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Author SHA1 Message Date
Adam J. Stewart
ec87924039 MACOSX_DEPLOYMENT_TARGET: MAJOR.MINOR (#31811) 2022-07-30 02:12:02 +00:00
Sam Reeve
d2ad58c476 cabana: new version 0.5 (#31807) 2022-07-29 22:02:00 +00:00
eugeneswalker
d360551c16 e4s oneapi ci: uncomment pdt (#31803) 
* e4s oneapi ci: uncomment pdt

* load oneapi compiler module before executing `spack ci rebuild`
 2022-07-29 20:57:25 +00:00
Adam J. Stewart
9d62faa239 py-segmentation-models-pytorch: add v0.3.0 (#31806) 2022-07-29 14:05:44 -06:00
iarspider
882a7455ea Add checksum for numba 0.55.2 and 0.56, py-llvmlite 0.39.0 (#31802) 
* Add checksum for numba 0.55.2 and 0.56

* Add checksum for py-llvmlite 0.39.0

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-07-29 19:21:02 +00:00
eugeneswalker
9e683126f0 e4s ci: add tasmanian +rocm (#31606) 2022-07-29 11:43:34 -07:00
Chuck Atkins
57af891cb1 OpenGL restructure (#31748) 
* OpenGL: Restructures the OpenGL packages

This provides concrete glx and osmesa packages which delegate to
virtual libglx and libosmesa packages provided by mesa. This was
necessary because GLX and OSMesa both provide gl implementations but
with mesa providing the girtual gl package there was no way to properly
distinguish which of the two opengl implementations was beiing requested
when querying the spec['gl'] dependency.  This additional level of
indirection allows for that.

* OpenGL: Adjust downstream dependents of OpenGL for the restructure

This implements the necessary fixes in the packages that depend on
OpenGL to work with the restructuring.  This also attempts to create a
consistent variant for specifying glx or osmesa.
 2022-07-29 12:04:42 -06:00
eugeneswalker
70c849f76b e4s oneapi ci: uncomment parallel-netcdf (#31804) 2022-07-29 17:39:51 +00:00
Seth R. Johnson
e35b69ca57 vdt: add missing python dependency (#31795) 
* vdt: add missing python dependency

* vdt: fix dependency and add explicit exe path
 2022-07-29 09:27:19 -07:00
Wouter Deconinck
9d67d1e034 gaudi: new version 36.6 (#31799) 
No build system changes. Changelog at https://gitlab.cern.ch/gaudi/Gaudi/-/tags/v36r6, comparison at https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v36r5...v36r6
 2022-07-29 09:01:29 -07:00
Seth R. Johnson
a9b2bd5edc iwyu: new version 0.18 (#31798) 2022-07-29 08:57:59 -07:00
eugeneswalker
ec8c8e8aa8 e4s ci: add oneapi stack (#31781) 
* e4s ci: add oneapi stack

* shorten padded_length to 256

* comment out pdt and add failure note
 2022-07-29 03:32:41 +00:00
Scott Wittenburg
4f57430ef3 Deprecate visit 3.3.0 because it is broken (#31790) 2022-07-28 17:36:49 -07:00
Tim Haines
dd54690097 Dyninst: add version 12.2.0 (#31789) 2022-07-28 18:21:45 -06:00
Glenn Johnson
1cb6836614 new package: r-signac (#31703) 
Also includes new package depdendency for r-rcpproll.
 2022-07-28 15:14:45 -07:00
Evgeny Posenitskiy
519e7e0bb0 New package: trexio (#31769) 
* [WIP] first working Spack spec for TREXIO

* add patch to prepend -lhdf5_hl to LIBS

* Fix spack stype issues

* trexio: Fix hashes and hdf5 variant build

* trexio: Remove import from Spack

* trexio: Fix the isort error

* Apply suggestions from code review

By @tldahlgren

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-07-28 15:05:28 -07:00
snehring
bc555fd148 sentieon-genomics: update version to 202112.05 (#31788) 2022-07-28 15:03:40 -07:00
Harmen Stoppels
e4f0f3582e environment.py: only install root specs explicitly (#31645) 2022-07-28 12:16:35 -07:00
Sam Reeve
e8cce0f7cb Cabana: add test variants (#31776) 
* Simplify Cabana build flags
* Add unit tests, examples, and performance options
 2022-07-28 11:21:53 -07:00
Manuela Kuhn
fc4d74b132 py-rsatoolbox: add 0.0.4 (#31785) 2022-07-28 09:59:34 -07:00
Brent Huisman
9ec05f045f New version of Arbor package (#31660) 2022-07-28 13:11:51 +02:00
Harmen Stoppels
09a945d924 gcc: fix unstable patch urls (#31784) 
the patch urls dynamically generate a diff, which includes metadata
about the git version used, meaning they are not content-addressable.

instead ship the patches with spack.
 2022-07-28 11:49:56 +02:00
Filippo Spiga
9ed2d07d68 Adding NVIDIA HPC SDK 22.7 (#31770) 2022-07-28 03:25:58 -06:00
Stephen Sachs
584cc47fb3 Fix parsing of clean_url (#31783) 
In #31618 the idea was to determine the file extension heuristically by dropping query params etc from a url and then consider it as a file path. That broke for URLs that only have query params like http://example.com/?patch=x as it would result in empty string as basename. This PR reverts to the old behavior of saving files as ?patch=x in that case.

