Commit Graph

24881 Commits

Author SHA1 Message Date
Cory Bloor
4238318de2 rocsolver: Tighten rocsolver package dependencies (#25917)
- Specify CMake minimum version more precisely
- Ensure rocBLAS is available at build time
- Limit workaround for missing rocblas include path
  to the only affected version (4.1.0)
- Make hip a build and link dependency
- Remove hip's link dependencies

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-09-30 22:57:28 +02:00
Robert Underwood
7694c58736 sz: fix for external python sitelib (#26067)
fixes #25973
2021-09-30 11:52:20 -07:00
bernhardkaindl
af54f7b15b gromacs-chain-coordinate: Fix calling the test suite (#26367) 2021-09-30 18:18:03 +02:00
Harmen Stoppels
1aa7758dbb match .spack literal, not as a regex (#26374) 2021-09-30 14:54:57 +00:00
Harmen Stoppels
727dcef2f4 Disable __skip_rocmclang again (#26187)
CMake 3.21.3 disables the broken hipcc-as-rocmclang detection again.

From the release notes:

> The AMD ROCm Platform hipcc compiler was identifed by CMake 3.21.0
> through 3.21.2 as a distinct compiler with id ROCMClang. This has been
> removed because it caused regressions. Instead:
> * hipcc may no longer be used as a HIP compiler because it interferes
>   with flags CMake needs to pass to Clang. Use Clang directly.
> * hipcc may once again be used as a CXX compiler, and is treated as
>   whatever compiler it selects underneath, as CMake 3.20 and below
>   did.
2021-09-30 16:01:17 +02:00
Harmen Stoppels
4dee7d2b22 Add a conflict for patchelf to catch errors earlier in bootstrapping (#26373) 2021-09-30 15:18:56 +02:00
Harmen Stoppels
525aa11827 Bump version from v0.16.2 to v0.16.3 (#26372) 2021-09-30 11:54:48 +00:00
Olivier Cessenat
9e70fc630e dos2unix: new version 7.4.2 and enforce link with gettext (#26371) 2021-09-30 12:04:32 +02:00
Harmen Stoppels
b96d836a72 Move gnuconfig under the spack org (#26370) 2021-09-30 11:30:29 +02:00
Diego Alvarez
56eddf2e3c Added OpenJDK 17, 11 for Darwin, and set preferred to 11 (#26368) 2021-09-30 11:29:36 +02:00
Maciej Wójcik
7c3b2c1aa8 gromacs-chain-coordinate: new package (#25426) 2021-09-30 04:12:37 +02:00
Shahzeb Siddiqui
ef9967c7f4 Add e4s tags (#23382)
Add 'e4s' tags for all packages according to https://github.com/E4S-Project/e4s/blob/master/E4S_Products.md
2021-09-29 17:57:52 -07:00
acastanedam
02f356159b linux-pam: include more official (recent) releases (#26065) 2021-09-29 20:51:39 -04:00
David Beckingsale
d31830eaf5 Move new CUDA conflicts inside when('~allow-unsupported-compilers') block (#26132)
* Move new CUDA conflicts inside when('~allow-unsupported-compilers') block

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-09-30 00:22:26 +00:00
Valentin Volkl
2ea1bf84ec py-snappy: add patch to fix dependencies (#26352)
* py-snappy: add patch to fix dependencies

* Update var/spack/repos/builtin/packages/py-snappy/req.patch

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29 15:50:42 -05:00
Manuela Kuhn
0a7804f52e py-jupyterlab: add 3.0.14, 3.0.18 and 3.1.14 (#26339) 2021-09-29 14:34:18 -05:00
Valentin Volkl
805d59d47f geos: fix patch versions (#26351) 2021-09-29 18:32:37 +00:00
Manuela Kuhn
10638ea449 py-jupyter-packaging: add 0.7.12 and 0.10.6 (#26338)
* py-jupyter-packaging: add 0.7.12 and 0.10.6

* Update var/spack/repos/builtin/packages/py-jupyter-packaging/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-jupyter-packaging/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29 18:31:32 +00:00
Howard Pritchard
6d613bded0 cray-mvapich2: add a package to support (#26273)
The format of the HPE/Cray supplied module for cray-mvapich2 on HPE apollo systems is
very different from the cray-mpich module supplied on Cray EX and XE
systems.

Recent changes to the cray-mpich package -

https://github.com/spack/spack/pull/23470

broke support for cray-mvapich2 and relies now on the structure of the
cray-mpich module to work properly.

Rather than try to support two very different vendor mpich modules
using the same spack package, just add another one specialized for
the cray-mvapich2 module.

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-09-29 20:12:13 +02:00
Martin Diehl
f32feeee45 new package(s): DAMASK (damask, damask-grid, damask-mesh) (#25692) 2021-09-29 19:57:01 +02:00
Manuela Kuhn
c75e84e9f3 py-qtpy: add 1.11.2 (#26343) 2021-09-29 11:19:23 -05:00
Harmen Stoppels
7fdb879308 ca-certificates-mozilla for openssl & curl (#26263)
1. Changes the variant of openssl to `certs=mozilla/system/none` so that
   users can pick whether they want Spack or system certs, or if they
   don't want certs at all.
2. Keeps the default behavior of openssl to use certs=systems.
3. Changes the curl configuration to not guess the ca path during
   config, but rather fall back to whatever the tls provider is
   configured with. If we don't do this, curl will still pick up system
   certs if it finds them.

