This PR updates the vtk package to use new variable names and adds some
dependencies.
- add version 9.1.0
- add version 1.4.2 to gl2ps package. This is needed to use gl2ps as a
dependency.
- new package: utf8cpp, used as a dependency for version 9.
- add dependencies when possible
- pugixml
- libogg
- libtheora
- utf8cpp
- gl2ps
- proj
- turn off configuring MPI if ~mpi
- always use the package-provided FindHDF5.cmake for versions up to 8.
Version @9: already does this so does not need a patch.
- use new CMake variables for version 9
- remove unused CMake variables depending on version
and replace patch download with simple filter_file() to fix the duplicate definition.
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
* py-packaging: add 21.3
* Update var/spack/repos/builtin/packages/py-packaging/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
A part of the gpgme testsuite by default even runs during normal
make and make install phases, creating a public keyring in ~/.gnupg.
Prevent this and avoid build failures in containers due to another
problem of the test suite and fix a test case of the new 0.16.0 release.
When the uidmap tools are installed on a system, this allows to run
containers as unprivileged user (rootless and daemonless) slimilar
to singularity, but using a familiar CLI: "alias docker=podman"
This is helpful to run e.g. spack builds in containers to reproduce
build failures from CI without requiring a installation of docker.
The required dependencies of podman are added as well.
Fix to not attempt to patch a nonexisting file for old versions
when building with gcc-11. Skip the build-time tests as all access
the X DISPLAY and open many windows on the screen.
I was browsing package metadata, as one does on a Sunday, and stumbled across a new kind of version attribute - brancch! I suspect this is supposed to be "branch."
Update flux-core and flux-sched package.py to include latest releases.
For flux-sched:
- Add patch to disable false-positive-happy valgrind test
- pin yaml-cpp to 0.6.3 due to issue described at:
https://github.com/flux-framework/flux-sched/issues/886
Starting with meson 0.60, unknown args produce errors and
the -Dx11 arg is only present in @:2.40
https://gitlab.gnome.org/GNOME/gtk-osx/-/issues/44
Add tiff variant: Default disabled since fails the tests in part.
Only libtiff@:3.9 pass, but these old versions have severe security issues.
Deprecate @:2.41 as they are affected by the high-severity CVE-2021-20240:
https://nvd.nist.gov/vuln/detail/CVE-2021-20240
* Fix version constrains in py-ipykernel and py-ipython
Before the fix:
```
$ spack spec py-ipykernel@6.4.1 ^py-jupyter-client@7.0.6
==> Error: py-ipykernel@6.4.1 ^py-jupyter-client@7.0.6 is unsatisfiable, conflicts are:
no version satisfies the given constraints
```
After the fix:
```
```
(thanks god the old concretizer is still there - it provides sane error messages!)
* Fix py-ipython recipe
* Revert "Fix py-ipython recipe"
This reverts commit d65071665f.
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize
* adding gptune package
* minor fix for macos spack test
* update patch for py-scikit-optimize; update test files for gptune
* fixing gptune package style error
* fixing unit tests
* a few changes reviewed in the PR
* improved gptune package.py with a few newly added/improved dependencies
* fixed a few style errors
* minor fix on package name py-pyro4
* fixing more style errors
* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* resolved a few issues in the PR
* fixing file permissions
* a few minor changes
* style correction
* minor correction to jq package file
* Update var/spack/repos/builtin/packages/py-pyro4/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fixing a few issues in the PR
* adding py-selectors34 required by py-pyro4
* improved the superlu-dist package
* improved the superlu-dist package
* moree changes to gptune and py-selectors34 based on the PR
* Update var/spack/repos/builtin/packages/py-selectors34/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
- Prevent `-j` flags to `make`, which has been known to cause problems
with Racket builds.
- Add variants for various common build flags, including support
for both versions of the Racket VM environment.
In addition:
- Prefer the minimal release to improve install times. Bells and
whistles carry their own runtime dependencies and should be
installed via `raco`. An enterprising user may even create a
`RacoPackage` class to make spack aware of `raco` installed packages.
- Match the official version numbering scheme.
* py-cython: add 3.0.0a9
* Update var/spack/repos/builtin/packages/py-cython/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* New version: py-singledispatch 3.7.0
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Make CUDA and ROCm architecture conditional
fixes#14337
The variant to specify which architecture to use
for CUDA and ROCm are now conditional on +cuda and
+rocm respectively.