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-07-28 09:24:19 +00:00
Erik Schnetter
2dd4795f56 mpitrampoline: New version 5.0.1 (#31772) 2022-07-28 02:33:45 -06:00
AMD Toolchain Support
6c0ca932aa Adding Flamemaster product (#31126) 
* Adding Flamemaster product

About FlameMaster: Flamemaster is an open source C++ program package for 0D
combustion and 1D laminar flame calculations.

* Addressed review comments and style tests errors

* Addressed style tests errors

* Incorporated spack style of coding

* Fixed following spack style error

[E228] missing whitespace around modulo operator

* Update package.py

addressing style issues

* Update package.py

* Changes to maintainers entry
 2022-07-27 15:44:27 -07:00
eugeneswalker
5f845f3f31 e4s ci: add slate +rocm (#31602) 2022-07-27 15:36:59 -07:00
Erik Schnetter
b86f8f41e8 c-blosc2: New version 2.2.0 (#31577) 2022-07-27 15:06:49 -07:00
Sam Reeve
180fc7cdf1 New ExaCA package (#31777) 2022-07-27 14:54:57 -07:00
David Boehme
075dd64883 Add Caliper v2.8.0 and rocm support (#31632) 
* Add Caliper v2.8.0

* Add conflict for +rocm+cuda
 2022-07-27 15:38:54 -06:00
Thomas Madlener
5bd44a795c lcio, podio, edm4hep: Add latest versions (#31749) 
* lcio: add latest version

* edm4hep: Add latest versions

* podio: Add latest versions
 2022-07-27 14:13:47 -07:00
Andrew-Dunning-NNL
5505c443bf ZSH: add lmod and local etc variants (#29651) 
* zsh: add lmod and local etc support

* zsh: fix indentation
 2022-07-27 14:06:07 -07:00
Eric Brugger
71657fffbd VisIt: Update to VisIt 3.3.0. (#31654) 2022-07-27 13:46:04 -07:00
kwryankrattiger
a3f8dc1874 WarpX: Add sensei insitu variant (#31542) 2022-07-27 13:17:44 -06:00
Valentin Volkl
afc044cbad dd4hep: add v1.21 (#31705) 2022-07-27 10:27:21 -07:00
Valentin Volkl
850b295ec5 herwig3, thepeg: correct lhapdfsets dependency, specify boost libs (#31744) 
* herwig3: change lhapdfsets dependency type to build

These data sets are needed for a check during build, but due to the difficulty of versioning the datasets it is preferred not to keep the them in the run environment.

* herwig3: explicitly state needed boost libs

* thepeg: explicitly state needed boost libs

* style

* stylestyle
 2022-07-27 10:23:03 -07:00
Pitamila
56ab4c9820 py-scipy: -fPIC appending trouble with gcc@10: (#31698) 
`-fPIC` mandatory option squeezed by error, the
NPY_DISTUTILS_APPEND_FLAGS appears handy

Co-authored-by: duperrayp <duperrayp@u-un00s16835>
 2022-07-27 10:20:49 -07:00
wspear
02151565e9 Tau must get GCC path from environment on Cray (#31751) 
* Tau must get GCC path from environment on Cray

self.compiler doesn't provide the path to the gcc compiler when using cray cc and the spack internal compiler overrides the location in PATH. If possible get the location from the GCC_PATH variable instead.

* Fix flake8 issues

* Update package.py
 2022-07-27 10:04:06 -07:00
Jonathan R. Madsen
3db87f207e Update omnitrace package with v1.3.0 (#31754) 2022-07-27 10:01:30 -07:00
Adam J. Stewart
fdd914c990 py-sphinx: add v5.1.1 (#31756) 2022-07-27 09:58:15 -07:00
Melven Roehrig-Zoellner
3d9b143296 tixi: new versions (#31761) 2022-07-27 09:51:21 -07:00
Melven Roehrig-Zoellner
179afcac4e valgrind: new version (#31762) 2022-07-27 09:48:55 -07:00
Melven Roehrig-Zoellner
1ab7f65920 itensor: new version, restrict hdf5 to :1.10 (#31764) 2022-07-27 09:44:38 -07:00
Harmen Stoppels
ade7bcd514 curl: 7.84.0 (#31725) 2022-07-26 20:37:49 -06:00
eugeneswalker
5b4c076ddb cabana: add cajita variant (#31753) 
* cabana: add cajita variant

* Update var/spack/repos/builtin/packages/cabana/package.py

Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com>

* cabana: cannot build +cajita ~mpi

Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com>
 2022-07-26 17:33:15 -07:00
eugeneswalker
b38a814dc9 e4s ci stack: add spec: hdf5-vol-async (#31747) 
* e4s ci stack: add spec: hdf5-vol-async

* hdf5-vol-async: add e4s tag
 2022-07-26 16:21:56 -06:00
eugeneswalker
3b692875d8 mpich@4.0.2 %oneapi: patch config.rpath (#31740) 2022-07-26 15:41:42 -06:00
Harmen Stoppels
1319e2d261 openmpi: +pmi implies schedulers=slurm (#31722) 2022-07-26 14:04:55 -07:00
Harmen Stoppels
cffdd86d11 libjwt: new versions, missing dep, disable examples (#31723) 2022-07-26 14:04:27 -07:00
Harmen Stoppels
43d53a032a jansson: new version, disable docs (#31724) 
We don't have the build deps for the docs, so disable for now.
 2022-07-26 14:04:11 -07:00