Commit Graph

16033 Commits

Author SHA1 Message Date
Chris Richardson
51a0228aed
Fenicsx packages: updates for 0.1.0 releases (#23836) 2021-05-24 15:57:04 -07:00
Desmond Orton
b7bcd31d9b
raxml-ng update to version 1.0.2 (#23764)
* Package update to version 1.0.2

* switched submodule boolean to string

* switched from string to bools

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-05-24 13:54:31 -05:00
Seth R. Johnson
d46e49ef7a
SuperLU: add v5.2.2 and cmake tweaks (#23863)
- Changed to cmake package with backward compatibility with older
  makefile
- Removed unused cmake variable 'blas_blas_libs'
- Added new version 5.2.2 which change to external blas variable
- Remove unused tcsh dependency
- Change URL to use git repository for current and future versions
- Add older 4.2 version
- Add conflict for older versions with apple-clang
2021-05-24 13:04:21 +02:00
Andreas Baumbach
b7d0b3ea75
gdk-pixbuf: restrict patch application to meson packages (#23838) 2021-05-24 09:36:12 +02:00
Andreas Baumbach
4153c2e319
libedit: add missing pkgconfig dependency (#23839) 2021-05-24 09:35:24 +02:00
Andreas Baumbach
7f56394af9
ncdu: add v1.15.1 (#23840) 2021-05-24 09:34:45 +02:00
Valentin Volkl
b6416376db
alpaka: add new package (#23576) 2021-05-24 09:28:49 +02:00
Hang Yan
e952aa890e
chapel: add versions up to 1.24.1 (#23365) 2021-05-24 09:27:42 +02:00
Robert Mijakovic
9a185b1d0b
ucx: add v1.10.1 (#23858)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-24 09:16:08 +02:00
Filippo Spiga
b793422e12
CUDA: add v11.3.1 (#23864) 2021-05-24 08:48:44 +02:00
Valentin Volkl
27e9f02d32
chaplin: add new package (#23866) 2021-05-24 08:47:52 +02:00
Vanessasaurus
ec00d68ba1
updating debugedit to be built from its production repository (#23851)
Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-05-22 21:27:32 -07:00
Drew Whitehouse
0fd94d4486
new package for openvdb (#23581) 2021-05-22 23:05:10 +02:00
Olivier Cessenat
fb156ae4bc
New package: sparskit (#23848) 2021-05-22 16:25:28 -04:00
Valentin Volkl
4e6a6e4f27
py-kubernetes: add new package (#23843)
* py-kubernetes: add new package

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-kubernetes: remove alpha/beta versions, fix dependency types

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-05-22 18:41:58 +00:00
Glenn Johnson
1000deb5f9
Update abinit package (#23670)
This PR updates the abinit package. The underlying build system has
several changes from previous versions, which are reflected in the
package recipe.

- added version 9.4.2
- removed commented out code
- add new libxml2 variant, with dependency and conflicts
- add dependency on atompaw
- depend on fftw-api when ~openmp
  This allows other fftw implementations to be used. This PR adds MKL.
- depend on netcdf explicitly
- remove hdf5 variant as hdf5 is required
- only use wannier90 if +mpi as the wannier90 spack package is MPI only
- allow newer versions of libxc for abinit 9
- split configure options for versions before and after abinit 9
- always use MPI compiler wrappers
- add patch to remove march settings for version 9
- Set conflict for fftw~openmp if abinit+openmp
  This allows the virtual fftw-api to be used for the dependency. If fftw
  is the fftw-api provider then bail if fftw~openmp is set when
  abinit+openmp is used.
- Set conflicts for +openmp and mkl
- Be explicit about +mkl for intel-parallel-studio
- Add TODO entry for switching conflicts/depends_on logic
2021-05-22 15:35:58 +02:00
Richarda Butler
cd61b2352d
Slepc: Add E4S testsuite smoke test (#21600) 2021-05-21 15:07:21 -07:00
Dan Bonachea
21fd449a03
upcxx: Install the example files (#23832)
This installs the example source files into $prefix/example, for use by the E4S Testsuite and other end users.

Also fixes a harmless copy/paste error.
2021-05-21 11:51:46 -07:00
Mansour Moufid
f8c2e1fc97
libffi: set target triplet to aarch64-apple-darwin on Mac M1. (#23750) 2021-05-21 19:17:58 +02:00
Sebastian Schmitt
6b1849b663
Update pylint to 2.8.2 (#23446)
* Update pylint to 2.8.2

* Update var/spack/repos/builtin/packages/py-pylint/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Address comments

* Update

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-05-21 12:13:33 -05:00
Andreas Baumbach
4d9607857b
py-notebook: add older versions (#23720)
Change-Id: I34d1e14c071f91d9a451740abcbcc31701a47830
2021-05-21 16:36:00 +00:00
Andreas Baumbach
38fe1c55b5
py-lazy-object-proxy: add missing py-setuptools-scm dependency (#23842)
Change-Id: I76392841a9973aa7b5ec347b0405a78635989a79
2021-05-21 11:23:16 -05:00
Andreas Baumbach
d25026677d
New package: py-pybind11-stubgen (#23732)
* New package: py-pybind11-stubgen

Change-Id: I865b92e08ecefa6eb1327ee0166544fd4ae22953

* fixup

Change-Id: I6030cebecce229d02ab1a20fe6fa501eec22b804
2021-05-21 11:17:12 -05:00
Anton Kozhevnikov
a586fa6dd3
sirius: update to the latest version (#23835) 2021-05-21 15:04:35 +00:00
iarspider
9c179c7d0b
Add new versions of giflib (#23588)
giflib 5.20+ no longer uses autotools

Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2021-05-21 07:19:22 -06:00
Hang Yan
e42b27de7e
thrust: update repo and add new versions (#23364) 2021-05-21 09:50:33 +02:00
Hang Yan
586c08fb86
cub: update repo and add new versions (#23363) 2021-05-21 09:49:37 +02:00
Glenn Johnson
71b9e67b3c
Modification to R environment (#23623)
* Modification to R environment

This PR modifies how the R environmnet is presented, and fixes
installing the standalone Rmath library.