* cp2k: make all CUDA related variants conditional on +cuda
* New version: py-pyzmq 22.3.0
* Update var/spack/repos/builtin/packages/py-pyzmq/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-cycler: add 0.11.0
* Update var/spack/repos/builtin/packages/py-cycler/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* New version: py-qtconsole 5.2.0
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* New version: openldap 2.6.0;
fix recipe for groff (requires pkg-config to find uchardet);
fix recipe for openldap (requires groff to build documentation)
* Restrict openldap versions of py-python-ldap and percona-server
* Update var/spack/repos/builtin/packages/groff/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
This causes `otfconfig` to also list zlib's library directory.
Otherwise, `-lz` cannot be found. Also remove `--with-zlibsymbols`,
which doesn't seem to be supported anymore.
Include several several patches to vtk 8.1 for building on a
system with no system install X11 libraries or include files.
Specify specific versions of dependent packages that are known to work with 3.2.1.
Tested on spock.olcf.ornl.gov. The GUI came up and rendered images
and an image was successfully saved using off screen rendering from
data from curv2d.silo.
The previous workaround of using CMAKE_INSTALL_RPATH=ON was used to
avoid CMake trying to write an RPATH into the linker script libcxx.so,
which is nonsensical. See commit f86ed1e.
However, CMAKE_INSTALL_RPATH=ON seems to disable the build RPATH, which
breaks LLVM during the build when it has to locate its build-time shared
libraries (e.g. libLLVM.so). That required yet another workaround, where
some shared libraries were installed "by hand", so that they were picked
up from the install libdir. See commit 8a81229.
This was a dirty workaround, and also makes it impossible to use ninja,
since we explicitly invoked make.
This commit removes the two old workaround, and sets
LIBCXX_ENABLE_STATIC_ABI_LIBRARY=ON, so that libc++abi.a is linked into
libc++.so, which makes it enough to link with -lc++ or invoke clang++
with -stdlib=libc++, so that our install succeeds and linking LLVM's c++
standard lib is still easy.
Some packages use a 64_ or _64 symbol suffix for the ilp64 (= 64-bit
integers) intefrace for BLAS. In particular if we want to support shim
libraries like libopenblastrampoline supporting both the 32 and 64 bit
integer version of blas, it must be possible to distinguish between the
two.
mesa inherits MesonPackage (since October 2020) which depends on Py@3.
The conflicts('mesa') enables a regular build of `qt@5.7:5.15+webkit`
without having to specify the exact version by causing the concretizer
to select mesa18 which does not depend on python@3.
Co-authored-by: Bernhard Kaindl <bernhard.kaindl@ait.ac.at>
* New version: py-pylint 2.8.2; new package py-platformdirs
* Update var/spack/repos/builtin/packages/py-platformdirs/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-pylint/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Intel mpi comes with an installation of libfabric (which it needs as a
dependency). It can use other implementations of libfabric at runtime
though, so if you install a package that depends on `mpi` and
`libfabric`, you can specify `intel-mpi+external-libfabric` and ensure
that the Spack-built instance is used (both by `intel-mpi` and the
root).
Apply analogous change to intel-oneapi-mpi.
* New version: py-pyrsistent 0.18.0
* Update package.py
* Update var/spack/repos/builtin/packages/py-pyrsistent/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* New version: py-pytest 6.2.5
* Update var/spack/repos/builtin/packages/py-pytest/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Use setup_run_environment to search for libraries and set env variables for module generation.
Libraries are installed with CMAKE_INSTALL_LIBDIR, which can be lib or lib64 depending on the machine, which makes it impossible to hardcode through modules.yaml.
If the perl that perl-forks is built against is non-threaded the build
system will drop into interactive mode to ask about simulating ithreads.
This causes the build to hang. Set FORKS_SIMULATE_USEITHREADS to avoid
going into interactive mode.
If building Qt on a system with a recent glibc but an older kernel, it
is possible that Qt configures features based on glibc that are not
supported in the kernel. This PR tests the kernel version and ensures
certain features are disabled if the kernel does not support them.
* New version: py-prettytable 2.4.0; update homepage
* Update var/spack/repos/builtin/packages/py-prettytable/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* New version: py-prometheus-client 0.12.0; new dependency (py-twisted) version 21.7.0 + it's dependencies
* Apply suggestions from code review (1/?)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Changes from review (2/?)
* Changes from review (3/?)
* Changes from review (4/?)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
- disable graphblas by default (very slow to compile)
- fix patch upperbound for cuda 11
- remove find_system_libs; not sure why it was added in the first place,
but it makes spack rather unusable as it introduces an rpath to /lib/...
