tests for common download repositories

* Add test cases for common tarball naming schemes

* Finalize version regexes

* spack url test -> spack url summary

* Clean up comments

* Rearrange suffix checks

* Use query strings for name detection

* Remove no longer necessary url_for_version functions

* Strip off extraneous information after package name

* Add one more test

* Dot in square brackets does not need to be escaped

* Move renaming outside of parse_name_offset

* Fix versions for a couple more packages

* Fix flake8 and doc tests

* Correctly parse Python, Lua, and Bio++ package names

* Use effective URLs for mfem

* Add checksummed version to mitos

* Remove url_for_version from STAR-CCM+ package

* Revert changes to version numbers with underscores and dashes

* Fix name detection for tbb

* Correctly parse Ruby gems

* Reverted mfem back to shortened URLs.

* Updated instructions for better security

* Remove preferred=True from newest version

* Add tests for new `spack url list` flags

* Add tests for strip_name_suffixes

* Add unit tests for version separators

* Fix bugs related to parseable name but in parseable version

* Remove dead code, update docstring

* Ignore 'binary' at end of version string

* Remove platform from version

* Flip libedit version numbers

* Re-support weird NCO alpha/beta versions

* Rebase and remove one new fake URL

* Add / to beginning of regex to avoid picking up similarly named packages

* Ignore weird tar versions

* Fix bug in url parse --spider when no versions found

* Less strict version matching for spack versions

* Don't rename Python packages

* Be a little more selective, version must begin with a digit

* Re-add fake URLs

* Fix up several other packages

* Ignore more file endings

* Add parsing support for Miniconda

* Update tab completion

* XFAILS are now PASSES for 2 web tests
2017-04-03 15:34:16 -07:00
Massimiliano Culpo
ffef681377 new directive: conflicts() (#3125)
* Add conflicts(<spec>) directive
* openblas: added conflicts for intel@16 refs #3119
* added brief docs and unit tests
2017-04-02 11:40:09 -07:00
Todd Gamblin
0e785e0500 Add epigraph in docs. 2017-04-01 15:32:06 -07:00
Todd Gamblin
a8bcc23fe7 Spack works with Python 3
- Update version guard in spack script to allow python 3
- Update min required version in the docs
2017-03-31 13:40:41 -07:00
Todd Gamblin
0331b08c64 Update externals to work with Python 3
- Update YAML version to support Python 3
- Python 3 support for ordereddict backport
- Exclude Python3 YAML from version tests.
- Vendor six into Spack.
- Make Python version-check tests work with Python 3
- Add ability to add version check exceptions with '# nopyqver' line
  comments.
2017-03-31 13:40:41 -07:00
Milton Woods
9e43ff821c Extendable Perl (#3614)
* perl: make extendable and add Module::Build package
* perl: allow 'spack create' to identify perl packages from their contents
* perl-module-build: fix indenting of package docstring
* perl: split install() method for extensions into phases
* perl: auto-detect build method (Makefile.PL vs Build.PL) and define a 'check' method
* PerlPackage: use import statements similar to those in AutotoolsPackage
* PerlModule: fix detection of Build.PL
* PerlPackageTemplate: remove extraneous lines to avoid flake8 warnings
* PerlPackageTemplate: split into separate templates for Makefile.PL and Build.PL
* PerlPackage: add cross-references to docstrings
* AutotoolsPackage: fix ambiguous cross-references to avoid errors in doc tests
* PerlbuildPackageTemplate: depend on perl-module-build if Build.PL exists
2017-03-30 16:38:58 -07:00
Adam J. Stewart
10b767b93f Don't use @system in packages.yaml (#3472) 2017-03-17 07:55:55 -07:00
Adam J. Stewart
dca4d2b15e Consistent docs and usage of env mod methods (#3351) 2017-03-14 22:26:44 -07:00
Adam J. Stewart
6d3f649382 Fix readline support in spack python (#3132)
* Fix readline support in `spack python`
* Add documentation on `spack python`
* Add unit tests for `spack python`
2017-02-17 15:58:06 -08:00
Adam J. Stewart
e492aff4f7 More consistent yes/no prompts (#3174)
* More consistent yes/no prompts
* Add ==> prefix to yes/no and number prompts
2017-02-17 13:45:02 -08:00
Adam J. Stewart
a9cf99b3e2 Fix typos in External Packages documentation (#3168) 2017-02-17 11:49:55 -08:00
Henrik Bengtsson
6e729bc333 DOCS: Examplify what file types are automatically extracted (#2955) 2017-01-31 08:26:19 -08:00
Adam J. Stewart
123f057089 Refactor Spack's URL parsing commands (#2938)
* Replace `spack urls` and `spack url-parse` with `spack url`
* Allow spack url list to only list incorrect parsings
* Add spack url test reporting
* Add unit tests for new URL commands
2017-01-31 11:14:52 -05:00
Todd Gamblin
ffb8aaa3f3 Packaging docs for MPI (#2838)
* Add MPI docs to packaging guide and simplify packaging guide TOC a bit.
2017-01-26 02:29:31 -08:00
Massimiliano Culpo
fc866ae0fe build systems: simpler, clearer decorators: run_after, run_before (#2860)
* PackageMeta: `run_before` is an alias of `precondition`, `run_after` an alias of `sanity_check`

* PackageMeta: removed `precondition` and `sanity_check`

* PackageMeta: decorators are now free-standing

* package: modified/added docstrings. Fixed the semantics of `on_package_attributes`.

* package: added unit test assertion as side effects of install

* build_systems: factored build-time test running into base class

* r: updated decorators in package.py

* docs: updated decorator names
2017-01-25 08:57:01 -07:00
Adam J. Stewart
7d3da2ebdc Grammar and broken link fixes in modules tutorial (#2912) 2017-01-24 10:25:44 -07:00
Massimiliano Culpo
a8e1d78881 documentation: build-system phases + build-time tests (#2780)
* documentation: reworked packaging guide to add build-system phases

* documentation: improvements to AutotoolsPackage autodocs

* build_systems: updated autodocs

* run-tests: added a few information on how to run tests fixes #2606 fixes#2605

* documentation: fixed items brought up by @davydden

    * typos in docs
    * consistent use of 'build system' (i.e. removed 'build-system' from docs)
    * added a note on possible default implementations for build-time tests

* documentation: fixed items brought up by @citibeth

    * added note to explain the difference between build system and language used in a package
    * capitalized bullet items
    * added link to API docs

* documentation: fixed multiple cross-references after rebase

* documentation: fixed minor issues raised by @tgamblin

* documentation: added entry in table for the `PythonPackage` class

* docs: fixed issues brought up by @citybeth in the second review
2017-01-23 13:55:39 -08:00
Adam J. Stewart
dae353374e Simplify unit tests listed in Contribution Guide (#2904)
* Simplify unit tests listed in Contribution Guide

* Use long name for option flags
2017-01-23 09:48:49 -08:00
Adam J. Stewart
02f92fc7f8 Massive conversion from Package to AutotoolsPackage (#2845)
* Massive conversion from Package to AutotoolsPackage

* Forgot to convert p4est to AutotoolsPackage

* Fix typo

* Fix broken link in docs
2017-01-18 10:34:09 -08:00