- The Rmath build and install methods are combined into one
- Set parallel=False when installing Rmath
- remove the run environment that set up variables for libraries and
  headers that are not really needed, and pollute the environment.

* Add setup_run_environment back

- Add back the setup_run_environment with LD_LIBRARY_PATH and
  PKG_CONFIG_PATH.
- Adjust documentation to reflect the current code.
2021-05-21 09:34:15 +02:00
Olivier Cessenat
3dfb61116d
openblas: update Intel patch directive (#23786) 2021-05-21 09:32:40 +02:00
Olivier Cessenat
5e782f6a23
gsl: update external-cblas patch directive (#23787) 2021-05-21 09:31:31 +02:00
Adam J. Stewart
2d69f63a9c
ghostscript: add tesseract variant (#23794) 2021-05-21 09:22:03 +02:00
Cameron Rutherford
63ea0c8865
exago: enforcing PETSc version < 3.15 (#23774) 2021-05-21 09:20:58 +02:00
Adam J. Stewart
72b6014861
tk: add new version, add macOS patch (#23825) 2021-05-21 09:04:50 +02:00
arjun-raj-kuppala
b8fc1094ff
rdc: add v4.2.0 (#23829) 2021-05-21 08:57:40 +02:00
Dan Bonachea
1242f10d11
Update the GASNet package (#23796)
The previous `gasnet` spack package was not vetted/approved by the GASNet library maintainers. This one is.

Notably adds build-time testing and smoke-testing.

Convert network variants into a multi-valued `conduits` variant has the minor advantage of enabling a concise `conduits=none` spec, but the major drawback that it degrades the `spack info gasnet` output.
2021-05-20 23:19:21 -07:00
Glenn Johnson
6e378102fd
New package: py-reindent (#23828) 2021-05-20 21:27:59 -05:00
Seth R. Johnson
d2178fb47b
swig: add smoke tests (#23662) 2021-05-20 17:00:20 -07:00
Olivier Cessenat
3f184b5874
New Package: visit-silo (#22907)
* New Package: visit-silo
* New Package: visit-$n as an extension to VisIt
* New Package: visit-$n only as an extension to VisIt
2021-05-20 15:20:49 -07:00
Olivier Cessenat
12dbae3b45
New Package: visit-cgns (#22905)
* New Package: visit-cgns
* visit-cgns: extends visit and modifies VISIT_PLUGIN_DIR with a trick
2021-05-20 15:20:19 -07:00
Ben Darwin
fcb8942c88
minc-toolkit: new package (#23818) 2021-05-20 21:36:06 +00:00
Cyrus Harrison
30991cd9cd
add ascent 0.7.1 release (#23823) 2021-05-20 14:15:10 -07:00
Cyrus Harrison
1d10245fd4
dray package: add version 0.1.6 (#23792) 2021-05-20 12:04:05 -07:00
Adam J. Stewart
ea5b5a6d3f
py-torch: add patch to build on systems with glibc<2.12 (#23806) 2021-05-20 20:16:50 +02:00
Olivier Cessenat
f66f7faee1
opencascade: add v7.4.0p2 and v7.5.2 (#23807) 2021-05-20 20:16:29 +02:00
Ben Darwin
ef12b0cb8f
ants: add v2.3.5 (#23752) 2021-05-20 17:01:21 +00:00
Valentin Volkl
7c8b5a4e3a
py-awkward: add version 1.2.3 (#23808)
* dlpack: add tagged versions

* py-pybind11: add missing test dependency

* py-awkward: add version 1.2.3
2021-05-20 10:28:57 -06:00
Andreas Baumbach
2716791c7d
py-lazyarray: add new version 0.3.2 (#23700)
* py-lazyarray: add new version 0.3.2

Change-Id: Ie8a40f3ff1fe7477e27f6085b9ad6673395258b2

* fixup dependencies

Change-Id: I4b2fb7a0abb462f8df74c383c67517065cd95b67

* Update var/spack/repos/builtin/packages/py-lazyarray/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-05-20 11:28:23 -05:00
Harmen Stoppels
3368e06bc6
gnupg: create a gpg2 symlink on install (#23789) 2021-05-20 18:28:13 +02:00
Andreas Baumbach
ed4de5a688
py-py-cpuinfo: add v6.0.0 and v8.0.0 (#23721) 2021-05-20 17:59:33 +02:00
Chris White
7055846ca1
Axom: Small updates and a new version (#23803)
* Tweak SCR variant, Add 0.5.0, Move flag to flag handler, Add new conduit/axom conflict

* flake
2021-05-20 08:26:33 -07:00