As a minor fix, it also adds the build dep `pkgconfig` to curl, since
that's being used during the configure phase to get openssl compilation
flags.
2021-09-29 09:05:58 -07:00
iarspider
24263c9e92 New package: py-async-lru (#26328) 2021-09-29 18:05:36 +02:00
Manuela Kuhn
7cd3af5d52 py-mffpy: add new package (#26345) 2021-09-29 17:59:50 +02:00
bernhardkaindl
4a31f0fb0f py-mock: fix depends of @:2.0.0 and bump version (#26336)
* py-mock: fix depends of `@:2.0.0` and bump version

fixes the build of `py-gsutil`, it depends on `'py-mock@:2.0.0'`.

* Update var/spack/repos/builtin/packages/py-mock/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-mock/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Apply the other requested changes

* Add requested change: Add the python@3.6 for newer versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29 15:39:57 +00:00
Greg Sjaardema
5132cfcc63 seacas: new release and fixes for metis/parmetis (#26310)
* seacas: new release and fixes for metis/parmetis

* Update to add sha256 checksum for latest seacas release

* Updated the documentation strings with new applications

* Fixed the metis/parmetis variants and logic depending on whether mpi
  is enabled/disabled. (There is still a zoltan issue I need to fix,
  but this will at least allow seacas to be built without
  metis/parmetis or with +mpi+parmetis.  The ~mpi+metis still needs
  work elsewhere.)

* Enable cpup, slice, zellij in +applications
2021-09-29 16:53:49 +02:00
Harmen Stoppels
9d39a1bf42 Un-unset TERM and DISPLAY (#26326)
For interactive `spack build-env`'s this is undesired behavior
2021-09-29 16:28:32 +02:00
bernhardkaindl
11278dd55a py-monotonic: bump version to 1.6 (#26335)
Fixes `spack solve py-gsutil`: It depends on 'py-monotonic@1.4:'
2021-09-29 09:19:47 -05:00
Pat Riehecky
e45979d39a Added OpenJDK 16.0.2 (#26322) 2021-09-29 14:19:38 +00:00
MichaelLaufer
ed54d6c926 py-netcdf4: adds parallel IO support (#26178) 2021-09-29 08:21:16 -05:00
iarspider
634b0b25c4 Add new package: py-backports-entry-points-selectable (#26329) 2021-09-29 15:09:27 +02:00
Manuela Kuhn
ac29b70d18 py-dipy: add new package (#26331) 2021-09-29 15:05:34 +02:00
Manuela Kuhn
e01947effc py-imageio-ffmpeg: add 0.4.5, fix installation and import (#26330) 2021-09-29 14:56:16 +02:00
Manuela Kuhn
78dbac69e9 py-pyqt5-sip: add new package (#26325) 2021-09-29 14:52:29 +02:00
bernhardkaindl
80c8978691 krb5: bump version and limit depends_on('openssl') to @1 (#26332)
krb5 uses an openssl RSA API which is deprecated in OpenSSL@3.0.0
with an const/non-const mismatch.
2021-09-29 11:24:08 +00:00
Manuela Kuhn
ab6b531e10 py-argcomplete: add 1.12.3 (#26228) 2021-09-29 13:10:03 +02:00
Olli Lupton
cffa1e7f6c Add ccache 4.4.2. (#26327) 2021-09-29 09:41:28 +00:00
Axel Huebl
c5410bd333 FFTW: NEON SIMD is float-only (#26321)
Fix on Apple Mac M1 (aarch64):
```
configure: error: NEON requires single precision
```
2021-09-29 02:40:45 +00:00
Ben Darwin
c578882bb2 itk: add version 5.2.1 (#26307) 2021-09-28 18:15:42 -07:00
Greg Sjaardema
a550416a1f netcdf-c: Update for 4.8.1 and new download site (#26309)
NetCDF-4.8.1 has been released.

    As discussed in https://github.com/Unidata/netcdf-c/issues/2110
    (netcdf-c-4.8.1.tar.gz not on ftp site... #2110), the canonical
    download site for netCDF releases has been changed and the previous
    ftp site is no longer available.

    This PR updates the `url` to point to the new recommended download
    site and updates the sha256 checksums for the new tar files.
2021-09-28 17:21:28 -07:00
Gregory Lee
82d857dced qhull deprecated libqhull.so in 2020.2 (#26304) 2021-09-28 16:54:30 -07:00
Manuela Kuhn
32b5669e8d py-pytz: add 2021.1 (#26289) 2021-09-28 18:07:28 +00:00
iarspider
a2c16356a1 dire: Fix depends for new pythia version scheme (#26294)
Pythia version numbering was changed in #26255 from xyyy to x.yyy
2021-09-28 18:05:52 +02:00
Edward Hartnett
4f4984e313 wrf-io: added NOAA software maintainers, added openmp variant (#26113) 2021-09-28 08:55:09 -07:00
Tamara Dahlgren
5ace5ca7a4 Post 26211 rebase updates (#26246) 2021-09-28 08:53:59 -07:00
Manuela Kuhn
519f75b865 py-scooby: add new package (#26284) 2021-09-28 17:51:37 +02:00
Diego Alvarez
023d9e3b4c Added OpenJDK 11.0.12_7 (#26299) 2021-09-28 17:47:45 +02:00
iarspider
9810a80c6d Update nlohmann-json to 3.10.2 (#26260)
* Update nlohmann-json

* fix testsuite

Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-28 08:45:34 -07:00
Harmen Stoppels
6c33047514 Squashfs is a makefilepackage (#26300) 2021-09-28 17:45:16 +02:00
bernhardkaindl
3c5a4157b0 py-anuga: add git main version to support build with python@3.5: (#26248)
* py-anuga: add git main version to support build with python@3.5:

py-anuga's main branch has been converted to Python-3 recently.

* py-triangle: use pypi, py-anuga: Fixed depends and test suite works now
2021-09-28 10:37:09 -05:00